Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005612

Physical Location & Seq

Genomic Coordinates Reverse (-)

11981394 .. 11982305

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGGAAGAAGAAATGCTTGGGAGTAATGGCAAAAAGTTTAAGTAACAACATAACAAAGAGACTGCAAATTGAGGCAAAAGTCACAATTTCAGCATGTGGAGCTCTTTTGACACCTCCCTTAATGATCTCTAGTGGACTAAAGAACCGGCACATTGGTCGAAATCTTCATCTCCACCCTGTCCTAATGGCCTGGGGATACTTCCCTGACTCGATTAATTCAGAATTCAAGGGTAAAAGCTATGAGGGCGGAATAATCACATCGGTCCATGAGGTCATCTCAGCAGACTCTAGGCCAAGAGCCATCATTGAAACTCCTGCATTAGGGCCTGGAACATTTGCTGGTTTGTGTCCCTGGGAGTCTGGACTAGACATGAAGAAAAGGATGCTGAGATTTTCAAGAACTGCACATTTGATCACAATAATCCGGGATAAGGGTTCCGGGGTTATTAGGACAGAGGGAAGAGCAAGTTATGTGCTTGATGCATCAGACAAAGAGAACATGAAGGCTGGTTTGAGGCAGGCGCTTAGGATTCTGATAGCAGCAGGAGCAGTTGAAGTTGGCACTCACCGCAGTGATGGGCTGAGACTCAAATGTGAAGGGACTGATAAGAAGGAAATAGAGAATTTTTTGGACCAAGTTTCTGCAGATGAAGGGCCACAGTCACTGGTAGAGAAATGGACAACCTATTCCTCCGCTCATCAAATGGGGAGCTGTAGAATGGGAATCAATGAAAAAGAAGGCGCAGTTGATCAGAATGGGGAGAGCTGGGAAGCCGAAGGCCTATTTGTCTGTGTGTTGCCTAGTGCTGTTGGTGTCAATCTAATGATCACCATCGAATCAACTGCTTACTTTCTCTCAAAGAGAATAGCAGAATCTCTAAGAAAACAACCGTTTTCCTGTGTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

303

Amino Acids

33.09

Weight (kDa)

