Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005612

Physical Location & Seq

Genomic Coordinates Forward (+)

32860373 .. 32872303

Gene Structure 11931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG148900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGATTCCGACGCCATATTATCGTCCTCGGAAGATATGCACGACGCCAACGACGTTGAATCCGACGAGGAGGGCTTCTACAGCGACGAGAACGAAGTCGCCTCCGACTACAATACCGACGACGACGACGTCGATGATTACGTTATCGAGGAAGATGAAGACGGAATCAACATGATCCAGGCTCGTCGCCCTGAGAATAATTACATCGTCTTGAAGGAGTTAGATATAAAGGAACGCCAGGAAGATGATATTACAAGTGTATCTTCTGTGCTGTCCATATCAAGAGCTGCTTCAACCATTTTGCTTCGCTACTATAATTGGAATGTTAGTGAAGTGCATGAAGCATGGTTTGCAGATGAAGAGAAAGTCCGGAAAACTGTAGGCTTGTTACCTGGGACAGTTGTTCAGTTTGCGAAGCCAAGAGAACTGATGTGTGGGATCTGTTTTGAAGCCTTTCCACGTAGTAGGCTAAAATCAGCAGATTGTGGTCATCCTTTCTGTTTTGAATGTTGGGAAGGCTACATTAGAACATCCATCAACGATGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCATCTTGTGGTGCCGCTGTTGGTCAAGATATGATTAATATATTTGCCTGTGATGATGATAGGTGCAAGTACTCTAAGTACCTGCTTAGGTCTTTTGTTGAAGACAACAAGAAGACCAAGTGGTGTCCAGCTCCGGGTTGTGAGCATGCAGTTAATTATGTTGGAGATAATGAAAATTATGATGTTTCTTGCCTCTGTTCATACGACTTCTGCTGGAATTGTACGGAGGAAACCCATCGTCCTGTGGACTGTAACACTGTAAGGTTATGGATCTTGAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCCAATTCCAAGCCATGTCCAAAGTGCAAGCGACCGATTGAAAAAAACCAAGGGTGTATGCACATGACATGCTCACCAGCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAGAGGACCGGCGGTTTCTATGCTTGTAATCGCTATGAGGCAGCTAAGCAAGAAGGAGTTTATGATGAGGCTGAGAGAAGAAGAGAAATGGCAAAGAATTCTTTGGAGAGATACACTCATTATTATGAACGTTGGGCAAGCAATCAATCGTCAAGGCAGAAAGCTCTTGTTGATTTACATCAAATGCAAACTGTCAATGTAAGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

410

Amino Acids

47.03

Weight (kDa)

4.69

Isoelectric Point (pI)

