Rroxscaffold_5G00351810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017148
Physical Location & Seq
Forward (+)
28453225 .. 28454250
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351810.1

Sequence Viewer

Length: 1026 bp
ATGTGGTTGTGTTCAGATTGTTCATCACCTTCTGCATTTTTCAGGGAGTATAGTTGGTCTGGTTCCTTCCATCTCTCACTTGATGAACACAAGAATGTACACACAGATTTGATGGATGAAAAAGTAGTGACTCGACTACTCAGTTCAGCTACGAATGATGCAAAACCAAGAGAGTCGTTGTGTGATGACTCAACAAGTTGCGGAAACTCTTCAGCTCCTCTTAGCAGCACACCTAGTTCCTCTCAGATTTTAGATTTGGAGAGAATAGGTTACCAAGTATCTTTGTTGAATCTTGATGGGGATGATTACAAATGGATTCCAGATACAGAAGTTGAGTCATATTGTCTTCAATATGCTTTTCACTCTCCATCATACAAGATTAGGTCGGATCACGAAGCTGAGTTCTCTAATTCTTGTATTTCTACAGCCACTGAAGCACAAAATGAAAAACCAGGATATTGTTTTCCATCAGAACAAGCTTCAAAAGCTGTAGAGGTTGAAGAGTTGAATACAAATGAACCTCTTTTTTGGCCATTTGCTCAAAAAATTGATTGGAGTGCCGAAGCAACTTGGAACTGTTTTTCCATGACACCGCGGAAGAGCATAGCAACTATTGGAACTCCACTAGATTCAATTATATTAAGGCGTTATAGGGGCAGCATGGATCTCAAACAAGAGCGTAGGAGAAAACTAGTGTTTAGCTTAGGATCAACAACATCAAAGTTACCAGATATGAAGCAAAGCTACACCAAGGGTATCAAGGATATCCGAGAGATCTGTAATGCCCCTTCGAGGTTTAGCAGGGTAACCAAAAGGACTGAAAAAGACAATATTTTAGAACACAAAAATAAAAAAGTAACTATAAAAAAACCAGTTGTTATGGCTGAAGATATCGTGGAAGAAGATTTTGAATCAAAACAACTTGGGATTGAGATGTTCTTGGGCCTTGATGAGTTTGACGGTCACGAGGGAATTGATTCAACATTTAACAAAGATGATTTCTCACTGAACATATCTTTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

38.78

Weight (kDa)

