Rh4BG140500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017148
Physical Location & Seq
Forward (+)
24907454 .. 24908482
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG140500.1

Sequence Viewer

Length: 1029 bp
ATGAAATTCAATGGAAGTGATATTATGAAAAGTAATATTGATCAGAGAGAAGATGAGTATTGTGTCAGACTAAGATCAATTGGTGCTTATCAAAATGAACCTAGTACCAAAAAAGATGATCCTATATGCAAAAGCAGCAACAAGGAAAAGTCAGTTGCTGCCGTACTTTCCCATACATCGGAGAAGGAACACCATATTGATAATCAGTTGGGTAAAGAGAGAAGTTTTAGCGATAAAGAGTCTATGTGGTTGTCTTCAGATTGTTCATCACCTTCTGCATTTTTCAGGGAGTATAGATGGTCTGGTTCCTTCCATCTCTCACTTGATGAACACAAGAATGTACACACAGATTTGATGGATGAAAAAGTAGCGACTCGGCTACTTAGTTCAGCTACGAATGATGCAAAACCAAGAGAGTCGTTGTGTGATGACTCAACAAGTTGCGGAAACTCTTCAGCTCCTCTTAGCAGCACACCTAGTTCCTCTCAGATTTTAGATTTGGAGAGAATAGGTTACCAAGTATCTTTATTGAATCTTGATGGGGATGATTACAAATGGATTCCAGATACAGAAGTTGAGTCATATTGTCTTCAATATTGTTTTCACTCTCCATCATACAAGACTAGGTCGGATCACGAAGCTGAGTTCTCTAATTCTTGTATTTCTACAGCCACTGAAGCACAAAATGAAAAACCAGGATATTGTTTTCCATCAGAACAAGCTTCAAAAGCTGTAGAGGTTGAAGAGTTGAATACAAATGAACCTCTTTTTTGGCCATTTGCTCAAAAAATTGATTGGAGTGCCGAAGCAACTTGGAACTGTTTTTCCATGTCACCGCGGAAGAGCATAGCAACTATTGGAACTCCACTTGATTCAATTATATTAAGGCGTTATAGGGGCAGCATGGATCTCAAACAAGAGCGTAGGAGAAAACTAGTGTTTAGCTTAGGATCAACAACATCAAAGATACCAGATATGAAGCAAAGCTACACCAAGGGTATCAAGGATATCCGAGAGATCTGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

38.77

Weight (kDa)

