Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005612

Physical Location & Seq

Genomic Coordinates Forward (+)

11977436 .. 11980701

Gene Structure 3266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0077500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGTCTGCTGGCACATTGGGGAGTAAGACTGCTGCACTGGGAAGAAAGCAAGGTACTGATGGGCAGGAACTGACTGCTAATGTAAACGATGTTGCTTGTGTGATGAAAGAGGTCTTTTCTGGCACACGTTTATCAAAAGCTAAAATTTCTGAGTCTTTTGGGAGAGAAGGTCGGGTTTCCCCCCGCGTACCTGTATCCCCAGTAAGACTCCGGTGGACGTGGCCAAAAACCAAGAGGTTTCTGAACCTGAGACGGGTGATCTTTCGAATGCGTCCAAGGTTGGCGATGGTGGTTGTTCCAGAAAACATTGATTTCTCTGCATCCTCCTTGGCAAGGAAAAAAAGGCCTGTAGGCAGTCTCAAGTTACAGGAGTCAGAACATGAAGCTAAAGCTAGTGATGCTTTTCAGGTCTCTAGGACACTGCCTGAAATTGTGTCTGGAAACATTGATCAGCCTCTGGTTTCTTTGACTCTGGGAGGTGATAGTGTTGTAGGCTTATCTGAGGCACAACCTATAGACAGCTCCAAGCCGCCAGAGGAGTTGGAATGCTCTGAAGCAGGTCCTGTAGGTAGCTCTAAACCTCTAGAGGAGGTGGAATGTGAGGTTAAAGTTGGTAATACTTCTCAAGTTAATGGGTCATTTCTGGCAAATGTGTCTGAAAACCTTGATTTCCGTCCCTCTTCTGAAGCTAAAGTTGGTAATACTTCTCAAGTTTATGAGTCATTGCCGGCAAATGCGTCTGAAAACCTGGATTTACAGCTCTCTTCTGAAGCTAAAGCTGGTGATGTCTCTGACATTTGTGAGACATTGACAGAAGTTGTACCTGAAAACATGGATTTGCAGCCATGTTCAACAGGGCAGAAGTCGGAATCAGAAGCTATATTTGGTGTTGCTTCTCAGGTGCATGAGACTGTGTCAAAAATTGTATCTGAAAACATGGAGTTGCAGCCATCTTCAACAGTGCAGGAGTTGGAATCTGAAGAAGTTGATGCGTCTCAGGTTTGTGAGACAGTGTTGGAATTTGTACCTGAGAACATGGATTTGCAGCCATCTTCAACAGTGCAGGAGTCGGAATCTGAAACTAGAGGTGGTGAGGCTTCTCAGGTTAGCAAAACATTGCCGGAGTCTGAAAACATGGATTTGCAGACATTGGCAACAGCATATGACTCAGTATCTGCAGCTAAAGCTGGTGAGGTGTCTCAGTTTAGTGAAGCATTGCTAAAGTCTGGAAATATGGATTTGCAAACATCTTCAACAGCACAGGAATCAGAATCTGAAGCTAAAGTAGGTGATGCTTCTGGGGTTTGTGAGACATTGCTGGAGTCCAAAATCATGGATTTGCAACCATCTTCAACAGTTCAGGATACACAATCTTTAACTAAAGTTGGTGATGATTCTCAGGATTCTGAGACATTGCCAAAGTCTGAAAACATGGATTTGCAGCCATCTTCAACTGTACAGGAATCTGAAGCTGAAGCTAACATTTCTGAGTCTTTTGGGAGAGAAGGTTTCGAAACTGAGATGGATGATATTTTGAATGCGTCAAAGGTATCGAACCAGCAGGCATCAGCAAGTTATCTAAAAGCAGTGAAGAGATCACATTTCATCAGTTCTGATAAGGTAATTGAACTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

545

Amino Acids

58.56

Weight (kDa)

4.5

Isoelectric Point (pI)

