AT2G31510

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
13416551 .. 13421571
5021 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31510.3

Sequence Viewer

Length: 1689 bp
ATGGATTCTGAAGAAGACATGCTCGATGCGCACGATATGGAGTCTGGAGAGGATGATTTCTACAGCGGTGGAACTGATGATTGTAATGATAGTGATGATGGTGAACCTGATTATGGGTTTGTTGAGGAAGATGCTGATGATTCTGCTATGATCGCCTCTCATCGCTCTCAGAAAAACTTTTGTGTTCTGAGGGAAGAAGATATTCGCAGGCATCAGATGGATAATATTGAACGAGTTTCCGTTGTTCTCTCGATAACTGAGGTTGAAGCGAGTATTCTACTTCGTCACTTTCACTGGAGTGTCGGTAGAGTTCATGATGAGTGGTTTGCTGATGAAGAGAGAGTTCGGAAGACTGTTGGCATATTGGAGAGTCATGTTGTTCCACCATCTGATGACAGTGAACTTACATGTGGAATCTGTTTCGATTCCTACCCTCCTGAGAAAATCGCTTCAGTTTCTTGTGGCCATCCTTTCTGCACTACATGCTGGACAGGTTATATCAGCACAACCATTAATGATGGCCCGGGATGTTTGATGCTAAGATGTCCTGACCCATCTTGTCTTGCTGCTGTTGGTCATGATATGGTTGACAAATTAGCGTCTGAAGACGAAAAGGAGAAGTACAACAGATATTTTCTTAGGTCTTATATTGAAGACAACAGAAAGATGAAGTGGTGTCCTGCCCCGGGATGTGATTTTGCGATTGATTTTGTTGCAGGGTCTGGAAATTATGATGTTTCCTGCTTGTGCTCGTTTAGCTTTTGCTGGAATTGCACTGAGGAGGCTCACCGACCTGTGGATTGTAGCACAGTTTCAAAATGGATATTAAAGAACAGCGCTGAATCTGAAAATATGAATTGGATACTTGCCAATTCAAAGCCTTGTCCGAGATGTAAGAGGCCAATTGAAAAGAATCAGGGCTGTATGCACATGACATGTACACCGCCTTGTAAATATGAATTTTGTTGGCTATGTCTTGGTGCATGGATGGATCACGGGGAAAGAACTGGTGGTTTTTATGCTTGTAACCGTTATGAGGTGGCCAAGCAAGAAGGACAGTATGATGAGACAGAGAGGAGGAGAGAGATGGCCAAAAATTCGCTAGAGAGATACACACACTATTATGAACGCTGGGCAAGCAATCAAACGTCGAGGCAAAAGGCTATGGCTGATCTGCAGCAAGCGCAGATGCAGAATCTTGAGAAGCTTAGTGATAAACAGTGCACACCAGAGTCTCAGCTCAAATTCATTTTAGAAGCTTGGCTTCAGATCATCGAATGTAGGCGAGTCTTGAAATGGACTTATGCATATGGATACTACCTACCTGAGCATGAACATGCCAAACGACAATTTTTCGAGTATTTGCAAGGTGAAGCTGAGTCAGGTTTAGAGAGGCTCCATCAATGCGTAGAGAAAGACTTGGTTCAGTTTCTCATTGCGGAAGGTCCATCAAAAGATTTCAATGATTTCCGGACAAAACTAGCTGGTTTGACCAGCGTGACGAAAAACTACTTTGAGAATTTGGTGAAAGCTCTGGAGAACGGTCTTGCTGATGTAGACTCACATGCGGCTTGCAGCAGCAAATCAACAAGCTCTAAATCAACAGGTTGCAGTAGCAAAACAAGAGGTAAAGGCAAAGGAAGTTCCAGAACTGGTGGATCCAGCAGAAACCCAGATGACAACTTATAA

Protein Analysis

562

Amino Acids

63.98

Weight (kDa)