60.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARI1	PF21235	79 - 117	5.8e-09	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR	PF01485	215 - 276	6e-15	IBR domain, a half RING-finger domain
IBR	PF01485	293 - 340	8.1e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	298 - 338	6.4e-15	IBR domain
IBR_2	PF22605	299 - 338	2.5e-13	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05890 AT1G05890 AT2G31510 AT2G31510 AT2G31510
fragaria_vesca	FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130
malus_domestica	MD04G1007200.v1.1 MD13G1275700.v1.1
prunus_persica	Prupe.1G191400_v2.0.a1
pyrus_communis	pycom04g03420 pycom13g28570
rosa_chinensis	RchiOBHm_Chr4g0407061
rosa_laevigata	RLG00000008740
rosa_multiflora	Rmu_sc0000600.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351790
rosa_rugosa	Rorug04G0077500 Rorug04G0077600 Rorug04G0077700
rosa_samantha	Rh4AG142400 Rh4BG140100 Rh4CG148900 Rh4DG136500
rosa_wichuraiana	Rw4G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	666
AccB1I	GGYRCC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	584
AccIII	TCCGGA	1 cut(s)	369
AciI	CCGC	2 cut(s)	591, 1035
AclI	AACGTT	1 cut(s)	1153
AclWI	GGATC	4 cut(s)	169, 446, 569, 854
AcsI	RAATTY	3 cut(s)	977, 983, 1120
AcyI	GRCGYC	3 cut(s)	12, 45, 129
AfaI	GTAC	4 cut(s)	647, 656, 799, 1228
AfiI	CCNNNNNNNGG	2 cut(s)	584, 710
AgsI	TTSAA	9 cut(s)	59, 214, 294, 449, 506, 677, 853, 932, 983
AjnI	CCWGG	4 cut(s)	177, 237, 391, 547
AluBI	AGCT	5 cut(s)	287, 707, 971, 1067, 1187
AluI	AGCT	5 cut(s)	287, 707, 971, 1067, 1187
AlwI	GGATC	4 cut(s)	169, 446, 569, 854
Aor13HI	TCCGGA	1 cut(s)	369
ApeKI	GCWGC	2 cut(s)	287, 1064
ApoI	RAATTY	3 cut(s)	977, 983, 1120
AseI	ATTAAT	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	2 cut(s)	545, 1029
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	2 cut(s)	957, 1034
AvaII	GGWCC	2 cut(s)	545, 1029
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BanI	GGYRCC	1 cut(s)	587
BbsI	GAAGAC	3 cut(s)	165, 684, 695
BbvI	GCAGC	2 cut(s)	274, 1076
BccI	CCATC	4 cut(s)	536, 542, 586, 819
BciT130I	CCWGG	4 cut(s)	179, 239, 393, 549
BcnI	CCSGG	1 cut(s)	711
BfmI	CTRYAG	2 cut(s)	79, 378
BfuAI	ACCTGC	1 cut(s)	666
BisI	GCNGC	3 cut(s)	288, 591, 1065
BlpI	GCTNAGC	1 cut(s)	1068
BlsI	GCNGC	3 cut(s)	289, 592, 1066
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	5 cut(s)	179, 239, 393, 549, 711
Bme18I	GGWCC	2 cut(s)	545, 1029
BmgT120I	GGNCC	2 cut(s)	545, 1029
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	5 cut(s)	179, 239, 393, 549, 711
BmsI	GCATC	1 cut(s)	549
BpiI	GAAGAC	3 cut(s)	165, 684, 695
BplI	GAGNNNNNCTC	2 cut(s)	1123, 1155
Bpu10I	CCTNAGC	1 cut(s)	662
Bpu1102I	GCTNAGC	1 cut(s)	1068
BpuMI	CCSGG	1 cut(s)	711
BsaAI	YACGTR	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	1200
BsaHI	GRCGYC	3 cut(s)	12, 45, 129
BsaJI	CCNNGG	5 cut(s)	27, 392, 940, 1000, 1018
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 710
Bse118I	RCCGGY	1 cut(s)	1031
Bse1I	ACTGG	1 cut(s)	887
Bse8I	GATNNNNATC	1 cut(s)	1200
BseAI	TCCGGA	1 cut(s)	369
BseBI	CCWGG	4 cut(s)	179, 239, 393, 549
BseDI	CCNNGG	5 cut(s)	27, 392, 940, 1000, 1018
BseGI	GGATG	3 cut(s)	490, 530, 557
BseJI	GATNNNNATC	1 cut(s)	1200
BseLI	CCNNNNNNNGG	2 cut(s)	584, 710
BseMII	CTCAG	4 cut(s)	183, 554, 855, 1086
BseNI	ACTGG	1 cut(s)	887
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	274, 1076