60.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05890 AT1G05890 AT2G31510 AT2G31510 AT2G31510
fragaria_vesca	FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130
malus_domestica	MD04G1007200.v1.1 MD13G1275700.v1.1
prunus_persica	Prupe.1G191400_v2.0.a1
pyrus_communis	pycom04g03420 pycom13g28570
rosa_chinensis	RchiOBHm_Chr4g0407061
rosa_laevigata	RLG00000008740
rosa_multiflora	Rmu_sc0000600.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351790
rosa_rugosa	Rorug04G0077500 Rorug04G0077600 Rorug04G0077700
rosa_samantha	Rh4AG142400 Rh4BG140100 Rh4CG148900 Rh4DG136500
rosa_wichuraiana	Rw4G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1636
Acc36I	ACCTGC	1 cut(s)	548
AccII	CGCG	1 cut(s)	186
AciI	CCGC	2 cut(s)	184, 530
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	144, 1019
AcuI	CTGAAG	7 cut(s)	573, 705, 789, 999, 1296, 1488, 1494
AfaI	GTAC	5 cut(s)	55, 189, 822, 1026, 1458
AfiI	CCNNNNNNNGG	2 cut(s)	253, 333
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	8 cut(s)	852, 957, 1056, 1254, 1353, 1452, 1537, 1628
AjiI	CACGTC	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	747
AjuI	GAANNNNNNNTTGG	4 cut(s)	678, 710, 867, 899
AlwNI	CAGNNNCTG	5 cut(s)	70, 457, 563, 1175, 1274
AoxI	GGCC	2 cut(s)	221, 344
ApeKI	GCWGC	6 cut(s)	32, 841, 946, 1045, 1178, 1441
ApoI	RAATTY	2 cut(s)	144, 1019
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	7 cut(s)	268, 491, 794, 1103, 1202, 1301, 1400
AsuII	TTCGAA	2 cut(s)	265, 1512
AvaII	GGWCC	1 cut(s)	560
BalI	TGGCCA	1 cut(s)	223
BbvI	GCAGC	6 cut(s)	19, 853, 958, 1057, 1190, 1453
BccI	CCATC	7 cut(s)	53, 280, 958, 1057, 1354, 1453, 1516
BciT130I	CCWGG	1 cut(s)	749
BciVI	GTATCC	2 cut(s)	205, 1357
BclI	TGATCA	1 cut(s)	448
BfaI	CTAG	4 cut(s)	393, 414, 584, 1083
BfmI	CTRYAG	4 cut(s)	348, 513, 564, 1176
BfuAI	ACCTGC	1 cut(s)	548
BfuI	GTATCC	2 cut(s)	205, 1357
BisI	GCNGC	7 cut(s)	33, 530, 842, 947, 1046, 1179, 1442
BlsI	GCNGC	7 cut(s)	34, 531, 843, 948, 1047, 1180, 1443
Bme1390I	CCNGG	1 cut(s)	749
Bme18I	GGWCC	1 cut(s)	560
BmgBI	CACGTC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	560
BmrFI	CCNGG	1 cut(s)	749
BmrI	ACTGGG	2 cut(s)	47, 194
BmsI	GCATC	5 cut(s)	329, 388, 979, 1282, 1574
BmuI	ACTGGG	2 cut(s)	47, 194
BpmI	CTGGAG	1 cut(s)	1340
Bpu14I	TTCGAA	2 cut(s)	265, 1512
BpuEI	CTTGAG	3 cut(s)	344, 609, 693
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	275, 327
BsaWI	WCCGGW	1 cut(s)	210
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 1492, 1522
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 333
Bse118I	RCCGGY	1 cut(s)	727