5.06

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_ARI1 PF21235 2 - 37 1.8e-06 E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR PF01485 134 - 196 1.9e-16 IBR domain, a half RING-finger domain
IBR PF01485 213 - 260 1.5e-07 IBR domain, a half RING-finger domain
IBR_1 PF22191 218 - 258 4e-15 IBR domain
IBR_2 PF22605 219 - 258 3.8e-12 IBR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1687
Acc16I TGCGCA 1 cut(s) 30
AccI GTMKAC 1 cut(s) 1557
AccIII TCCGGA 1 cut(s) 1470
AciI CCGC 4 cut(s) 66, 944, 1439, 1568
AclWI GGATC 3 cut(s) 999, 1653, 1666
AcoI YGGCCR 3 cut(s) 463, 1041, 1089
AcsI RAATTY 4 cut(s) 959, 1096, 1244, 1519
AcuI CTGAAG 4 cut(s) 30, 435, 624, 1250
AfaI GTAC 2 cut(s) 623, 940
AfeI AGCGCT 1 cut(s) 838
AfiI CCNNNNNNNGG 4 cut(s) 113, 686, 796, 1036
AflIII ACRYGT 2 cut(s) 407, 935
AgsI TTSAA 8 cut(s) 230, 266, 653, 816, 876, 908, 1294, 1462
AleI CACNNNNGTG 1 cut(s) 297
AluBI AGCT 8 cut(s) 759, 1207, 1240, 1259, 1376, 1484, 1532, 1593
AluI AGCT 8 cut(s) 759, 1207, 1240, 1259, 1376, 1484, 1532, 1593
Alw21I GWGCWC 2 cut(s) 752, 1226
Alw26I GTCTC 2 cut(s) 1061, 1239
Alw44I GTGCAC 1 cut(s) 1222
AlwI GGATC 3 cut(s) 999, 1653, 1666
AlwNI CAGNNNCTG 1 cut(s) 722
Ama87I CYCGRG 2 cut(s) 523, 685
Aor13HI TCCGGA 1 cut(s) 1470
Aor51HI AGCGCT 1 cut(s) 838
AoxI GGCC 5 cut(s) 463, 520, 899, 1041, 1089
ApaLI GTGCAC 1 cut(s) 1222
ApeKI GCWGC 4 cut(s) 566, 1177, 1575, 1578
ApoI RAATTY 4 cut(s) 959, 1096, 1244, 1519
AseI ATTAAT 1 cut(s) 513
Asp700I GAANNNNTTC 1 cut(s) 201
AspLEI GCGC 3 cut(s) 31, 839, 1186
AspS9I GGNCC 2 cut(s) 521, 1445
AsuC2I CCSGG 4 cut(s) 524, 525, 686, 687
AsuHPI GGTGA 4 cut(s) 113, 779, 1382, 1537
AvaI CYCGRG 2 cut(s) 523, 685
AvaII GGWCC 1 cut(s) 1445
BaeGI GKGCMC 1 cut(s) 1226
BalI TGGCCA 3 cut(s) 465, 1043, 1091
BamHI GGATCC 1 cut(s) 1658
BbsI GAAGAC 4 cut(s) 21, 356, 612, 660
Bbv12I GWGCWC 2 cut(s) 752, 1226
BbvI GCAGC 4 cut(s) 553, 1189, 1587, 1590
BciVI GTATCC 2 cut(s) 855, 1307
BcnI CCSGG 4 cut(s) 524, 525, 686, 687
BcoDI GTCTC 2 cut(s) 1061, 1239
BfaI CTAG 2 cut(s) 1103, 1481
BfmI CTRYAG 2 cut(s) 61, 1175
BfoI RGCGCY 1 cut(s) 840
BfuI GTATCC 2 cut(s) 855, 1307
BisI GCNGC 5 cut(s) 567, 1178, 1569, 1576, 1579
BlsI GCNGC 5 cut(s) 568, 1179, 1570, 1577, 1580
Bme1390I CCNGG 4 cut(s) 524, 525, 686, 687
Bme18I GGWCC 1 cut(s) 1445
BmeT110I CYCGRG 2 cut(s) 523, 685
BmgT120I GGNCC 2 cut(s) 521, 1445
BmiI GGNNCC 2 cut(s) 1397, 1660
BmrFI CCNGG 4 cut(s) 524, 525, 686, 687
BmsI GCATC 5 cut(s) 16, 121, 220, 525, 1179
BpiI GAAGAC 4 cut(s) 21, 356, 612, 660
BpmI CTGGAG 3 cut(s) 66, 316, 1556
Bpu10I CCTNAGC 1 cut(s) 1326
BpuEI CTTGAG 1 cut(s) 1220
BpuMI CCSGG 4 cut(s) 524, 525, 686, 687
BsaJI CCNNGG 3 cut(s) 523, 684, 685
BsaWI WCCGGW 1 cut(s) 1470
