Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005612

Physical Location & Seq

Genomic Coordinates Reverse (-)

11982606 .. 11983190

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0077700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCAAGCAATCAAGAGTTTAAGCATTCAATCGTTTTCCTTTTCACAGGTTGATGAAAATGCTGAAAACCCAGCATGGAAAGCCATTGGATATCAAGTAGAACAAGCTGAGAACCCGAAAAGAGTCCCAGAAGAGAGGCCTCTTCACAAGGGAATCATAGAAACCATGTACCAAACTGACACTAGCCTTCCGGATTCTCTTGCTGACAAAGGCCTCAAAGTGACACATGACTCCAAAAACGACCTCTACAAGATCAAATGTGATGTGGTAATTGTTGGCTCTGGCTGTGGCGGAGGTGTTGCAGCAGCTGTTTTAGCAAGTTCAGGCCAGAAAGTGATTGTTCTTGAGAAAGGGAACTACTTCACTGCGTCAGATTACTCATCTCTGGAAGGCCCATCCCAGGATCAACTGTATGAATCAGGAGGCAATCTTGCAACTGTTGATGGGAAAGTAATGATTCTGGCTGGATCAACAGTTGGTGGTGGCTCTGCAGTTAACTGGTCAGCCTGCATTAGAACACCAGATTCTCTGCTTCAGGAATGGGCCAAGGATCACAAGATTGCCTTCTTTGGGGGATCCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

194

Amino Acids

20.66

Weight (kDa)

4.99

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	88 - 122	2.4e-06	FAD binding domain
GMC_oxred_N	PF00732	135 - 191	6.4e-19	GMC oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05890 AT1G05890 AT2G31510 AT2G31510 AT2G31510
fragaria_vesca	FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130
malus_domestica	MD04G1007200.v1.1 MD13G1275700.v1.1
prunus_persica	Prupe.1G191400_v2.0.a1
pyrus_communis	pycom04g03420 pycom13g28570
rosa_chinensis	RchiOBHm_Chr4g0407061
rosa_laevigata	RLG00000008740
rosa_multiflora	Rmu_sc0000600.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351790
rosa_rugosa	Rorug04G0077500 Rorug04G0077600 Rorug04G0077700
rosa_samantha	Rh4AG142400 Rh4BG140100 Rh4CG148900 Rh4DG136500
rosa_wichuraiana	Rw4G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	5 cut(s)	411, 475, 558, 570, 583
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	400, 570
AgsI	TTSAA	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	2 cut(s)	107, 308
AluI	AGCT	2 cut(s)	107, 308
AlwI	GGATC	5 cut(s)	411, 475, 558, 570, 583
AlwNI	CAGNNNCTG	1 cut(s)	308
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	5 cut(s)	137, 211, 325, 391, 543
ApeKI	GCWGC	2 cut(s)	302, 305
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	392, 543
BamHI	GGATCC	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	314, 317
BccI	CCATC	2 cut(s)	403, 437
BciT130I	CCWGG	1 cut(s)	401
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
Bme1390I	CCNGG	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	392, 543
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	399, 546
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 570
Bse1I	ACTGG	1 cut(s)	503
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	399, 546
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	400, 570
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	314, 317
BseYI	CCCAGC	1 cut(s)	70
BshFI	GGCC	5 cut(s)	139, 213, 327, 393, 545
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	400, 570
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	5 cut(s)	139, 213, 327, 393, 545
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	5 cut(s)	252, 403, 467, 550, 575
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	5 cut(s)	139, 213, 327, 393, 545
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	577
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	5 cut(s)	411, 475, 558, 570, 583
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	2 cut(s)	399, 546
BssMI	GATC	5 cut(s)	252, 403, 467, 550, 575
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	3 cut(s)	411, 439, 475
Bst6I	CTCTTC	2 cut(s)	126, 147
BstC8I	GCNNGC	2 cut(s)	6, 508
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	395
BstKTI	GATC	5 cut(s)	255, 406, 470, 553, 578
BstMBI	GATC	5 cut(s)	252, 403, 467, 550, 575
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 314
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	314, 317
BstX2I	RGATCY	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	575
BsuRI	GGCC	5 cut(s)	139, 213, 327, 393, 545
BtsCI	GGATG	1 cut(s)	395
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	6, 508
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	392, 543
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	75, 166, 227
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	5 cut(s)	254, 405, 469, 552, 577
DpnII	GATC	5 cut(s)	252, 403, 467, 550, 575
Eam1104I	CTCTTC	2 cut(s)	126, 147
EarI	CTCTTC	2 cut(s)	126, 147
EciI	GGCGGA	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	2 cut(s)	139, 213
Eco32I	GATATC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	399
EcoRV	GATATC	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	3 cut(s)	78, 169, 230
FaiI	YATR	5 cut(s)	76, 158, 167, 228, 414
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	3 cut(s)	74, 165, 226
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	303, 306
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	2 cut(s)	303, 306
GsaI	CCCAGC	1 cut(s)	74
HaeIII	GGCC	5 cut(s)	139, 213, 327, 393, 545
HapII	CCGG	1 cut(s)	191
HgaI	GACGC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	78, 169, 230
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	7 cut(s)	123, 153, 194, 230, 416, 457, 524
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	2 cut(s)	373, 580
Hpy188III	TCNNGA	6 cut(s)	13, 191, 344, 386, 420, 536
Hpy8I	GTNNAC	1 cut(s)	496
HpyAV	CCTTC	3 cut(s)	197, 383, 574
HpyCH4III	ACNGT	3 cut(s)	411, 439, 475
HpyCH4V	TGCA	5 cut(s)	4, 302, 434, 491, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 314
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	78, 169, 230
Kpn2I	TCCGGA	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	252, 403, 467, 550, 575
Lsp1109I	GCAGC	2 cut(s)	314, 317
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	5 cut(s)	254, 405, 469, 552, 577
MboI	GATC	5 cut(s)	252, 403, 467, 550, 575
MboII	GAAGA	2 cut(s)	134, 143
MflI	RGATCY	1 cut(s)	575
MluCI	AATT	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	132, 224
MnlI	CCTC	6 cut(s)	129, 150, 224, 254, 287, 416
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	2 cut(s)	20, 495
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	80, 314
NdeII	GATC	5 cut(s)	252, 403, 467, 550, 575
NlaIII	CATG	3 cut(s)	78, 169, 230
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	220
PceI	AGGCCT	2 cut(s)	139, 213
PctI	GAATGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	5 cut(s)	153, 194, 416, 457, 524
PkrI	GCNGC	2 cut(s)	304, 307
PleI	GAGTC	2 cut(s)	131, 224
PpsI	GAGTC	2 cut(s)	131, 224
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	2 cut(s)	392, 543
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	575
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	20, 495
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	5 cut(s)	252, 403, 467, 550, 575
Sau96I	GGNCC	2 cut(s)	392, 543
SchI	GAGTC	2 cut(s)	132, 224
ScrFI	CCNGG	1 cut(s)	401
SetI	ASST	5 cut(s)	51, 109, 246, 298, 310
SfcI	CTRYAG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	270
SseBI	AGGCCT	2 cut(s)	139, 213
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	183
StuI	AGGCCT	2 cut(s)	139, 213
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	3 cut(s)	411, 439, 475
TasI	AATT	1 cut(s)	270
TfiI	GAWTC	5 cut(s)	153, 194, 416, 457, 524
Tru1I	TTAA	2 cut(s)	20, 495
Tru9I	TTAA	2 cut(s)	20, 495
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	302, 305
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	69, 429
TspRI	CASTG	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.