Prupe.1G190600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017148
Physical Location & Seq
Reverse (-)
17591892 .. 17593681
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G190600.1

Sequence Viewer

Length: 1548 bp
ATGAATATCTCAGACCAAAGAGAAGATGAGTATCTCAGACCAAGATCAAATGGTGCTAAAAGTGCACCCATTAGATTACGTATGACGAAGGCAGGTCCTCGTCTATGCGAAAGCAGCAATAAGGATGCGGCTGCAGCTGCTTTCTGCCAATCATCAGAAGAAGATCTTGATCTATACAAACAATTTGGTAACGACAGAGAGTCGATGTGGTTGTCTACAGATTGTTCATCACCTTCTGCCTTTTTTAGAGAGTATAGGTGGTCTGATTCGTTTCACTCAAATGAGCTGTTGTTACCTTCTTGGTTGTCATTGCTGGCAAGAGAAAATCCTATGGAAGAGGCATCTAATTTGCCTATGCTGAAAACTTCTCGAGATGAAGACAAGAATTTAGAGGAAGATATGAAGGATGAAAAGATAGTTACTTGGCTACTTGGCACAAAATCTGATTCTTCTCAGAGTCTAGATTTCGAGAGGATAGGTTTTCATGTATCTTTATTGAATCTTGATGGAGAGGATAACAAATTGATATCAGGTACAGATCCAAAGTTGGATTATTTTCTGTCTGATTTTCCAAGTCCATCTTACAAAAGTAATTGGGGTCATGAATTTCAGTCTTGTAATTTTAGTAGTGGAGCACAAAGTGAAACATCAGTACGTGATTTTTCATCAGAGCATGCTTCTGAAGCTGCAGATTGCTTAGATCTAAATACTGATGAACCACTTTTCTGGCCATACGAACAAAAAATCACTTGGAATTCTGAAGCAACTTGGAATTACTTTTCCATGTCGCCGCGGAAGGACATAAGTATAACAACTTTTGGAAGTCCACCAGATTCAGTTCAATTAAGCCACCATGATAGGAGCATAGGTCTCAAAGAAGGGCAGAGGAGAAGTCTAATGTTCAGCTCAGGATCAGCAGCATCAAAGATAATGGAATTAAAACAAAGATACAACAAGGGTGCACGCAGGACCAATACTTTGCCTTCAAGGTTGAGCAGGGCAACCAAAACTTCTGAGAAAAGTGTACCTTTAAACATGAAAGATGATACTGCAGAACTCAAAGATAGAAAAGCTCATGTTGAAAGACCAGTCGGTATGGTTAAAGCTCCCATAGAAAAAGGTTCTGCTTCAAAAGAACTTCCAATTGAGATGTTCCTTGGCCTTGATGAGTTTGACGGGCAGGAGGGAGTTGATTCAGAATTTGATAAAGATGACTTCTCACTGCATGTGTCTCTCCGCAGGATTCATGTGCGTCCAATGTATAGAGAAAAATTGATAGATGTATACAGACAACAAGTATTTCTTAAATTGGAACAAATCATGGCCTGCCTTGAACCTCAGCAGCACTCAAATCAAGTCACCTTATGTGTACAGATAATACCATTTAATCCAGACTTTGAAGTGAAAGTGGGTAGAACAGTCCCAGAAGAAATGGTGCCCACAAACACAGCTTGTGAATCACATGAAAACAATGATTGTTTTGAAAAACTTTGTAAGAACAAAGCTCTTGGTAGCATGATGATGGATGTAACAATAAAAAAGCTAAAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

516

Amino Acids

58.8

Weight (kDa)

5.28

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05894 AT2G31480
prunus_persica Prupe.1G190600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407081
rosa_laevigata RLG00000008738
rosa_multiflora Rmu_sc0000600.1_g000001
rosa_roxburghii Rroxscaffold_5G00351810
rosa_rugosa Rorug04G0077900
rosa_samantha Rh4AG142600 Rh4BG140500 Rh4CG149100 Rh4DG136700
rosa_wichuraiana Rw4G011620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 1435
AccI GTMKAC 2 cut(s) 215, 1284
AccII CGCG 1 cut(s) 793
AciI CCGC 4 cut(s) 128, 791, 793, 1237
AclWI GGATC 2 cut(s) 533, 919
