Rh4AG142600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017148
Physical Location & Seq
Forward (+)
36146176 .. 36148589
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG142600.1

Sequence Viewer

Length: 1272 bp
ATGAAATTCAATGGAAGTGATATTATGAAGACAAGTAATATTGATCAGAGAGAAGATGAGTATTGTGTCAGACTAAGATCAATTGGTGCTTATCAAAATGAACCTAGTACCAAAAAACATGATCCTATGTGCAAAAGCAGCAACAAGGAAAAGTCTGTTGCTGCCGTACTTTCCCATTCATCGGAGAAGGAACACCATATTGATAATCAGTTGGGTAAAGAGAGAAGTTTTAGTGATAAAGAGTCGATGTGGTTGTCTTCAGATTGTTCATCACCTTCTGCATTTTTCAGGGAGTATAGATGGTCTGGTTCCTTTCATCTCTCACTTGATGAACACAAGAATGTACACACAGATTTGATGGATGAAAAAGTAGCGAGTCGACTACTTAGTTCAGCTATGAATGATGCAAAACCAAGAGAGTCGTTGTGTGATGACTCAACAAGTTGTGGAAACTCTTCAGCTCCTCTTAGCAGCACACCTAGTTCCTCTCAGATTTTAGATTTGGAGAGAATAGGTTATCAAGTATCTTTGTTGAATCTTGATGGGGATGATTACAAATGGATTCCAGATACAGAAGTTGAGTCATATTGTCTTCAATATGCTTTTCACTCTCCATCATACAAGACTAGGTCGGATCACGAAGCTGAGTTCACTAATTCTTGTATTTCTACAGCGACTGAAGCACAAAATGAAAAACCAGGATATTGTTTTCCATCAGATCAAGCTTCAAAAGCTGTAGAGGTTGAAGAGTTGAACACAAATGAACCTCTTTTTTGGCCATTTGCTCAAAAAATTGATTGGAGTGCCGAAGCAACTTGGAACTGTTTTTCCATGTCACCGCGGAAGAGCATAGCAACTATTGGAACTCCACTTGATTCAATTATATTAAGGCGTTATAGGGGCAGCATGGATCTCAAACAAGAGCGTAAGAGAAAACTAGTGTTTAGCTTAGGATCAACAACATCAAAGATACCAGATATGAAGCAAAGCTACACCAAGGGTATCAAGGATATCCGAGAGATCTGTAATGCCCCTTCGAGGTTGAGCAGGGTAACCAAAAGGACTGAAAAAGACAATATTTTAGAACATCAAAATAAAGAAGTAACTATAAAAAAACCAGTTGTTATGGCTGAAGATATCATGGAAGAAGATTTTGAATCAAAACAACATGGGATTGAGATGTTCTTGGGCCTTGATGAGTTTGATGGTCACGAGGGAATTGATTTAACATTTAACAAAGATGATTTCTCACTGAACATATCTTTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

423

Amino Acids

48.11

Weight (kDa)