5.51

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05894 AT2G31480
prunus_persica Prupe.1G190600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407081
rosa_laevigata RLG00000008738
rosa_multiflora Rmu_sc0000600.1_g000001
rosa_roxburghii Rroxscaffold_5G00351810
rosa_rugosa Rorug04G0077900
rosa_samantha Rh4AG142600 Rh4BG140500 Rh4CG149100 Rh4DG136700
rosa_wichuraiana Rw4G011620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 838
AciI CCGC 3 cut(s) 444, 836, 838
AclWI GGATC 4 cut(s) 113, 639, 915, 958
AcoI YGGCCR 1 cut(s) 773
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 3 cut(s) 240, 438, 696
AfaI GTAC 4 cut(s) 106, 165, 342, 1024
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 7 cut(s) 10, 532, 593, 726, 743, 751, 876
AhlI ACTAGT 1 cut(s) 934
AjnI CCWGG 1 cut(s) 694
AloI GAACNNNNNNTCC 2 cut(s) 809, 841
AluBI AGCT 7 cut(s) 392, 458, 641, 722, 731, 945, 987
AluI AGCT 7 cut(s) 392, 458, 641, 722, 731, 945, 987
AlwI GGATC 4 cut(s) 113, 639, 915, 958
AlwNI CAGNNNCTG 2 cut(s) 158, 674
AoxI GGCC 1 cut(s) 773
ApeKI GCWGC 4 cut(s) 135, 158, 468, 900
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 451
AsuHPI GGTGA 2 cut(s) 261, 825
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BalI TGGCCA 1 cut(s) 775
BarI GAAGNNNNNNTAC 2 cut(s) 971, 1003
BbsI GAAGAC 2 cut(s) 246, 581
BbvI GCAGC 4 cut(s) 145, 147, 480, 912
BccI CCATC 6 cut(s) 291, 321, 349, 533, 619, 718
BceAI ACGGC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 1 cut(s) 40
BcuI ACTAGT 1 cut(s) 934
BfaI CTAG 4 cut(s) 102, 477, 624, 935
BfmI CTRYAG 2 cut(s) 666, 732
BglII AGATCT 1 cut(s) 1017
BisI GCNGC 4 cut(s) 136, 159, 469, 901
BlsI GCNGC 4 cut(s) 137, 160, 470, 902
Bme1390I CCNGG 1 cut(s) 696
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 696
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 2 cut(s) 246, 581
Bpu10I CCTNAGC 1 cut(s) 946
BsaAI YACGTR 1 cut(s) 1026
BsaJI CCNNGG 2 cut(s) 836, 993
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 836, 993
BseGI GGATG 2 cut(s) 364, 550
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 500, 633
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 4 cut(s) 145, 147, 480, 912
Bsh1236I CGCG 1 cut(s) 838
BshFI GGCC 1 cut(s) 775
BslI CCNNNNNNNGG 1 cut(s) 178
BsnI GGCC 1 cut(s) 775
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 7 cut(s) 40, 74, 118, 631, 907, 950, 1017
BspACI CCGC 3 cut(s) 444, 836, 838
BspANI GGCC 1 cut(s) 775
BspCNI CTCAG 2 cut(s) 499, 634
BspFNI CGCG 1 cut(s) 838
BspLI GGNNCC 1 cut(s) 307
BspPI GGATC 4 cut(s) 113, 639, 915, 958
BspQI GCTCTTC 1 cut(s) 836
BsrGI TGTACA 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 836, 993
BssMI GATC 7 cut(s) 40, 74, 118, 631, 907, 950, 1017
BssT1I CCWWGG 1 cut(s) 993
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 1 cut(s) 821
Bst6I CTCTTC 3 cut(s) 457, 738, 836
BstAUI TGTACA 1 cut(s) 340
BstBAI YACGTR 1 cut(s) 1026
BstDEI CTNAG 6 cut(s) 71, 383, 464, 486, 642, 946
BstDSI CCRYGG 1 cut(s) 836
BstEII GGTNACC 1 cut(s) 512
BstF5I GGATG 2 cut(s) 364, 550
BstFNI CGCG 1 cut(s) 838
BstKTI GATC 7 cut(s) 43, 77, 121, 634, 910, 953, 1020
BstMBI GATC 7 cut(s) 40, 74, 118, 631, 907, 950, 1017
BstMWI GCNNNNNNNGC 3 cut(s) 135, 677, 728
BstNI CCWGG 1 cut(s) 696
BstPI GGTNACC 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 2 cut(s) 666, 732
BstSNI TACGTA 1 cut(s) 1026
BstUI CGCG 1 cut(s) 838
BstV1I GCAGC 4 cut(s) 145, 147, 480, 912
BstV2I GAAGAC 2 cut(s) 246, 581
BstX2I RGATCY 2 cut(s) 907, 1017
BstYI RGATCY 2 cut(s) 907, 1017
BsuRI GGCC 1 cut(s) 775
BtgI CCRYGG 1 cut(s) 836
BtsCI GGATG 2 cut(s) 364, 550
BtsIMutI CAGTG 1 cut(s) 672
CaiI CAGNNNCTG 2 cut(s) 158, 674
Cfr42I CCGCGG 1 cut(s) 839
Csp6I GTAC 4 cut(s) 105, 164, 341, 1023
CviAII CATG 2 cut(s) 829, 904
CviQI GTAC 4 cut(s) 105, 164, 341, 1023
DdeI CTNAG 6 cut(s) 71, 383, 464, 486, 642, 946
DpnI GATC 7 cut(s) 42, 76, 120, 633, 909, 952, 1019
DpnII GATC 7 cut(s) 40, 74, 118, 631, 907, 950, 1017
EaeI YGGCCR 1 cut(s) 773
Eam1104I CTCTTC 3 cut(s) 457, 738, 836
EarI CTCTTC 3 cut(s) 457, 738, 836
Eco105I TACGTA 1 cut(s) 1026
Eco130I CCWWGG 1 cut(s) 993
Eco32I GATATC 1 cut(s) 1009
Eco57I CTGAAG 3 cut(s) 240, 438, 696
Eco91I GGTNACC 1 cut(s) 512
EcoO65I GGTNACC 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 694