AcoI YGGCCR 1 cut(s) 728
AcsI RAATTY 4 cut(s) 385, 605, 754, 1199
AcuI CTGAAG 2 cut(s) 702, 780
AdeI CACNNNGTG 1 cut(s) 641
AfaI GTAC 4 cut(s) 535, 654, 1026, 1371
AgsI TTSAA 8 cut(s) 499, 842, 987, 1082, 1131, 1334, 1400, 1484
AhdI GACNNNNNGTC 1 cut(s) 199
AluBI AGCT 9 cut(s) 137, 286, 686, 906, 1073, 1106, 1451, 1505, 1543
AluI AGCT 9 cut(s) 137, 286, 686, 906, 1073, 1106, 1451, 1505, 1543
Alw21I GWGCWC 3 cut(s) 67, 637, 964
Alw26I GTCTC 2 cut(s) 875, 1236
Alw44I GTGCAC 2 cut(s) 63, 960
AlwI GGATC 2 cut(s) 533, 919
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 3 cut(s) 728, 1159, 1323
ApaLI GTGCAC 2 cut(s) 63, 960
ApeKI GCWGC 7 cut(s) 114, 131, 134, 137, 686, 917, 1342
ApoI RAATTY 4 cut(s) 385, 605, 754, 1199
ArsI GACNNNNNNTTYG 2 cut(s) 961, 993
AspS9I GGNCC 2 cut(s) 95, 969
AsuHPI GGTGA 2 cut(s) 222, 1351
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 2 cut(s) 95, 969
BaeGI GKGCMC 3 cut(s) 67, 964, 1440
BalI TGGCCA 1 cut(s) 730
BanI GGYRCC 1 cut(s) 1435
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 3 cut(s) 67, 637, 964
BbvCI CCTCAGC 1 cut(s) 1338
BbvI GCAGC 7 cut(s) 118, 124, 126, 146, 673, 929, 1354
BccI CCATC 3 cut(s) 500, 586, 1516
BcoDI GTCTC 2 cut(s) 875, 1236
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 4 cut(s) 132, 216, 687, 1050
BfuAI ACCTGC 1 cut(s) 83
BglII AGATCT 2 cut(s) 163, 700
BisI GCNGC 9 cut(s) 115, 129, 132, 135, 138, 687, 791, 918, 1343
BlsI GCNGC 9 cut(s) 116, 130, 133, 136, 139, 688, 792, 919, 1344
Bme18I GGWCC 2 cut(s) 95, 969
BmeRI GACNNNNNGTC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 2 cut(s) 95, 969
BmiI GGNNCC 1 cut(s) 1437
BmsI GCATC 3 cut(s) 115, 350, 929
BpiI GAAGAC 1 cut(s) 384
Bpu10I CCTNAGC 2 cut(s) 907, 1338
BsaAI YACGTR 2 cut(s) 80, 656
BsaBI GATNNNNATC 2 cut(s) 30, 168
BsaI GGTCTC 1 cut(s) 875
BsaJI CCNNGG 2 cut(s) 791, 1156
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bse1I ACTGG 1 cut(s) 1088
Bse3DI GCAATG 1 cut(s) 308
Bse8I GATNNNNATC 2 cut(s) 30, 168
BseDI CCNNGG 2 cut(s) 791, 1156
BseGI GGATG 3 cut(s) 130, 412, 1531
BseJI GATNNNNATC 2 cut(s) 30, 168
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 6 cut(s) 24, 49, 467, 921, 1005, 1352
BseNI ACTGG 1 cut(s) 1088
BseRI GAGGAG 1 cut(s) 901
BseSI GKGCMC 3 cut(s) 67, 964, 1440
BseXI GCAGC 7 cut(s) 118, 124, 126, 146, 673, 929, 1354
Bsh1236I CGCG 1 cut(s) 793
BshFI GGCC 3 cut(s) 730, 1161, 1325
BshNI GGYRCC 1 cut(s) 1435
BsiHKAI GWGCWC 3 cut(s) 67, 637, 964