Bse1I	ACTGG	2 cut(s)	42, 200
Bse3DI	GCAATG	5 cut(s)	722, 1115, 1214, 1313, 1412
BseBI	CCWGG	1 cut(s)	749
BseDI	CCNNGG	2 cut(s)	275, 327
BseGI	GGATG	2 cut(s)	320, 1531
BseLI	CCNNNNNNNGG	2 cut(s)	253, 333
BseMI	GCAATG	5 cut(s)	722, 1115, 1214, 1313, 1412
BseNI	ACTGG	2 cut(s)	42, 200
BseRI	GAGGAG	2 cut(s)	551, 602
BseXI	GCAGC	6 cut(s)	19, 853, 958, 1057, 1190, 1453
BsgI	GTGCAG	3 cut(s)	18, 983, 1082
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	223, 346
BsiSI	CCGG	3 cut(s)	211, 728, 1121
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	2 cut(s)	253, 333
BsmBI	CGTCTC	2 cut(s)	244, 999
BsmFI	GGGAC	1 cut(s)	660
BsmI	GAATGC	3 cut(s)	273, 551, 1543
BsnI	GGCC	2 cut(s)	223, 346
Bso31I	GGTCTC	1 cut(s)	415
Bsp119I	TTCGAA	2 cut(s)	265, 1512
Bsp1407I	TGTACA	1 cut(s)	1456
Bsp143I	GATC	3 cut(s)	258, 448, 1595
BspACI	CCGC	2 cut(s)	184, 530
BspANI	GGCC	2 cut(s)	223, 346
BspFNI	CGCG	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	1180
BspMI	ACCTGC	1 cut(s)	548
BspT104I	TTCGAA	2 cut(s)	265, 1512
BspTNI	GGTCTC	1 cut(s)	415
BsrDI	GCAATG	5 cut(s)	722, 1115, 1214, 1313, 1412
BsrFI	RCCGGY	1 cut(s)	727
BsrGI	TGTACA	1 cut(s)	1456
BsrI	ACTGG	2 cut(s)	42, 200
BssAI	RCCGGY	1 cut(s)	727
BssECI	CCNNGG	2 cut(s)	275, 327
BssMI	GATC	3 cut(s)	258, 448, 1595
BssT1I	CCWWGG	2 cut(s)	275, 327
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	7 cut(s)	913, 961, 1012, 1060, 1357, 1456, 1632
Bst6I	CTCTTC	3 cut(s)	685, 769, 1586
BstAUI	TGTACA	1 cut(s)	1456
BstBI	TTCGAA	2 cut(s)	265, 1512
BstC8I	GCNNGC	3 cut(s)	10, 729, 1563
BstENI	CCTNNNNNAGG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	320, 1531
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	3 cut(s)	261, 451, 1598
BstMBI	GATC	3 cut(s)	258, 448, 1595
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 1184
BstNI	CCWGG	1 cut(s)	749
BstSCI	CCNGG	1 cut(s)	747
BstSFI	CTRYAG	4 cut(s)	348, 513, 564, 1176
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	6 cut(s)	19, 853, 958, 1057, 1190, 1453
BstXI	CCANNNNNNTGG	1 cut(s)	1333
BsuI	GTATCC	2 cut(s)	205, 1357
BsuRI	GGCC	2 cut(s)	223, 346
BtgZI	GCGATG	1 cut(s)	299
BtrI	CACGTC	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	320, 1531
BtsI	GCAGTG	2 cut(s)	419, 1593
BtsIMutI	CAGTG	6 cut(s)	35, 419, 966, 1017, 1065, 1593
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	3 cut(s)	10, 729, 1563
CaiI	CAGNNNCTG	5 cut(s)	70, 457, 563, 1175, 1274
Cfr10I	RCCGGY	1 cut(s)	727
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	4 cut(s)	260, 726, 981, 1530
Csp6I	GTAC	5 cut(s)	54, 188, 821, 1025, 1457