5.31

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05894 AT2G31480
prunus_persica Prupe.1G190600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407081
rosa_laevigata RLG00000008738
rosa_multiflora Rmu_sc0000600.1_g000001
rosa_roxburghii Rroxscaffold_5G00351810
rosa_rugosa Rorug04G0077900
rosa_samantha Rh4AG142600 Rh4BG140500 Rh4CG149100 Rh4DG136700
rosa_wichuraiana Rw4G011620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 379
AccII CGCG 1 cut(s) 841
AciI CCGC 2 cut(s) 839, 841
AclWI GGATC 4 cut(s) 116, 642, 918, 961
AcoI YGGCCR 1 cut(s) 776
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 4 cut(s) 243, 441, 699, 1152
AfaI GTAC 3 cut(s) 109, 168, 345
AfiI CCNNNNNNNGG 2 cut(s) 181, 1038
AgsI TTSAA 8 cut(s) 10, 535, 596, 729, 746, 754, 879, 1157
AhlI ACTAGT 1 cut(s) 937
AjnI CCWGG 1 cut(s) 697
AloI GAACNNNNNNTCC 2 cut(s) 812, 844
AluBI AGCT 7 cut(s) 395, 461, 644, 725, 734, 948, 990
AluI AGCT 7 cut(s) 395, 461, 644, 725, 734, 948, 990
AlwI GGATC 4 cut(s) 116, 642, 918, 961
AlwNI CAGNNNCTG 1 cut(s) 677
AoxI GGCC 2 cut(s) 776, 1189
ApeKI GCWGC 4 cut(s) 138, 161, 471, 903
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 1189
AsuHPI GGTGA 2 cut(s) 264, 828
BaeI ACNNNNGTAYC 2 cut(s) 561, 594
BalI TGGCCA 1 cut(s) 778
BarI GAAGNNNNNNTAC 4 cut(s) 974, 1006, 1018, 1050
BauI CACGAG 1 cut(s) 1211
BbsI GAAGAC 3 cut(s) 35, 249, 584
BbvI GCAGC 4 cut(s) 148, 150, 483, 915
BccI CCATC 6 cut(s) 294, 352, 536, 622, 721, 1199
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 699
BclI TGATCA 1 cut(s) 43
BcuI ACTAGT 1 cut(s) 937
BfaI CTAG 4 cut(s) 105, 480, 627, 938
BfmI CTRYAG 2 cut(s) 669, 735
BglII AGATCT 1 cut(s) 1020
BisI GCNGC 4 cut(s) 139, 162, 472, 904
BlsI GCNGC 4 cut(s) 140, 163, 473, 905
Bme1390I CCNGG 1 cut(s) 699
BmgT120I GGNCC 1 cut(s) 1189
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 699
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 3 cut(s) 35, 249, 584
Bpu10I CCTNAGC 1 cut(s) 949
BsaJI CCNNGG 2 cut(s) 839, 996
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 1038
Bse1I ACTGG 1 cut(s) 1118
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 2 cut(s) 839, 996
BseGI GGATG 2 cut(s) 367, 553
BseLI CCNNNNNNNGG 2 cut(s) 181, 1038
BseMII CTCAG 2 cut(s) 503, 636
BseNI ACTGG 1 cut(s) 1118
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 4 cut(s) 148, 150, 483, 915
Bsh1236I CGCG 1 cut(s) 841
BshFI GGCC 2 cut(s) 778, 1191
BslI CCNNNNNNNGG 2 cut(s) 181, 1038
BsnI GGCC 2 cut(s) 778, 1191
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 8 cut(s) 43, 77, 121, 634, 718, 910, 953, 1020
BspACI CCGC 2 cut(s) 839, 841
BspANI GGCC 2 cut(s) 778, 1191
BspCNI CTCAG 2 cut(s) 502, 637
BspFNI CGCG 1 cut(s) 841
BspLI GGNNCC 1 cut(s) 310
BspPI GGATC 4 cut(s) 116, 642, 918, 961
BspQI GCTCTTC 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 343
BsrI ACTGG 1 cut(s) 1118
BssECI CCNNGG 2 cut(s) 839, 996
BssMI GATC 8 cut(s) 43, 77, 121, 634, 718, 910, 953, 1020