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 686, 796, 1036
Bse1I ACTGG 3 cut(s) 299, 1012, 1657
Bse3DI GCAATG 1 cut(s) 1434
BseAI TCCGGA 1 cut(s) 1470
BseDI CCNNGG 3 cut(s) 523, 684, 685
BseGI GGATG 5 cut(s) 58, 466, 533, 695, 993
BseLI CCNNNNNNNGG 4 cut(s) 113, 686, 796, 1036
BseMI GCAATG 1 cut(s) 1434
BseMII CTCAG 8 cut(s) 179, 182, 249, 429, 768, 1250, 1317, 1368
BseNI ACTGG 3 cut(s) 299, 1012, 1657
BseRI GAGGAG 3 cut(s) 794, 1090, 1093
BseSI GKGCMC 1 cut(s) 1226
BseXI GCAGC 4 cut(s) 553, 1189, 1587, 1590
BseYI CCCAGC 1 cut(s) 1131
BsgI GTGCAG 1 cut(s) 460
BshFI GGCC 5 cut(s) 465, 522, 901, 1043, 1091
BsiHKAI GWGCWC 2 cut(s) 752, 1226
BsiHKCI CYCGRG 2 cut(s) 523, 685
BsiSI CCGG 3 cut(s) 524, 686, 1471
BslI CCNNNNNNNGG 4 cut(s) 113, 686, 796, 1036
BsmAI GTCTC 2 cut(s) 1061, 1239
BsnI GGCC 5 cut(s) 465, 522, 901, 1043, 1091
BsoBI CYCGRG 2 cut(s) 523, 685
Bsp1286I GDGCHC 2 cut(s) 752, 1226
Bsp13I TCCGGA 1 cut(s) 1470
Bsp1407I TGTACA 1 cut(s) 938
Bsp143I GATC 5 cut(s) 150, 991, 1171, 1269, 1658
BspACI CCGC 4 cut(s) 66, 944, 1439, 1568
BspANI GGCC 5 cut(s) 465, 522, 901, 1043, 1091
BspCNI CTCAG 8 cut(s) 180, 181, 250, 430, 769, 1249, 1318, 1369
BspEI TCCGGA 1 cut(s) 1470
BspHI TCATGA 2 cut(s) 313, 577
BspLI GGNNCC 2 cut(s) 1397, 1660
BspMAI CTGCAG 1 cut(s) 1179
BspPI GGATC 3 cut(s) 999, 1653, 1666
BsrDI GCAATG 1 cut(s) 1434
BsrGI TGTACA 1 cut(s) 938
BsrI ACTGG 3 cut(s) 299, 1012, 1657
BssECI CCNNGG 3 cut(s) 523, 684, 685
BssMI GATC 5 cut(s) 150, 991, 1171, 1269, 1658
Bst4CI ACNGT 7 cut(s) 355, 398, 811, 1031, 1059, 1221, 1544
Bst6I CTCTTC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 483
BstAUI TGTACA 1 cut(s) 938
BstC8I GCNNGC 4 cut(s) 209, 1138, 1182, 1573
BstF5I GGATG 5 cut(s) 58, 466, 533, 695, 993
BstH2I RGCGCY 1 cut(s) 840
BstHHI GCGC 3 cut(s) 31, 839, 1186
BstKTI GATC 5 cut(s) 153, 994, 1174, 1272, 1661
BstMAI GTCTC 2 cut(s) 1061, 1239
BstMBI GATC 5 cut(s) 150, 991, 1171, 1269, 1658
BstMWI GCNNNNNNNGC 7 cut(s) 28, 152, 483, 756, 771, 1137, 1183
BstNSI RCATGY 6 cut(s) 22, 411, 486, 939, 1340, 1568
BstSCI CCNGG 4 cut(s) 522, 523, 684, 685
BstSFI CTRYAG 2 cut(s) 61, 1175
BstSLI GKGCMC 1 cut(s) 1226
BstV1I GCAGC 4 cut(s) 553, 1189, 1587, 1590
BstV2I GAAGAC 4 cut(s) 21, 356, 612, 660
BstX2I RGATCY 1 cut(s) 1658
BstYI RGATCY 1 cut(s) 1658
BsuI GTATCC 2 cut(s) 855, 1307
BsuRI GGCC 5 cut(s) 465, 522, 901, 1043, 1091
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 5 cut(s) 58, 466, 533, 695, 993
BtsIMutI CAGTG 4 cut(s) 292, 403, 774, 1226
Cac8I GCNNGC 4 cut(s) 209, 1138, 1182, 1573
CaiI CAGNNNCTG 1 cut(s) 722
CciI TCATGA 2 cut(s) 313, 577
CfoI GCGC 3 cut(s) 31, 839, 1186
Cfr13I GGNCC 2 cut(s) 521, 1445
Cfr9I CCCGGG 2 cut(s) 523, 685