BsiHKCI CYCGRG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 1406
BsmAI GTCTC 2 cut(s) 875, 1236
BsmFI GGGAC 1 cut(s) 1406
BsnI GGCC 3 cut(s) 730, 1161, 1325
Bso31I GGTCTC 1 cut(s) 875
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 4 cut(s) 67, 637, 964, 1440
Bsp1407I TGTACA 1 cut(s) 1369
Bsp143I GATC 6 cut(s) 44, 163, 169, 538, 700, 911
BspACI CCGC 4 cut(s) 128, 791, 793, 1237
BspANI GGCC 3 cut(s) 730, 1161, 1325
BspCNI CTCAG 6 cut(s) 23, 48, 466, 920, 1006, 1351
BspFNI CGCG 1 cut(s) 793
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 1437
BspMAI CTGCAG 3 cut(s) 136, 691, 1054
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 2 cut(s) 533, 919
BspT107I GGYRCC 1 cut(s) 1435
BspTNI GGTCTC 1 cut(s) 875
BsrDI GCAATG 1 cut(s) 308
BsrGI TGTACA 1 cut(s) 1369
BsrI ACTGG 1 cut(s) 1088
BssECI CCNNGG 2 cut(s) 791, 1156
BssMI GATC 6 cut(s) 44, 163, 169, 538, 700, 911
BssNAI GTATAC 1 cut(s) 1285
BssT1I CCWWGG 1 cut(s) 1156
Bst1107I GTATAC 1 cut(s) 1285
Bst4CI ACNGT 1 cut(s) 1420
Bst6I CTCTTC 1 cut(s) 330
BstAUI TGTACA 1 cut(s) 1369
BstBAI YACGTR 2 cut(s) 80, 656
BstC8I GCNNGC 4 cut(s) 315, 675, 964, 1327
BstDEI CTNAG 7 cut(s) 10, 35, 453, 697, 907, 1014, 1338
BstDSI CCRYGG 1 cut(s) 791
BstF5I GGATG 3 cut(s) 130, 412, 1531
BstFNI CGCG 1 cut(s) 793
BstKTI GATC 6 cut(s) 47, 166, 172, 541, 703, 914
BstMAI GTCTC 2 cut(s) 875, 1236
BstMBI GATC 6 cut(s) 44, 163, 169, 538, 700, 911
BstMWI GCNNNNNNNGC 5 cut(s) 62, 114, 134, 137, 683
BstNSI RCATGY 2 cut(s) 677, 1229
BstSFI CTRYAG 4 cut(s) 132, 216, 687, 1050
BstSLI GKGCMC 3 cut(s) 67, 964, 1440
BstSNI TACGTA 1 cut(s) 80
BstUI CGCG 1 cut(s) 793
BstV1I GCAGC 7 cut(s) 118, 124, 126, 146, 673, 929, 1354
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 3 cut(s) 163, 538, 700
BstXI CCANNNNNNTGG 1 cut(s) 726
BstYI RGATCY 3 cut(s) 163, 538, 700
BstZ17I GTATAC 1 cut(s) 1285
BsuRI GGCC 3 cut(s) 730, 1161, 1325
BtgI CCRYGG 1 cut(s) 791
BtsCI GGATG 3 cut(s) 130, 412, 1531
BtsI GCAGTG 1 cut(s) 1220
BtsIMutI CAGTG 1 cut(s) 1220
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 4 cut(s) 315, 675, 964, 1327
CciI TCATGA 1 cut(s) 601
Cfr13I GGNCC 2 cut(s) 95, 969
Cfr42I CCGCGG 1 cut(s) 794
CseI GACGC 1 cut(s) 1241
Csp6I GTAC 4 cut(s) 534, 653, 1025, 1370
CviQI GTAC 4 cut(s) 534, 653, 1025, 1370
DdeI CTNAG 7 cut(s) 10, 35, 453, 697, 907, 1014, 1338
DpnI GATC 6 cut(s) 46, 165, 171, 540, 702, 913
DpnII GATC 6 cut(s) 44, 163, 169, 538, 700, 911
DraI TTTAAA 1 cut(s) 1032