BssSI CACGAG 1 cut(s) 1211
BssT1I CCWWGG 1 cut(s) 996
Bst2BI CACGAG 1 cut(s) 1211
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 1 cut(s) 824
Bst6I CTCTTC 3 cut(s) 460, 741, 839
BstAUI TGTACA 1 cut(s) 343
BstDEI CTNAG 6 cut(s) 74, 386, 467, 489, 645, 949
BstDSI CCRYGG 1 cut(s) 839
BstEII GGTNACC 1 cut(s) 1051
BstF5I GGATG 2 cut(s) 367, 553
BstFNI CGCG 1 cut(s) 841
BstKTI GATC 8 cut(s) 46, 80, 124, 637, 721, 913, 956, 1023
BstMBI GATC 8 cut(s) 43, 77, 121, 634, 718, 910, 953, 1020
BstMWI GCNNNNNNNGC 3 cut(s) 138, 680, 731
BstNI CCWGG 1 cut(s) 699
BstPI GGTNACC 1 cut(s) 1051
BstSCI CCNGG 1 cut(s) 697
BstSFI CTRYAG 2 cut(s) 669, 735
BstUI CGCG 1 cut(s) 841
BstV1I GCAGC 4 cut(s) 148, 150, 483, 915
BstV2I GAAGAC 3 cut(s) 35, 249, 584
BstX2I RGATCY 2 cut(s) 910, 1020
BstYI RGATCY 2 cut(s) 910, 1020
BsuRI GGCC 2 cut(s) 778, 1191
BtgI CCRYGG 1 cut(s) 839
BtsCI GGATG 2 cut(s) 367, 553
BtsIMutI CAGTG 1 cut(s) 1250
CaiI CAGNNNCTG 1 cut(s) 677
Cfr13I GGNCC 1 cut(s) 1189
Cfr42I CCGCGG 1 cut(s) 842
Csp6I GTAC 3 cut(s) 108, 167, 344
CviAII CATG 5 cut(s) 119, 832, 907, 1141, 1169
CviQI GTAC 3 cut(s) 108, 167, 344
DdeI CTNAG 6 cut(s) 74, 386, 467, 489, 645, 949
DpnI GATC 8 cut(s) 45, 79, 123, 636, 720, 912, 955, 1022
DpnII GATC 8 cut(s) 43, 77, 121, 634, 718, 910, 953, 1020
EaeI YGGCCR 1 cut(s) 776
Eam1104I CTCTTC 3 cut(s) 460, 741, 839
EarI CTCTTC 3 cut(s) 460, 741, 839
Eco130I CCWWGG 1 cut(s) 996
Eco32I GATATC 2 cut(s) 1012, 1138
Eco57I CTGAAG 4 cut(s) 243, 441, 699, 1152
Eco91I GGTNACC 1 cut(s) 1051
EcoO65I GGTNACC 1 cut(s) 1051
EcoRII CCWGG 1 cut(s) 697
EcoRV GATATC 2 cut(s) 1012, 1138
EcoT14I CCWWGG 1 cut(s) 996
ErhI CCWWGG 1 cut(s) 996
FaeI CATG 5 cut(s) 122, 835, 910, 1144, 1172
FatI CATG 5 cut(s) 118, 831, 906, 1140, 1168
FbaI TGATCA 1 cut(s) 43
FblI GTMKAC 1 cut(s) 379
Fnu4HI GCNGC 4 cut(s) 139, 162, 472, 904
FokI GGATG 2 cut(s) 374, 560
Fsp4HI GCNGC 4 cut(s) 139, 162, 472, 904
FspBI CTAG 4 cut(s) 105, 480, 627, 938
GluI GCNGC 4 cut(s) 139, 162, 472, 904
HaeIII GGCC 2 cut(s) 778, 1191
Hin1II CATG 5 cut(s) 122, 835, 910, 1144, 1172
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 9 cut(s) 242, 376, 419, 434, 535, 562, 581, 875, 1157
HphI GGTGA 2 cut(s) 264, 828
Hpy166II GTNNAC 3 cut(s) 346, 380, 651
Hpy188I TCNGA 8 cut(s) 48, 71, 184, 262, 492, 634, 718, 1016
Hpy188III TCNNGA 4 cut(s) 539, 566, 638, 1211
Hpy8I GTNNAC 3 cut(s) 346, 380, 651
HpyAV CCTTC 3 cut(s) 181, 285, 1044
HpyCH4III ACNGT 1 cut(s) 824
HpyCH4V TGCA 3 cut(s) 132, 281, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 680, 731
HpyF3I CTNAG 6 cut(s) 74, 386, 467, 489, 645, 949
Hsp92II CATG 5 cut(s) 122, 835, 910, 1144, 1172
Ksp22I TGATCA 1 cut(s) 43
KspI CCGCGG 1 cut(s) 842
Kzo9I GATC 8 cut(s) 43, 77, 121, 634, 718, 910, 953, 1020
LguI GCTCTTC 1 cut(s) 839
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 8 cut(s) 274, 291, 579, 684, 711, 987, 1033, 1131
Lsp1109I GCAGC 4 cut(s) 148, 150, 483, 915