CseI GACGC 1 cut(s) 588
Csp6I GTAC 2 cut(s) 622, 939
CviQI GTAC 2 cut(s) 622, 939
DpnI GATC 5 cut(s) 152, 993, 1173, 1271, 1660
DpnII GATC 5 cut(s) 150, 991, 1171, 1269, 1658
EaeI YGGCCR 3 cut(s) 463, 1041, 1089
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 1445
Eco47III AGCGCT 1 cut(s) 838
Eco57I CTGAAG 4 cut(s) 30, 435, 624, 1250
Eco88I CYCGRG 2 cut(s) 523, 685
EcoT22I ATGCAT 1 cut(s) 1309
FalI AAGNNNNNCTT 2 cut(s) 1248, 1280
FauNDI CATATG 1 cut(s) 1309
FblI GTMKAC 1 cut(s) 1557
Fnu4HI GCNGC 5 cut(s) 567, 1178, 1569, 1576, 1579
FokI GGATG 5 cut(s) 65, 453, 540, 702, 1000
Fsp4HI GCNGC 5 cut(s) 567, 1178, 1569, 1576, 1579
FspAI RTGCGCAY 1 cut(s) 30
FspBI CTAG 2 cut(s) 1103, 1481
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 3 cut(s) 30, 838, 1185
GluI GCNGC 5 cut(s) 567, 1178, 1569, 1576, 1579
GsaI CCCAGC 1 cut(s) 1135
GsuI CTGGAG 3 cut(s) 66, 316, 1556
HaeII RGCGCY 1 cut(s) 840
HaeIII GGCC 5 cut(s) 465, 522, 901, 1043, 1091
HapII CCGG 3 cut(s) 524, 686, 1471
HgaI GACGC 1 cut(s) 588
HhaI GCGC 3 cut(s) 31, 839, 1186
Hin6I GCGC 3 cut(s) 29, 837, 1184
HinP1I GCGC 3 cut(s) 29, 837, 1184
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 2 cut(s) 1205, 1257
HpaII CCGG 3 cut(s) 524, 686, 1471
HphI GGTGA 4 cut(s) 113, 779, 1382, 1537
Hpy166II GTNNAC 6 cut(s) 104, 401, 589, 941, 1224, 1558
Hpy8I GTNNAC 6 cut(s) 104, 401, 589, 941, 1224, 1558
Hpy99I CGWCG 1 cut(s) 1153
HpyAV CCTTC 2 cut(s) 1046, 1436
HpyCH4III ACNGT 7 cut(s) 355, 398, 811, 1031, 1059, 1221, 1544
HpyCH4IV ACGT 1 cut(s) 1148
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 152, 483, 756, 771, 1137, 1183
HpySE526I ACGT 1 cut(s) 1148
HspAI GCGC 3 cut(s) 29, 837, 1184
Kpn2I TCCGGA 1 cut(s) 1470
Kzo9I GATC 5 cut(s) 150, 991, 1171, 1269, 1658
LmnI GCTCC 1 cut(s) 1401
Lsp1109I GCAGC 4 cut(s) 553, 1189, 1587, 1590
LweI GCATC 5 cut(s) 16, 121, 220, 525, 1179
MaeI CTAG 2 cut(s) 1103, 1481
MaeII ACGT 1 cut(s) 1148
MaeIII GTNAC 3 cut(s) 284, 1025, 1498
MalI GATC 5 cut(s) 152, 993, 1173, 1271, 1660
MboI GATC 5 cut(s) 150, 991, 1171, 1269, 1658
MboII GAAGA 9 cut(s) 23, 26, 140, 206, 209, 347, 361, 617, 665
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 1 cut(s) 1658
MhlI GDGCHC 2 cut(s) 752, 1226
MlsI TGGCCA 3 cut(s) 465, 1043, 1091
MluNI TGGCCA 3 cut(s) 465, 1043, 1091
MlyI GAGTC 6 cut(s) 50, 379, 1241, 1296, 1388, 1553
Mox20I TGGCCA 3 cut(s) 465, 1043, 1091
Mph1103I ATGCAT 1 cut(s) 1309
MroI TCCGGA 1 cut(s) 1470
MroXI GAANNNNTTC 1 cut(s) 201
MscI TGGCCA 3 cut(s) 465, 1043, 1091
MseI TTAA 2 cut(s) 513, 827
MslI CAYNNNNRTG 3 cut(s) 297, 1122, 1335
Msp20I TGGCCA 3 cut(s) 465, 1043, 1091
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 3 cut(s) 524, 686, 1471
MspR9I CCNGG 4 cut(s) 524, 525, 686, 687