DraIII CACNNNGTG 1 cut(s) 641
DriI GACNNNNNGTC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 728
Eam1104I CTCTTC 1 cut(s) 330
Eam1105I GACNNNNNGTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 330
Eco105I TACGTA 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 1156
Eco31I GGTCTC 1 cut(s) 875
Eco32I GATATC 1 cut(s) 528
Eco47I GGWCC 2 cut(s) 95, 969
Eco57I CTGAAG 2 cut(s) 702, 780
Eco88I CYCGRG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 754
EcoRV GATATC 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 1156
ErhI CCWWGG 1 cut(s) 1156
FalI AAGNNNNNCTT 8 cut(s) 150, 182, 565, 597, 1012, 1044, 1287, 1319
FaqI GGGAC 1 cut(s) 1406
FblI GTMKAC 2 cut(s) 215, 1284
Fnu4HI GCNGC 9 cut(s) 115, 129, 132, 135, 138, 687, 791, 918, 1343
FokI GGATG 3 cut(s) 137, 419, 1538
Fsp4HI GCNGC 9 cut(s) 115, 129, 132, 135, 138, 687, 791, 918, 1343
FspBI CTAG 1 cut(s) 461
GluI GCNGC 9 cut(s) 115, 129, 132, 135, 138, 687, 791, 918, 1343
HaeIII GGCC 3 cut(s) 730, 1161, 1325
HgaI GACGC 1 cut(s) 1241
HinfI GANTC 9 cut(s) 200, 266, 446, 457, 499, 833, 1193, 1243, 1457
HphI GGTGA 2 cut(s) 222, 1351
Hpy166II GTNNAC 7 cut(s) 65, 216, 827, 962, 1025, 1285, 1370
Hpy188III TCNNGA 9 cut(s) 167, 369, 371, 461, 469, 503, 602, 909, 1391
Hpy8I GTNNAC 7 cut(s) 65, 216, 827, 962, 1025, 1285, 1370
HpyAV CCTTC 7 cut(s) 82, 243, 306, 397, 790, 872, 993
HpyCH4III ACNGT 1 cut(s) 1420
HpyCH4IV ACGT 2 cut(s) 79, 655
HpyCH4V TGCA 6 cut(s) 65, 134, 689, 962, 1052, 1225
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 114, 134, 137, 683
HpyF3I CTNAG 7 cut(s) 10, 35, 453, 697, 907, 1014, 1338
HpySE526I ACGT 2 cut(s) 79, 655
KspI CCGCGG 1 cut(s) 794
Kzo9I GATC 6 cut(s) 44, 163, 169, 538, 700, 911
LmnI GCTCC 3 cut(s) 632, 861, 1111
Lsp1109I GCAGC 7 cut(s) 118, 124, 126, 146, 673, 929, 1354
LweI GCATC 3 cut(s) 115, 350, 929
MaeI CTAG 1 cut(s) 461
MaeII ACGT 2 cut(s) 79, 655
MaeIII GTNAC 5 cut(s) 188, 291, 418, 1357, 1528
MalI GATC 6 cut(s) 46, 165, 171, 540, 702, 913
MboI GATC 6 cut(s) 44, 163, 169, 538, 700, 911
MboII GAAGA 8 cut(s) 35, 170, 173, 347, 389, 407, 441, 1439
MfeI CAATTG 1 cut(s) 1143
MflI RGATCY 3 cut(s) 163, 538, 700
MhlI GDGCHC 4 cut(s) 67, 637, 964, 1440
MlsI TGGCCA 1 cut(s) 730
MluNI TGGCCA 1 cut(s) 730
MlyI GAGTC 2 cut(s) 209, 466
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 8 cut(s) 108, 331, 385, 465, 505, 879, 1177, 1347
Mox20I TGGCCA 1 cut(s) 730
MscI TGGCCA 1 cut(s) 730
MseI TTAA 6 cut(s) 845, 938, 1031, 1101, 1305, 1386