9.12

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMC_oxred_N	PF00732	2 - 61	2.9e-16	GMC oxidoreductase
GMC_oxred_C	PF05199	157 - 280	2.3e-17	GMC oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05890 AT1G05890 AT2G31510 AT2G31510 AT2G31510
fragaria_vesca	FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130
malus_domestica	MD04G1007200.v1.1 MD13G1275700.v1.1
prunus_persica	Prupe.1G191400_v2.0.a1
pyrus_communis	pycom04g03420 pycom13g28570
rosa_chinensis	RchiOBHm_Chr4g0407061
rosa_laevigata	RLG00000008740
rosa_multiflora	Rmu_sc0000600.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351790
rosa_rugosa	Rorug04G0077500 Rorug04G0077600 Rorug04G0077700
rosa_samantha	Rh4AG142400 Rh4BG140100 Rh4CG148900 Rh4DG136500
rosa_wichuraiana	Rw4G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	698
AciI	CCGC	3 cut(s)	249, 571, 696
AcsI	RAATTY	2 cut(s)	224, 625
AfiI	CCNNNNNNNGG	2 cut(s)	323, 433
AgsI	TTSAA	4 cut(s)	229, 311, 399, 557
AjnI	CCWGG	3 cut(s)	191, 328, 353
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AleI	CACNNNNGTG	1 cut(s)	573
AluBI	AGCT	4 cut(s)	104, 240, 714, 768
AluI	AGCT	4 cut(s)	104, 240, 714, 768
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	2 cut(s)	55, 580
AlwNI	CAGNNNCTG	1 cut(s)	667
AoxI	GGCC	5 cut(s)	189, 293, 326, 656, 781
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	224, 625
AseI	ATTAAT	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	526, 746
AspS9I	GGNCC	4 cut(s)	265, 326, 634, 656
AsuC2I	CCSGG	2 cut(s)	428, 442
AsuHPI	GGTGA	2 cut(s)	560, 823
AvaII	GGWCC	2 cut(s)	265, 634
BanII	GRGCYC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	3 cut(s)	311, 572, 842
BcgI	CGANNNNNNTGC	4 cut(s)	140, 174, 827, 861
BciT130I	CCWGG	3 cut(s)	193, 330, 355
BciVI	GTATCC	1 cut(s)	191
BclI	TGATCA	3 cut(s)	414, 751, 828
BcnI	CCSGG	2 cut(s)	428, 442
BcoDI	GTCTC	2 cut(s)	55, 580
BfaI	CTAG	4 cut(s)	132, 291, 368, 804
BfmI	CTRYAG	2 cut(s)	645, 715
BfoI	RGCGCY	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	191
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	5 cut(s)	193, 330, 355, 428, 442
Bme18I	GGWCC	2 cut(s)	265, 634
BmgT120I	GGNCC	4 cut(s)	265, 326, 634, 656
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	5 cut(s)	193, 330, 355, 428, 442
BmsI	GCATC	3 cut(s)	375, 472, 494
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
Bpu10I	CCTNAGC	1 cut(s)	527
BpuMI	CCSGG	2 cut(s)	428, 442
BsaBI	GATNNNNATC	1 cut(s)	833
BsaJI	CCNNGG	4 cut(s)	192, 353, 354, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 433
Bse118I	RCCGGY	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	672
Bse8I	GATNNNNATC	1 cut(s)	833
BseBI	CCWGG	3 cut(s)	193, 330, 355
BseDI	CCNNGG	4 cut(s)	192, 353, 354, 441
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	2 cut(s)	323, 433
BseMII	CTCAG	3 cut(s)	294, 380, 575
BseNI	ACTGG	1 cut(s)	672
BseXI	GCAGC	1 cut(s)	554
BseYI	CCCAGC	1 cut(s)	768
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	5 cut(s)	191, 295, 328, 658, 783
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	3 cut(s)	148, 427, 441
BslFI	GGGAC	2 cut(s)	336, 616
BslI	CCNNNNNNNGG	2 cut(s)	323, 433
BsmAI	GTCTC	2 cut(s)	55, 580
BsmFI	GGGAC	2 cut(s)	336, 616
BsnI	GGCC	5 cut(s)	191, 295, 328, 658, 783
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	126, 414, 751, 828
BspACI	CCGC	3 cut(s)	249, 571, 696
BspANI	GGCC	5 cut(s)	191, 295, 328, 658, 783
BspCNI	CTCAG	3 cut(s)	293, 381, 576
BspLI	GGNNCC	1 cut(s)	439
BspMAI	CTGCAG	1 cut(s)	649
BspQI	GCTCTTC	1 cut(s)	457
BsrBI	CCGCTC	1 cut(s)	698
BsrFI	RCCGGY	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	672
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	4 cut(s)	192, 353, 354, 441
BssMI	GATC	4 cut(s)	126, 414, 751, 828
Bst2UI	CCWGG	3 cut(s)	193, 330, 355
Bst4CI	ACNGT	2 cut(s)	663, 894
Bst6I	CTCTTC	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	5 cut(s)	280, 389, 527, 584, 881
BstENI	CCTNNNNNAGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	2 cut(s)	526, 746
BstKTI	GATC	4 cut(s)	129, 417, 754, 831
BstMAI	GTCTC	2 cut(s)	55, 580
BstMBI	GATC	4 cut(s)	126, 414, 751, 828
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 246, 548, 570
BstNI	CCWGG	3 cut(s)	193, 330, 355
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	5 cut(s)	191, 328, 353, 426, 440
BstSFI	CTRYAG	2 cut(s)	645, 715
BstV1I	GCAGC	1 cut(s)	554
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	5 cut(s)	191, 295, 328, 658, 783
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	580, 665
Cac8I	GCNNGC	1 cut(s)	522
CaiI	CAGNNNCTG	1 cut(s)	667
CfoI	GCGC	2 cut(s)	526, 746
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	4 cut(s)	265, 326, 634, 656
CviAII	CATG	4 cut(s)	96, 269, 373, 502
DdeI	CTNAG	5 cut(s)	280, 389, 527, 584, 881
DpnI	GATC	4 cut(s)	128, 416, 753, 830
DpnII	GATC	4 cut(s)	126, 414, 751, 828