CviAII	CATG	9 cut(s)	380, 832, 846, 905, 937, 1036, 1135, 1333, 1432
CviQI	GTAC	5 cut(s)	54, 188, 821, 1025, 1457
DpnI	GATC	3 cut(s)	260, 450, 1597
DpnII	GATC	3 cut(s)	258, 448, 1595
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	3 cut(s)	685, 769, 1586
EarI	CTCTTC	3 cut(s)	685, 769, 1586
Eco130I	CCWWGG	2 cut(s)	275, 327
Eco147I	AGGCCT	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	7 cut(s)	573, 705, 789, 999, 1296, 1488, 1494
EcoNI	CCTNNNNNAGG	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	747
EcoT14I	CCWWGG	2 cut(s)	275, 327
ErhI	CCWWGG	2 cut(s)	275, 327
Esp3I	CGTCTC	2 cut(s)	244, 999
FaeI	CATG	9 cut(s)	383, 835, 849, 908, 940, 1039, 1138, 1336, 1435
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	9 cut(s)	379, 831, 845, 904, 936, 1035, 1134, 1332, 1431
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	1162
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	7 cut(s)	33, 530, 842, 947, 1046, 1179, 1442
FokI	GGATG	2 cut(s)	307, 1538
Fsp4HI	GCNGC	7 cut(s)	33, 530, 842, 947, 1046, 1179, 1442
FspBI	CTAG	4 cut(s)	393, 414, 584, 1083
GluI	GCNGC	7 cut(s)	33, 530, 842, 947, 1046, 1179, 1442
GsuI	CTGGAG	1 cut(s)	1340
HaeIII	GGCC	2 cut(s)	223, 346
HapII	CCGG	3 cut(s)	211, 728, 1121
HgaI	GACGC	4 cut(s)	260, 726, 981, 1530
Hin1II	CATG	9 cut(s)	383, 835, 849, 908, 940, 1039, 1138, 1336, 1435
HpaII	CCGG	3 cut(s)	211, 728, 1121
HphI	GGTGA	7 cut(s)	268, 491, 794, 1103, 1202, 1301, 1400
Hpy166II	GTNNAC	2 cut(s)	85, 216
Hpy188III	TCNNGA	6 cut(s)	299, 438, 584, 1227, 1361, 1400
Hpy8I	GTNNAC	2 cut(s)	85, 216
HpyAV	CCTTC	2 cut(s)	161, 1499
HpyCH4III	ACNGT	7 cut(s)	913, 961, 1012, 1060, 1357, 1456, 1632
HpyCH4IV	ACGT	2 cut(s)	127, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 1184
HpySE526I	ACGT	2 cut(s)	127, 218
Hsp92II	CATG	9 cut(s)	383, 835, 849, 908, 940, 1039, 1138, 1336, 1435
KroI	GCCGGC	1 cut(s)	727
KroNI	GCCGGC	1 cut(s)	729
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	258, 448, 1595
LmnI	GCTCC	1 cut(s)	527
Lsp1109I	GCAGC	6 cut(s)	19, 853, 958, 1057, 1190, 1453
LweI	GCATC	5 cut(s)	329, 388, 979, 1282, 1574
MaeI	CTAG	4 cut(s)	393, 414, 584, 1083
MaeII	ACGT	2 cut(s)	127, 218
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	3 cut(s)	260, 450, 1597
MboI	GATC	3 cut(s)	258, 448, 1595
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	5 cut(s)	144, 429, 921, 1019, 1623
MluNI	TGGCCA	1 cut(s)	223
MmeI	TCCRAC	5 cut(s)	522, 846, 951, 996, 1050
Mox20I	TGGCCA	1 cut(s)	223
MroNI	GCCGGC	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	3 cut(s)	606, 630, 1376
Msp20I	TGGCCA	1 cut(s)	223