5.07

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05894 AT2G31480
prunus_persica Prupe.1G190600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407081
rosa_laevigata RLG00000008738
rosa_multiflora Rmu_sc0000600.1_g000001
rosa_roxburghii Rroxscaffold_5G00351810
rosa_rugosa Rorug04G0077900
rosa_samantha Rh4AG142600 Rh4BG140500 Rh4CG149100 Rh4DG136700
rosa_wichuraiana Rw4G011620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 595
AciI CCGC 3 cut(s) 201, 593, 595
AclWI GGATC 3 cut(s) 396, 672, 715
AcoI YGGCCR 1 cut(s) 530
AcuI CTGAAG 3 cut(s) 195, 453, 906
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 792
AgsI TTSAA 8 cut(s) 289, 350, 483, 500, 508, 633, 911, 981
AhlI ACTAGT 1 cut(s) 691
AjnI CCWGG 1 cut(s) 451
AloI GAACNNNNNNTCC 2 cut(s) 566, 598
AluBI AGCT 7 cut(s) 149, 215, 398, 479, 488, 702, 744
AluI AGCT 7 cut(s) 149, 215, 398, 479, 488, 702, 744
AlwI GGATC 3 cut(s) 396, 672, 715
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 2 cut(s) 530, 943
ApeKI GCWGC 2 cut(s) 225, 657
Asp700I GAANNNNTTC 2 cut(s) 208, 976
AspS9I GGNCC 1 cut(s) 943
AsuHPI GGTGA 1 cut(s) 18
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BalI TGGCCA 1 cut(s) 532
BarI GAAGNNNNNNTAC 4 cut(s) 728, 760, 772, 804
BauI CACGAG 1 cut(s) 965
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 237, 669
BccI CCATC 5 cut(s) 78, 106, 290, 376, 475
BciT130I CCWGG 1 cut(s) 453
BcuI ACTAGT 1 cut(s) 691
BfaI CTAG 3 cut(s) 234, 626, 692
BfmI CTRYAG 2 cut(s) 423, 489
BglII AGATCT 1 cut(s) 774
BisI GCNGC 2 cut(s) 226, 658
BlsI GCNGC 2 cut(s) 227, 659
Bme1390I CCNGG 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 943
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 703
BsaJI CCNNGG 2 cut(s) 593, 750
Bsc4I CCNNNNNNNGG 1 cut(s) 792
Bse1I ACTGG 1 cut(s) 872
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 593, 750
BseGI GGATG 2 cut(s) 121, 307
BseLI CCNNNNNNNGG 1 cut(s) 792
BseMII CTCAG 3 cut(s) 154, 257, 390
BseNI ACTGG 1 cut(s) 872
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 237, 669
Bsh1236I CGCG 1 cut(s) 595
BshFI GGCC 2 cut(s) 532, 945
BslI CCNNNNNNNGG 1 cut(s) 792
BsnI GGCC 2 cut(s) 532, 945
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 4 cut(s) 388, 664, 707, 774
BspACI CCGC 3 cut(s) 201, 593, 595
BspANI GGCC 2 cut(s) 532, 945
BspCNI CTCAG 3 cut(s) 153, 256, 391
BspFNI CGCG 1 cut(s) 595
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 3 cut(s) 396, 672, 715
BspQI GCTCTTC 1 cut(s) 593
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 1 cut(s) 872
BssECI CCNNGG 2 cut(s) 593, 750
BssMI GATC 4 cut(s) 388, 664, 707, 774
BssSI CACGAG 1 cut(s) 965
BssT1I CCWWGG 1 cut(s) 750
Bst2BI CACGAG 1 cut(s) 965
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 578, 962
Bst6I CTCTTC 3 cut(s) 214, 495, 593
BstAUI TGTACA 1 cut(s) 97
BstDEI CTNAG 5 cut(s) 140, 221, 243, 399, 703
BstDSI CCRYGG 1 cut(s) 593
BstEII GGTNACC 2 cut(s) 269, 805
BstF5I GGATG 2 cut(s) 121, 307
BstFNI CGCG 1 cut(s) 595
BstKTI GATC 4 cut(s) 391, 667, 710, 777
BstMBI GATC 4 cut(s) 388, 664, 707, 774
BstMWI GCNNNNNNNGC 2 cut(s) 434, 485
BstNI CCWGG 1 cut(s) 453
BstPI GGTNACC 2 cut(s) 269, 805
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 2 cut(s) 423, 489
BstUI CGCG 1 cut(s) 595
BstV1I GCAGC 2 cut(s) 237, 669
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 2 cut(s) 664, 774
BstYI RGATCY 2 cut(s) 664, 774
BsuRI GGCC 2 cut(s) 532, 945
BtgI CCRYGG 1 cut(s) 593
BtsCI GGATG 2 cut(s) 121, 307
BtsIMutI CAGTG 2 cut(s) 429, 1004
CaiI CAGNNNCTG 1 cut(s) 431
Cfr13I GGNCC 1 cut(s) 943
Cfr42I CCGCGG 1 cut(s) 596
Csp6I GTAC 1 cut(s) 98
CviAII CATG 2 cut(s) 586, 661
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 5 cut(s) 140, 221, 243, 399, 703
DpnI GATC 4 cut(s) 390, 666, 709, 776
DpnII GATC 4 cut(s) 388, 664, 707, 774
EaeI YGGCCR 1 cut(s) 530
Eam1104I CTCTTC 3 cut(s) 214, 495, 593