EcoRV GATATC 1 cut(s) 1009
EcoT14I CCWWGG 1 cut(s) 993
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 2 cut(s) 832, 907
FatI CATG 2 cut(s) 828, 903
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 4 cut(s) 136, 159, 469, 901
FokI GGATG 2 cut(s) 371, 557
Fsp4HI GCNGC 4 cut(s) 136, 159, 469, 901
FspBI CTAG 4 cut(s) 102, 477, 624, 935
GluI GCNGC 4 cut(s) 136, 159, 469, 901
HaeIII GGCC 1 cut(s) 775
Hin1II CATG 2 cut(s) 832, 907
HindIII AAGCTT 1 cut(s) 720
HinfI GANTC 8 cut(s) 239, 373, 416, 431, 532, 559, 578, 872
HphI GGTGA 2 cut(s) 261, 825
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 8 cut(s) 45, 68, 181, 259, 489, 631, 715, 1013
Hpy188III TCNNGA 3 cut(s) 536, 563, 635
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 3 cut(s) 178, 282, 319
HpyCH4III ACNGT 1 cut(s) 821
HpyCH4IV ACGT 1 cut(s) 1025
HpyCH4V TGCA 3 cut(s) 129, 278, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 677, 728
HpyF3I CTNAG 6 cut(s) 71, 383, 464, 486, 642, 946
HpySE526I ACGT 1 cut(s) 1025
Hsp92II CATG 2 cut(s) 832, 907
Ksp22I TGATCA 1 cut(s) 40
KspI CCGCGG 1 cut(s) 839
Kzo9I GATC 7 cut(s) 40, 74, 118, 631, 907, 950, 1017
LguI GCTCTTC 1 cut(s) 836
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 6 cut(s) 271, 288, 576, 681, 708, 984
Lsp1109I GCAGC 4 cut(s) 145, 147, 480, 912
LweI GCATC 1 cut(s) 391
MaeI CTAG 4 cut(s) 102, 477, 624, 935
MaeII ACGT 1 cut(s) 1025
MaeIII GTNAC 2 cut(s) 512, 831
MalI GATC 7 cut(s) 42, 76, 120, 633, 909, 952, 1019
MboI GATC 7 cut(s) 40, 74, 118, 631, 907, 950, 1017
MboII GAAGA 6 cut(s) 62, 246, 444, 581, 755, 853
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 2 cut(s) 907, 1017
MlsI TGGCCA 1 cut(s) 775
MluCI AATT 5 cut(s) 5, 78, 652, 789, 876
MluNI TGGCCA 1 cut(s) 775
MlyI GAGTC 5 cut(s) 248, 367, 425, 425, 587
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 4 cut(s) 471, 493, 730, 774
Mox20I TGGCCA 1 cut(s) 775
MroXI GAANNNNTTC 1 cut(s) 451
MscI TGGCCA 1 cut(s) 775
MseI TTAA 1 cut(s) 884
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 775
MspA1I CMGCKG 1 cut(s) 838
MspR9I CCNGG 1 cut(s) 696
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 1 cut(s) 838
MwoI GCNNNNNNNGC 3 cut(s) 135, 677, 728
NdeII GATC 7 cut(s) 40, 74, 118, 631, 907, 950, 1017
NlaIII CATG 2 cut(s) 832, 907
NlaIV GGNNCC 1 cut(s) 307
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 831
PciSI GCTCTTC 1 cut(s) 836
PdmI GAANNNNTTC 1 cut(s) 451
PfeI GAWTC 3 cut(s) 532, 559, 872
PflFI GACNNNGTC 1 cut(s) 625
PkrI GCNGC 4 cut(s) 137, 160, 470, 902
PleI GAGTC 5 cut(s) 247, 367, 424, 425, 586
PpsI GAGTC 5 cut(s) 247, 367, 424, 425, 586
Ppu21I YACGTR 1 cut(s) 1026
Psp6I CCWGG 1 cut(s) 694
PspEI GGTNACC 1 cut(s) 512
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 1 cut(s) 307
PstNI CAGNNNCTG 2 cut(s) 158, 674
PsuI RGATCY 2 cut(s) 907, 1017
PsyI GACNNNGTC 1 cut(s) 625
RsaI GTAC 4 cut(s) 106, 165, 342, 1024
RsaNI GTAC 4 cut(s) 105, 164, 341, 1023
RseI CAYNNNNRTG 1 cut(s) 336
SacII CCGCGG 1 cut(s) 839
SapI GCTCTTC 1 cut(s) 836
SaqAI TTAA 1 cut(s) 884
SatI GCNGC 4 cut(s) 136, 159, 469, 901
Sau3AI GATC 7 cut(s) 40, 74, 118, 631, 907, 950, 1017
SchI GAGTC 5 cut(s) 248, 367, 425, 425, 587
ScrFI CCNGG 1 cut(s) 696
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 2 cut(s) 666, 732
Sfr303I CCGCGG 1 cut(s) 839
SgrBI CCGCGG 1 cut(s) 839
SmiMI CAYNNNNRTG 1 cut(s) 336
SnaBI TACGTA 1 cut(s) 1026
SpeI ACTAGT 1 cut(s) 934
Sse9I AATT 5 cut(s) 5, 78, 652, 789, 876
SsiI CCGC 3 cut(s) 444, 836, 838
SspI AATATT 2 cut(s) 37, 596
SspMI CTAG 4 cut(s) 102, 477, 624, 935
StyD4I CCNGG 1 cut(s) 694
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 1 cut(s) 821
TaiI ACGT 1 cut(s) 1028
TasI AATT 5 cut(s) 5, 78, 652, 789, 876
TatI WGTACW 1 cut(s) 340
TfiI GAWTC 3 cut(s) 532, 559, 872
Tru1I TTAA 1 cut(s) 884
Tru9I TTAA 1 cut(s) 884
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 1 cut(s) 831
TseI GCWGC 4 cut(s) 135, 158, 468, 900
Tsp45I GTSAC 1 cut(s) 831
TspDTI ATGAA 9 cut(s) 17, 41, 111, 255, 342, 375, 702, 774, 992
TspRI CASTG 1 cut(s) 679
Tth111I GACNNNGTC 1 cut(s) 625
XapI RAATTY 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 451
XspI CTAG 4 cut(s) 102, 477, 624, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.