MspI	CCGG	3 cut(s)	211, 728, 1121
MspR9I	CCNGG	1 cut(s)	749
Mva1269I	GAATGC	3 cut(s)	273, 551, 1543
MvaI	CCWGG	1 cut(s)	749
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	398, 1184
NaeI	GCCGGC	1 cut(s)	729
NdeI	CATATG	1 cut(s)	1162
NdeII	GATC	3 cut(s)	258, 448, 1595
NgoMIV	GCCGGC	1 cut(s)	727
NlaIII	CATG	9 cut(s)	383, 835, 849, 908, 940, 1039, 1138, 1336, 1435
NspV	TTCGAA	2 cut(s)	265, 1512
PceI	AGGCCT	1 cut(s)	346
PctI	GAATGC	3 cut(s)	273, 551, 1543
PdiI	GCCGGC	1 cut(s)	729
PfeI	GAWTC	8 cut(s)	869, 974, 1073, 1265, 1271, 1394, 1403, 1463
PflFI	GACNNNGTC	1 cut(s)	913
PkrI	GCNGC	7 cut(s)	34, 531, 843, 948, 1047, 1180, 1443
PpuMI	RGGWCCY	1 cut(s)	560
PsiI	TTATAA	1 cut(s)	1636
Psp5II	RGGWCCY	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	747
PspGI	CCWGG	1 cut(s)	747
PspPI	GGNCC	1 cut(s)	560
PspPPI	RGGWCCY	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	1180
PstNI	CAGNNNCTG	5 cut(s)	70, 457, 563, 1175, 1274
PsyI	GACNNNGTC	1 cut(s)	913
RsaI	GTAC	5 cut(s)	55, 189, 822, 1026, 1458
RsaNI	GTAC	5 cut(s)	54, 188, 821, 1025, 1457
SaqAI	TTAA	3 cut(s)	606, 630, 1376
SatI	GCNGC	7 cut(s)	33, 530, 842, 947, 1046, 1179, 1442
Sau3AI	GATC	3 cut(s)	258, 448, 1595
Sau96I	GGNCC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	749
SfaNI	GCATC	5 cut(s)	329, 388, 979, 1282, 1574
SfcI	CTRYAG	4 cut(s)	348, 513, 564, 1176
SfuI	TTCGAA	2 cut(s)	265, 1512
SinI	GGWCC	1 cut(s)	560
SmlI	CTYRAG	3 cut(s)	359, 624, 708
SmoI	CTYRAG	3 cut(s)	359, 624, 708
Sse9I	AATT	5 cut(s)	144, 429, 921, 1019, 1623
SseBI	AGGCCT	1 cut(s)	346
SsiI	CCGC	2 cut(s)	184, 530
SspMI	CTAG	4 cut(s)	393, 414, 584, 1083
StuI	AGGCCT	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	747
StyI	CCWWGG	2 cut(s)	275, 327
TaaI	ACNGT	7 cut(s)	913, 961, 1012, 1060, 1357, 1456, 1632
TaiI	ACGT	2 cut(s)	130, 221
TaqI	TCGA	3 cut(s)	265, 1512, 1553
TasI	AATT	5 cut(s)	144, 429, 921, 1019, 1623
TatI	WGTACW	1 cut(s)	1456
TauI	GCSGC	1 cut(s)	532
TfiI	GAWTC	8 cut(s)	869, 974, 1073, 1265, 1271, 1394, 1403, 1463
Tru1I	TTAA	3 cut(s)	606, 630, 1376
Tru9I	TTAA	3 cut(s)	606, 630, 1376
TscAI	CASTG	6 cut(s)	42, 426, 966, 1017, 1065, 1593
TseI	GCWGC	6 cut(s)	32, 841, 946, 1045, 1178, 1441
TspDTI	ATGAA	3 cut(s)	119, 396, 1594
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	6 cut(s)	42, 426, 966, 1017, 1065, 1593
Tth111I	GACNNNGTC	1 cut(s)	913
VpaK11BI	GGWCC	1 cut(s)	560
XagI	CCTNNNNNAGG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	144, 1019
XbaI	TCTAGA	1 cut(s)	583
XspI	CTAG	4 cut(s)	393, 414, 584, 1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.