EarI CTCTTC 3 cut(s) 214, 495, 593
Eco130I CCWWGG 1 cut(s) 750
Eco32I GATATC 2 cut(s) 766, 892
Eco57I CTGAAG 3 cut(s) 195, 453, 906
Eco91I GGTNACC 2 cut(s) 269, 805
EcoO65I GGTNACC 2 cut(s) 269, 805
EcoRII CCWGG 1 cut(s) 451
EcoRV GATATC 2 cut(s) 766, 892
EcoT14I CCWWGG 1 cut(s) 750
ErhI CCWWGG 1 cut(s) 750
FaeI CATG 2 cut(s) 589, 664
FatI CATG 2 cut(s) 585, 660
Fnu4HI GCNGC 2 cut(s) 226, 658
FokI GGATG 2 cut(s) 128, 314
Fsp4HI GCNGC 2 cut(s) 226, 658
FspBI CTAG 3 cut(s) 234, 626, 692
GluI GCNGC 2 cut(s) 226, 658
HaeIII GGCC 2 cut(s) 532, 945
Hin1II CATG 2 cut(s) 589, 664
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 9 cut(s) 130, 173, 188, 289, 316, 335, 629, 911, 977
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 5 cut(s) 16, 246, 388, 472, 770
Hpy188III TCNNGA 4 cut(s) 293, 320, 392, 965
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 3 cut(s) 39, 76, 798
HpyCH4III ACNGT 2 cut(s) 578, 962
HpyCH4V TGCA 2 cut(s) 35, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 485
HpyF3I CTNAG 5 cut(s) 140, 221, 243, 399, 703
Hsp92II CATG 2 cut(s) 589, 664
KspI CCGCGG 1 cut(s) 596
Kzo9I GATC 4 cut(s) 388, 664, 707, 774
LguI GCTCTTC 1 cut(s) 593
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 8 cut(s) 28, 45, 333, 438, 465, 741, 787, 885
Lsp1109I GCAGC 2 cut(s) 237, 669
LweI GCATC 1 cut(s) 148
MaeI CTAG 3 cut(s) 234, 626, 692
MaeIII GTNAC 6 cut(s) 127, 269, 723, 805, 856, 962
MalI GATC 4 cut(s) 390, 666, 709, 776
MboI GATC 4 cut(s) 388, 664, 707, 774
MboII GAAGA 7 cut(s) 201, 338, 512, 610, 899, 911, 914
MflI RGATCY 2 cut(s) 664, 774
MlsI TGGCCA 1 cut(s) 532
MluCI AATT 4 cut(s) 409, 546, 633, 972
MluNI TGGCCA 1 cut(s) 532
MlyI GAGTC 4 cut(s) 124, 182, 182, 344
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 6 cut(s) 228, 250, 487, 531, 786, 961
Mox20I TGGCCA 1 cut(s) 532
MroXI GAANNNNTTC 2 cut(s) 208, 976
MscI TGGCCA 1 cut(s) 532
MseI TTAA 2 cut(s) 641, 987
MslI CAYNNNNRTG 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 532
MspA1I CMGCKG 1 cut(s) 595
MspR9I CCNGG 1 cut(s) 453
MvaI CCWGG 1 cut(s) 453
MvnI CGCG 1 cut(s) 595
MwoI GCNNNNNNNGC 2 cut(s) 434, 485
NdeII GATC 4 cut(s) 388, 664, 707, 774
NlaIII CATG 2 cut(s) 589, 664
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 127, 962
PciSI GCTCTTC 1 cut(s) 593
PdmI GAANNNNTTC 2 cut(s) 208, 976
PfeI GAWTC 5 cut(s) 289, 316, 629, 911, 977
PkrI GCNGC 2 cut(s) 227, 659
PleI GAGTC 4 cut(s) 124, 181, 182, 343
PpsI GAGTC 4 cut(s) 124, 181, 182, 343
Psp6I CCWGG 1 cut(s) 451
PspEI GGTNACC 2 cut(s) 269, 805
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 2 cut(s) 664, 774
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 93
SacII CCGCGG 1 cut(s) 596
SapI GCTCTTC 1 cut(s) 593
SaqAI TTAA 2 cut(s) 641, 987
SatI GCNGC 2 cut(s) 226, 658
Sau3AI GATC 4 cut(s) 388, 664, 707, 774
Sau96I GGNCC 1 cut(s) 943
SchI GAGTC 4 cut(s) 124, 182, 182, 344
ScrFI CCNGG 1 cut(s) 453
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 2 cut(s) 423, 489
Sfr303I CCGCGG 1 cut(s) 596
SgrBI CCGCGG 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 93
SpeI ACTAGT 1 cut(s) 691
Sse9I AATT 4 cut(s) 409, 546, 633, 972
SsiI CCGC 3 cut(s) 201, 593, 595
SspI AATATT 1 cut(s) 832
SspMI CTAG 3 cut(s) 234, 626, 692
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 1 cut(s) 750
TaaI ACNGT 2 cut(s) 578, 962
TaqI TCGA 2 cut(s) 133, 791
TasI AATT 4 cut(s) 409, 546, 633, 972
TatI WGTACW 1 cut(s) 97
TfiI GAWTC 5 cut(s) 289, 316, 629, 911, 977
Tru1I TTAA 2 cut(s) 641, 987
Tru9I TTAA 2 cut(s) 641, 987
TscAI CASTG 2 cut(s) 436, 1011
TseFI GTSAC 2 cut(s) 127, 962
TseI GCWGC 2 cut(s) 225, 657
Tsp45I GTSAC 2 cut(s) 127, 962
TspDTI ATGAA 6 cut(s) 12, 99, 132, 459, 531, 749
TspRI CASTG 2 cut(s) 436, 1011
XmnI GAANNNNTTC 2 cut(s) 208, 976
XspI CTAG 3 cut(s) 234, 626, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.