Bsh1285I	CGRYCG	1 cut(s)	926
BshNI	GGYRCC	1 cut(s)	587
BsiEI	CGRYCG	1 cut(s)	926
BsiSI	CCGG	3 cut(s)	370, 710, 1032
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	584, 710
BsmFI	GGGAC	1 cut(s)	409
Bsp13I	TCCGGA	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	174, 438, 574, 846
Bsp1720I	GCTNAGC	1 cut(s)	1068
Bsp19I	CCATGG	1 cut(s)	1018
BspACI	CCGC	2 cut(s)	591, 1035
BspCNI	CTCAG	4 cut(s)	184, 555, 856, 1087
BspEI	TCCGGA	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	589
BspMI	ACCTGC	1 cut(s)	666
BspPI	GGATC	4 cut(s)	169, 446, 569, 854
BspT107I	GGYRCC	1 cut(s)	587
BsrFI	RCCGGY	1 cut(s)	1031
BsrI	ACTGG	1 cut(s)	887
BssAI	RCCGGY	1 cut(s)	1031
BssECI	CCNNGG	5 cut(s)	27, 392, 940, 1000, 1018
BssMI	GATC	4 cut(s)	174, 438, 574, 846
BssNI	GRCGYC	3 cut(s)	12, 45, 129
BssT1I	CCWWGG	3 cut(s)	940, 1000, 1018
Bst2UI	CCWGG	4 cut(s)	179, 239, 393, 549
Bst4CI	ACNGT	6 cut(s)	379, 400, 827, 835, 860, 1216
Bst6I	CTCTTC	2 cut(s)	354, 1099
BstACI	GRCGYC	3 cut(s)	12, 45, 129
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	461
BstC8I	GCNNGC	4 cut(s)	723, 920, 992, 1162
BstDEI	CTNAG	7 cut(s)	192, 563, 651, 662, 864, 1068, 1095
BstDSI	CCRYGG	1 cut(s)	1018
BstF5I	GGATG	3 cut(s)	490, 530, 557
BstKTI	GATC	4 cut(s)	177, 441, 577, 849
BstMBI	GATC	4 cut(s)	174, 438, 574, 846
BstMCI	CGRYCG	1 cut(s)	926
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 350, 996
BstNI	CCWGG	4 cut(s)	179, 239, 393, 549
BstNSI	RCATGY	2 cut(s)	725, 963
BstSCI	CCNGG	5 cut(s)	177, 237, 391, 547, 709
BstSFI	CTRYAG	2 cut(s)	79, 378
BstV1I	GCAGC	2 cut(s)	274, 1076
BstV2I	GAAGAC	3 cut(s)	165, 684, 695
BstX2I	RGATCY	2 cut(s)	438, 846
BstYI	RGATCY	2 cut(s)	438, 846
BtgI	CCRYGG	1 cut(s)	1018
BtsCI	GGATG	3 cut(s)	490, 530, 557
BtsIMutI	CAGTG	2 cut(s)	831, 865
BveI	ACCTGC	1 cut(s)	666
Cac8I	GCNNGC	4 cut(s)	723, 920, 992, 1162
Cfr10I	RCCGGY	1 cut(s)	1031
Cfr13I	GGNCC	2 cut(s)	545, 1029
CseI	GACGC	2 cut(s)	20, 53
Csp6I	GTAC	4 cut(s)	646, 655, 798, 1227
CviQI	GTAC	4 cut(s)	646, 655, 798, 1227
DdeI	CTNAG	7 cut(s)	192, 563, 651, 662, 864, 1068, 1095
DpnI	GATC	4 cut(s)	176, 440, 576, 848
DpnII	GATC	4 cut(s)	174, 438, 574, 846
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	2 cut(s)	354, 1099
EarI	CTCTTC	2 cut(s)	354, 1099
Eco130I	CCWWGG	3 cut(s)	940, 1000, 1018
Eco47I	GGWCC	2 cut(s)	545, 1029
EcoRI	GAATTC	1 cut(s)	1120
EcoRII	CCWGG	4 cut(s)	177, 237, 391, 547
EcoT14I	CCWWGG	3 cut(s)	940, 1000, 1018
ErhI	CCWWGG	3 cut(s)	940, 1000, 1018
FalI	AAGNNNNNCTT	4 cut(s)	247, 279, 274, 306
FaqI	GGGAC	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	288, 591, 1065
FokI	GGATG	3 cut(s)	477, 517, 564
Fsp4HI	GCNGC	3 cut(s)	288, 591, 1065
GluI	GCNGC	3 cut(s)	288, 591, 1065
HapII	CCGG	3 cut(s)	370, 710, 1032
HgaI	GACGC	2 cut(s)	20, 53
Hin1I	GRCGYC	3 cut(s)	12, 45, 129
HinfI	GANTC	4 cut(s)	5, 59, 165, 866
HpaII	CCGG	3 cut(s)	370, 710, 1032
HphI	GGTGA	2 cut(s)	957, 1034
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	6 cut(s)	10, 31, 64, 106, 871, 1015
Hpy188III	TCNNGA	6 cut(s)	211, 282, 370, 572, 602, 850
Hpy8I	GTNNAC	1 cut(s)	823
HpyAV	CCTTC	3 cut(s)	208, 509, 1070
HpyCH4III	ACNGT	6 cut(s)	379, 400, 827, 835, 860, 1216
HpyCH4IV	ACGT	5 cut(s)	54, 129, 141, 460, 1153
HpyCH4V	TGCA	9 cut(s)	40, 337, 353, 642, 725, 918, 952, 1007, 1210
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 350, 996