MslI CAYNNNNRTG 2 cut(s) 279, 1520
Msp20I TGGCCA 1 cut(s) 730
MspA1I CMGCKG 2 cut(s) 137, 793
MunI CAATTG 1 cut(s) 1143
MvnI CGCG 1 cut(s) 793
MwoI GCNNNNNNNGC 5 cut(s) 62, 114, 134, 137, 683
NdeII GATC 6 cut(s) 44, 163, 169, 538, 700, 911
NlaIV GGNNCC 1 cut(s) 1437
NmuCI GTSAC 1 cut(s) 1357
NspI RCATGY 2 cut(s) 677, 1229
PaeI GCATGC 1 cut(s) 677
PaeR7I CTCGAG 1 cut(s) 369
PagI TCATGA 1 cut(s) 601
PfeI GAWTC 7 cut(s) 266, 446, 499, 833, 1193, 1243, 1457
PkrI GCNGC 9 cut(s) 116, 130, 133, 136, 139, 688, 792, 919, 1344
PleI GAGTC 2 cut(s) 208, 465
PpsI GAGTC 2 cut(s) 208, 465
Ppu21I YACGTR 2 cut(s) 80, 656
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 1437
PspPI GGNCC 2 cut(s) 95, 969
PspPPI RGGWCCY 1 cut(s) 95
PstI CTGCAG 3 cut(s) 136, 691, 1054
PsuI RGATCY 3 cut(s) 163, 538, 700
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 4 cut(s) 535, 654, 1026, 1371
RsaNI GTAC 4 cut(s) 534, 653, 1025, 1370
RseI CAYNNNNRTG 2 cut(s) 279, 1520
SacII CCGCGG 1 cut(s) 794
SaqAI TTAA 6 cut(s) 845, 938, 1031, 1101, 1305, 1386
SatI GCNGC 9 cut(s) 115, 129, 132, 135, 138, 687, 791, 918, 1343
Sau3AI GATC 6 cut(s) 44, 163, 169, 538, 700, 911
Sau96I GGNCC 2 cut(s) 95, 969
SchI GAGTC 2 cut(s) 209, 466
SduI GDGCHC 4 cut(s) 67, 637, 964, 1440
SfaNI GCATC 3 cut(s) 115, 350, 929
SfcI CTRYAG 4 cut(s) 132, 216, 687, 1050
Sfr274I CTCGAG 1 cut(s) 369
Sfr303I CCGCGG 1 cut(s) 794
SgrBI CCGCGG 1 cut(s) 794
SinI GGWCC 2 cut(s) 95, 969
SlaI CTCGAG 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 279, 1520
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
SnaBI TACGTA 1 cut(s) 80
SphI GCATGC 1 cut(s) 677
SsiI CCGC 4 cut(s) 128, 791, 793, 1237
SspMI CTAG 1 cut(s) 461
StyI CCWWGG 1 cut(s) 1156
TaaI ACNGT 1 cut(s) 1420
TaiI ACGT 2 cut(s) 82, 658
TaqI TCGA 3 cut(s) 203, 370, 468
TatI WGTACW 1 cut(s) 1369
TauI GCSGC 2 cut(s) 131, 793
TfiI GAWTC 7 cut(s) 266, 446, 499, 833, 1193, 1243, 1457
Tru1I TTAA 6 cut(s) 845, 938, 1031, 1101, 1305, 1386
Tru9I TTAA 6 cut(s) 845, 938, 1031, 1101, 1305, 1386
TscAI CASTG 1 cut(s) 1227
TseFI GTSAC 1 cut(s) 1357
TseI GCWGC 7 cut(s) 114, 131, 134, 137, 686, 917, 1342
Tsp45I GTSAC 1 cut(s) 1357
TspRI CASTG 1 cut(s) 1227
VneI GTGCAC 2 cut(s) 63, 960
VpaK11BI GGWCC 2 cut(s) 95, 969
XapI RAATTY 4 cut(s) 385, 605, 754, 1199
XbaI TCTAGA 1 cut(s) 460
XceI RCATGY 2 cut(s) 677, 1229
XhoI CTCGAG 1 cut(s) 369
XmiI GTMKAC 2 cut(s) 215, 1284
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.