LweI GCATC 1 cut(s) 394
MaeI CTAG 4 cut(s) 105, 480, 627, 938
MaeIII GTNAC 4 cut(s) 834, 1051, 1102, 1208
MalI GATC 8 cut(s) 45, 79, 123, 636, 720, 912, 955, 1022
MboI GATC 8 cut(s) 43, 77, 121, 634, 718, 910, 953, 1020
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 2 cut(s) 910, 1020
MlsI TGGCCA 1 cut(s) 778
MluCI AATT 6 cut(s) 5, 81, 655, 792, 879, 1218
MluNI TGGCCA 1 cut(s) 778
MlyI GAGTC 5 cut(s) 251, 385, 428, 428, 590
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 6 cut(s) 474, 496, 733, 777, 1032, 1207
Mox20I TGGCCA 1 cut(s) 778
MroXI GAANNNNTTC 1 cut(s) 454
MscI TGGCCA 1 cut(s) 778
MseI TTAA 3 cut(s) 887, 1226, 1233
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 778
MspA1I CMGCKG 1 cut(s) 841
MspR9I CCNGG 1 cut(s) 699
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 1 cut(s) 841
MwoI GCNNNNNNNGC 3 cut(s) 138, 680, 731
NdeII GATC 8 cut(s) 43, 77, 121, 634, 718, 910, 953, 1020
NlaIII CATG 5 cut(s) 122, 835, 910, 1144, 1172
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 834, 1208
PciSI GCTCTTC 1 cut(s) 839
PdmI GAANNNNTTC 1 cut(s) 454
PfeI GAWTC 4 cut(s) 535, 562, 875, 1157
PflFI GACNNNGTC 1 cut(s) 628
PkrI GCNGC 4 cut(s) 140, 163, 473, 905
PleI GAGTC 5 cut(s) 250, 384, 427, 428, 589
PpsI GAGTC 5 cut(s) 250, 384, 427, 428, 589
Psp6I CCWGG 1 cut(s) 697
PspEI GGTNACC 1 cut(s) 1051
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 1 cut(s) 1189
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 2 cut(s) 910, 1020
PsyI GACNNNGTC 1 cut(s) 628
RsaI GTAC 3 cut(s) 109, 168, 345
RsaNI GTAC 3 cut(s) 108, 167, 344
RseI CAYNNNNRTG 1 cut(s) 339
SacII CCGCGG 1 cut(s) 842
SalI GTCGAC 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 839
SaqAI TTAA 3 cut(s) 887, 1226, 1233
SatI GCNGC 4 cut(s) 139, 162, 472, 904
Sau3AI GATC 8 cut(s) 43, 77, 121, 634, 718, 910, 953, 1020
Sau96I GGNCC 1 cut(s) 1189
SchI GAGTC 5 cut(s) 251, 385, 428, 428, 590
ScrFI CCNGG 1 cut(s) 699
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 2 cut(s) 669, 735
Sfr303I CCGCGG 1 cut(s) 842
SgrBI CCGCGG 1 cut(s) 842
SmiMI CAYNNNNRTG 1 cut(s) 339
SpeI ACTAGT 1 cut(s) 937
Sse9I AATT 6 cut(s) 5, 81, 655, 792, 879, 1218
SsiI CCGC 2 cut(s) 839, 841
SspI AATATT 2 cut(s) 40, 1078
SspMI CTAG 4 cut(s) 105, 480, 627, 938
StyD4I CCNGG 1 cut(s) 697
StyI CCWWGG 1 cut(s) 996
TaaI ACNGT 1 cut(s) 824
TaqI TCGA 3 cut(s) 245, 379, 1037
TasI AATT 6 cut(s) 5, 81, 655, 792, 879, 1218
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 4 cut(s) 535, 562, 875, 1157
Tru1I TTAA 3 cut(s) 887, 1226, 1233
Tru9I TTAA 3 cut(s) 887, 1226, 1233
TscAI CASTG 1 cut(s) 1257
TseFI GTSAC 2 cut(s) 834, 1208
TseI GCWGC 4 cut(s) 138, 161, 471, 903
Tsp45I GTSAC 2 cut(s) 834, 1208
TspRI CASTG 1 cut(s) 1257
Tth111I GACNNNGTC 1 cut(s) 628
XapI RAATTY 1 cut(s) 5
XmiI GTMKAC 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 454
XspI CTAG 4 cut(s) 105, 480, 627, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.