HpyF3I	CTNAG	7 cut(s)	192, 563, 651, 662, 864, 1068, 1095
HpySE526I	ACGT	5 cut(s)	54, 129, 141, 460, 1153
Hsp92I	GRCGYC	3 cut(s)	12, 45, 129
Kpn2I	TCCGGA	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	174, 438, 574, 846
LmnI	GCTCC	1 cut(s)	712
Lsp1109I	GCAGC	2 cut(s)	274, 1076
LweI	GCATC	1 cut(s)	549
MaeII	ACGT	5 cut(s)	54, 129, 141, 460, 1153
MaeIII	GTNAC	2 cut(s)	387, 827
MalI	GATC	4 cut(s)	176, 440, 576, 848
MboI	GATC	4 cut(s)	174, 438, 574, 846
MflI	RGATCY	2 cut(s)	438, 846
MluCI	AATT	9 cut(s)	199, 316, 730, 751, 793, 895, 977, 983, 1120
MlyI	GAGTC	1 cut(s)	875
MmeI	TCCRAC	4 cut(s)	33, 87, 129, 718
MroI	TCCGGA	1 cut(s)	369
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	612, 729
MslI	CAYNNNNRTG	1 cut(s)	1146
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	3 cut(s)	370, 710, 1032
MspR9I	CCNGG	5 cut(s)	179, 239, 393, 549, 711
MvaI	CCWGG	4 cut(s)	179, 239, 393, 549
MwoI	GCNNNNNNNGC	3 cut(s)	81, 350, 996
NciI	CCSGG	1 cut(s)	711
NcoI	CCATGG	1 cut(s)	1018
NdeII	GATC	4 cut(s)	174, 438, 574, 846
NlaIV	GGNNCC	1 cut(s)	589
NspI	RCATGY	2 cut(s)	725, 963
PaeI	GCATGC	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	6 cut(s)	48, 51, 60, 126, 129, 138
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	5, 59, 165
PflFI	GACNNNGTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	584
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	3 cut(s)	289, 592, 1066
PleI	GAGTC	1 cut(s)	874
PpsI	GAGTC	1 cut(s)	874
Ppu21I	YACGTR	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	612
Psp1406I	AACGTT	1 cut(s)	1153
Psp6I	CCWGG	4 cut(s)	177, 237, 391, 547
PspGI	CCWGG	4 cut(s)	177, 237, 391, 547
PspN4I	GGNNCC	1 cut(s)	589
PspPI	GGNCC	2 cut(s)	545, 1029
PsuI	RGATCY	2 cut(s)	438, 846
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	4 cut(s)	647, 656, 799, 1228
RsaNI	GTAC	4 cut(s)	646, 655, 798, 1227
RseI	CAYNNNNRTG	1 cut(s)	1146
SaqAI	TTAA	2 cut(s)	612, 729
SatI	GCNGC	3 cut(s)	288, 591, 1065
Sau3AI	GATC	4 cut(s)	174, 438, 574, 846
Sau96I	GGNCC	2 cut(s)	545, 1029
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	5 cut(s)	179, 239, 393, 549, 711
SfaNI	GCATC	1 cut(s)	549
SfcI	CTRYAG	2 cut(s)	79, 378
SinI	GGWCC	2 cut(s)	545, 1029
SmiMI	CAYNNNNRTG	1 cut(s)	1146
SphI	GCATGC	1 cut(s)	725
Sse9I	AATT	9 cut(s)	199, 316, 730, 751, 793, 895, 977, 983, 1120
SsiI	CCGC	2 cut(s)	591, 1035
StyD4I	CCNGG	5 cut(s)	177, 237, 391, 547, 709
StyI	CCWWGG	3 cut(s)	940, 1000, 1018
TaaI	ACNGT	6 cut(s)	379, 400, 827, 835, 860, 1216
TaiI	ACGT	5 cut(s)	57, 132, 144, 463, 1156
TaqI	TCGA	2 cut(s)	132, 147
TaqII	GACCGA	1 cut(s)	940
TasI	AATT	9 cut(s)	199, 316, 730, 751, 793, 895, 977, 983, 1120
TatI	WGTACW	2 cut(s)	645, 1226
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	3 cut(s)	5, 59, 165
Tru1I	TTAA	2 cut(s)	612, 729
Tru9I	TTAA	2 cut(s)	612, 729
TscAI	CASTG	2 cut(s)	838, 865
TseI	GCWGC	2 cut(s)	287, 1064
TspDTI	ATGAA	7 cut(s)	171, 354, 372, 762, 765, 893, 1164
TspGWI	ACGGA	2 cut(s)	177, 815
TspRI	CASTG	2 cut(s)	838, 865
Tth111I	GACNNNGTC	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	584
VpaK11BI	GGWCC	2 cut(s)	545, 1029
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	3 cut(s)	977, 983, 1120
XceI	RCATGY	2 cut(s)	725, 963
XmnI	GAANNNNTTC	1 cut(s)	453
ZraI	GACGTC	1 cut(s)	130
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.