MunI CAATTG 1 cut(s) 903
MwoI GCNNNNNNNGC 7 cut(s) 28, 152, 483, 756, 771, 1137, 1183
NciI CCSGG 4 cut(s) 524, 525, 686, 687
NdeI CATATG 1 cut(s) 1309
NdeII GATC 5 cut(s) 150, 991, 1171, 1269, 1658
NlaIV GGNNCC 2 cut(s) 1397, 1660
NmuCI GTSAC 2 cut(s) 284, 1498
NsbI TGCGCA 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 1309
NspI RCATGY 6 cut(s) 22, 411, 486, 939, 1340, 1568
OliI CACNNNNGTG 1 cut(s) 297
PagI TCATGA 2 cut(s) 313, 577
PciI ACATGT 2 cut(s) 407, 935
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 7 cut(s) 5, 140, 414, 425, 842, 913, 1195
PkrI GCNGC 5 cut(s) 568, 1179, 1570, 1577, 1580
PleI GAGTC 6 cut(s) 49, 378, 1240, 1295, 1387, 1553
PpsI GAGTC 6 cut(s) 49, 378, 1240, 1295, 1387, 1553
PscI ACATGT 2 cut(s) 407, 935
PshBI ATTAAT 1 cut(s) 513
PsiI TTATAA 1 cut(s) 1687
PspFI CCCAGC 1 cut(s) 1131
PspN4I GGNNCC 2 cut(s) 1397, 1660
PspPI GGNCC 2 cut(s) 521, 1445
PstI CTGCAG 1 cut(s) 1179
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 1 cut(s) 1658
RsaI GTAC 2 cut(s) 623, 940
RsaNI GTAC 2 cut(s) 622, 939
RseI CAYNNNNRTG 3 cut(s) 297, 1122, 1335
SaqAI TTAA 2 cut(s) 513, 827
SatI GCNGC 5 cut(s) 567, 1178, 1569, 1576, 1579
Sau3AI GATC 5 cut(s) 150, 991, 1171, 1269, 1658
Sau96I GGNCC 2 cut(s) 521, 1445
SchI GAGTC 6 cut(s) 50, 379, 1241, 1296, 1388, 1553
ScrFI CCNGG 4 cut(s) 524, 525, 686, 687
SduI GDGCHC 2 cut(s) 752, 1226
SfaNI GCATC 5 cut(s) 16, 121, 220, 525, 1179
SfcI CTRYAG 2 cut(s) 61, 1175
SinI GGWCC 1 cut(s) 1445
SmaI CCCGGG 2 cut(s) 525, 687
SmiMI CAYNNNNRTG 3 cut(s) 297, 1122, 1335
SmlI CTYRAG 1 cut(s) 1199
SmoI CTYRAG 1 cut(s) 1199
SsiI CCGC 4 cut(s) 66, 944, 1439, 1568
SspI AATATT 1 cut(s) 226
SspMI CTAG 2 cut(s) 1103, 1481
StyD4I CCNGG 4 cut(s) 522, 523, 684, 685
TaaI ACNGT 7 cut(s) 355, 398, 811, 1031, 1059, 1221, 1544
TaiI ACGT 1 cut(s) 1151
TaqI TCGA 6 cut(s) 24, 251, 423, 1151, 1275, 1356
TatI WGTACW 2 cut(s) 621, 938
TauI GCSGC 1 cut(s) 1571
TfiI GAWTC 7 cut(s) 5, 140, 414, 425, 842, 913, 1195
Tru1I TTAA 2 cut(s) 513, 827
Tru9I TTAA 2 cut(s) 513, 827
TscAI CASTG 4 cut(s) 299, 403, 781, 1226
TseFI GTSAC 2 cut(s) 284, 1498
TseI GCWGC 4 cut(s) 566, 1177, 1575, 1578
Tsp45I GTSAC 2 cut(s) 284, 1498
TspDTI ATGAA 8 cut(s) 302, 348, 683, 869, 972, 1140, 1237, 1347
TspGWI ACGGA 1 cut(s) 229
TspMI CCCGGG 2 cut(s) 523, 685
TspRI CASTG 4 cut(s) 299, 403, 781, 1226
VneI GTGCAC 1 cut(s) 1222
VpaK11BI GGWCC 1 cut(s) 1445
VspI ATTAAT 1 cut(s) 513
XapI RAATTY 4 cut(s) 959, 1096, 1244, 1519
XceI RCATGY 6 cut(s) 22, 411, 486, 939, 1340, 1568
XmaI CCCGGG 2 cut(s) 523, 685
XmiI GTMKAC 1 cut(s) 1557
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 2 cut(s) 1103, 1481
Zsp2I ATGCAT 1 cut(s) 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.