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
EciI	GGCGGA	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	104
Eco147I	AGGCCT	1 cut(s)	783
Eco24I	GRGCYC	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	265, 634
Eco53kI	GAGCTC	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	3 cut(s)	191, 328, 353
EcoT22I	ATGCAT	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	106
FaeI	CATG	4 cut(s)	99, 272, 376, 505
FaiI	YATR	7 cut(s)	53, 97, 243, 270, 374, 474, 503
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	2 cut(s)	336, 616
FatI	CATG	4 cut(s)	95, 268, 372, 501
FbaI	TGATCA	3 cut(s)	414, 751, 828
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	4 cut(s)	132, 291, 368, 804
GlaI	GCGC	2 cut(s)	525, 745
GluI	GCNGC	1 cut(s)	543
GsaI	CCCAGC	1 cut(s)	772
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	5 cut(s)	191, 295, 328, 658, 783
HapII	CCGG	3 cut(s)	148, 427, 441
HhaI	GCGC	2 cut(s)	526, 746
Hin1II	CATG	4 cut(s)	99, 272, 376, 505
Hin6I	GCGC	2 cut(s)	524, 744
HinP1I	GCGC	2 cut(s)	524, 744
HinfI	GANTC	8 cut(s)	209, 287, 359, 532, 588, 726, 839, 875
HpaII	CCGG	3 cut(s)	148, 427, 441
HphI	GGTGA	2 cut(s)	560, 823
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	4 cut(s)	223, 490, 537, 756
Hpy188III	TCNNGA	2 cut(s)	363, 399
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	6 cut(s)	499, 593, 607, 647, 734, 773
HpyCH4III	ACNGT	2 cut(s)	663, 894
HpyCH4V	TGCA	5 cut(s)	67, 320, 407, 485, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 246, 548, 570
HpyF3I	CTNAG	5 cut(s)	280, 389, 527, 584, 881
Hsp92II	CATG	4 cut(s)	99, 272, 376, 505
HspAI	GCGC	2 cut(s)	524, 744
Ksp22I	TGATCA	3 cut(s)	414, 751, 828
Kzo9I	GATC	4 cut(s)	126, 414, 751, 828
LguI	GCTCTTC	1 cut(s)	457
LmnI	GCTCC	3 cut(s)	101, 548, 711
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	3 cut(s)	375, 472, 494
MaeI	CTAG	4 cut(s)	132, 291, 368, 804
MaeIII	GTNAC	3 cut(s)	44, 82, 663
MalI	GATC	4 cut(s)	128, 416, 753, 830
MbiI	CCGCTC	1 cut(s)	698
MboI	GATC	4 cut(s)	126, 414, 751, 828
MboII	GAAGA	5 cut(s)	19, 22, 158, 388, 474
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	5 cut(s)	69, 87, 217, 224, 625
MlyI	GAGTC	4 cut(s)	203, 281, 368, 582
MnlI	CCTC	7 cut(s)	67, 126, 238, 265, 451, 510, 703
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	3 cut(s)	41, 122, 216
MslI	CAYNNNNRTG	1 cut(s)	573
MspI	CCGG	3 cut(s)	148, 427, 441
MspR9I	CCNGG	5 cut(s)	193, 330, 355, 428, 442
MvaI	CCWGG	3 cut(s)	193, 330, 355
MwoI	GCNNNNNNNGC	4 cut(s)	101, 246, 548, 570
NciI	CCSGG	2 cut(s)	428, 442
NdeII	GATC	4 cut(s)	126, 414, 751, 828
NlaIII	CATG	4 cut(s)	99, 272, 376, 505
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	2 cut(s)	82, 663
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	99
OliI	CACNNNNGTG	1 cut(s)	573
PasI	CCCWGGG	1 cut(s)	354
PceI	AGGCCT	1 cut(s)	783
PciSI	GCTCTTC	1 cut(s)	457
PfeI	GAWTC	4 cut(s)	532, 726, 839, 875
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	4 cut(s)	203, 281, 367, 582
PpsI	GAGTC	4 cut(s)	203, 281, 367, 582
PshBI	ATTAAT	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	106
Psp6I	CCWGG	3 cut(s)	191, 328, 353
PspFI	CCCAGC	1 cut(s)	768
PspGI	CCWGG	3 cut(s)	191, 328, 353
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	4 cut(s)	265, 326, 634, 656
PstI	CTGCAG	1 cut(s)	649
PstNI	CAGNNNCTG	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	457
SaqAI	TTAA	3 cut(s)	41, 122, 216
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	4 cut(s)	126, 414, 751, 828
Sau96I	GGNCC	4 cut(s)	265, 326, 634, 656
SchI	GAGTC	4 cut(s)	203, 281, 368, 582
ScrFI	CCNGG	5 cut(s)	193, 330, 355, 428, 442
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	7 cut(s)	106, 118, 242, 276, 689, 716, 770
SfaNI	GCATC	3 cut(s)	375, 472, 494
SfcI	CTRYAG	2 cut(s)	645, 715
SinI	GGWCC	2 cut(s)	265, 634
SmiMI	CAYNNNNRTG	1 cut(s)	573
Sse9I	AATT	5 cut(s)	69, 87, 217, 224, 625
SseBI	AGGCCT	1 cut(s)	783
SsiI	CCGC	3 cut(s)	249, 571, 696
SspMI	CTAG	4 cut(s)	132, 291, 368, 804
SstI	GAGCTC	1 cut(s)	106
StuI	AGGCCT	1 cut(s)	783
StyD4I	CCNGG	5 cut(s)	191, 328, 353, 426, 440
TaaI	ACNGT	2 cut(s)	663, 894
TaqI	TCGA	3 cut(s)	160, 212, 837
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	5 cut(s)	69, 87, 217, 224, 625
TfiI	GAWTC	4 cut(s)	532, 726, 839, 875
Tru1I	TTAA	3 cut(s)	41, 122, 216
Tru9I	TTAA	3 cut(s)	41, 122, 216
TscAI	CASTG	2 cut(s)	580, 672
TseFI	GTSAC	2 cut(s)	82, 663
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	2 cut(s)	82, 663
TspDTI	ATGAA	5 cut(s)	158, 389, 518, 666, 747
TspRI	CASTG	2 cut(s)	580, 672
VpaK11BI	GGWCC	2 cut(s)	265, 634
VspI	ATTAAT	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	321
XapI	RAATTY	2 cut(s)	224, 625
XceI	RCATGY	1 cut(s)	99
XspI	CTAG	4 cut(s)	132, 291, 368, 804
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.