FvH4_4g11130

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
14920709 .. 14932769
12061 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11130.t6

Sequence Viewer

Length: 1692 bp
ATGAGAAAGAGAAGAGAGACGGGGATGGATTCCGAGGACGATATGCACGACGCCAACGACGTTGAATCCGACGACGACGGCTTCTACAGCGACGAGAACGACGCCGCCTCCGACTACAATAGCAACGACGACGACGATTACGTCATCGAGGAAGATGAAGACGGTATCAACATGATCCAGGCTCGTCGCCCTGAGAATAATTATGTTGTCTTGAAGGAGTTAGATATCAAGGAACGCCAGGAAGAGGATATTACAAGTGTATCTTCTGTGCTTTCCATATCAAGAGCTGCTTCAACCATCTTGCTTCGCTACTATAATTGGAATGTTAGTGAAGTGCATGAAGCATGGTTTGCAGATGAAGAGAGAGTCCGGAACACTGTTGGCTTGTTACCCGAGCCAGTTGTTCAGTTTGCGAACTCAAGAGAACTGATGTGTGGGATCTGTTTTGAAGCCTTTCCACGTAGTAAGCTAAAATCAGCAACTTGTGGTCATCCTTTCTGTTTTGAATGTTGGGAAGGCTACATTAGATCATCCATCAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCATCTTGCGGTGCTGCTGTTGGTCAAGACATGATTCATATGTTTGCCTGTGATGATGATAAGTGCAAGTACTCTAAGTACCTGCTTAGGTCTTTTGTTGAAGACAACAAGAAGACCAAGTGGTGTCCAGCTCCAGGTTGTGAGCATGCTGTTAATTATGTTGGTGATAATGAAAATTATGATGTTTCTTGCCTCTGTTCATATGACTTTTGCTGGAATTGTACGGAGGAAACCCATCGTCCTGTGAACTGCAACACCGTAAAGTTATGGATTTTGAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCCAATTCCAAGCCATGTCCAAAGTGCAAGCGACCGATTGAAAAAAACCAAGGGTGTATGCACATGACATGCTCACCAGCTTGTAAATTTGAGTTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAGAGGACAGGTGGTTTCTATGCTTGTAATCGCTATGAGGCAGCTAAGCAAGAGGGAGTTTATGATGAAGCTGAGAGAAGAAGAGAAATGGCAAAGAATTCTTTGGAGAGATACACTCATTATTATGAACGTTGGGCAAGCAATCAATCGTCAAGGCAGAAAGCTCTTGCTGATTTACATCAAATGCAAACTGTCAACATGGAGAAGCTGAGTGAGATACAGGGTCAACCCGAGTCTCAGCTCAAGTTCTTATCTGATGCCTGGCAACAGATTGTTGAATGTAGGAGAGTGCTGAAATGGACTTATGCCTACGGATACTACTTAACTGAGCATGAAAGTGCTAAGAAACAGTTTTTTGAGTACTTGCAAGGTGAGGCAGAGTCTGGGCTGGAAAGGCTTCATCAATGTGCAGAGAAGGAGCTACTACCATTCCTCAATGCTGATGGCCCATCACAAGAATTCATTGAATTCCATACAAAATTAGCAGGACTGACTGCGGTGACTAAATCCTACTTTGAGAATCTGGTGAGGGCATTGGAGAATCACCTATCAGATGTGGACTGTCACCAAACTAGCAATCGGGCAACAAGCTCAAAAAATGGAACTAGTAAAGGAAAAGGTGGCAGAGGAAAGGAAAGTAGTCGAGCTGGTGGCTCCAGCAGAAACTAA

Protein Analysis

564

Amino Acids

64.44

Weight (kDa)

5.11

Isoelectric Point (pI)

59.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 72 - 133 1.1e-14 IBR domain, a half RING-finger domain
IBR PF01485 150 - 197 8.4e-08 IBR domain, a half RING-finger domain
IBR_1 PF22191 155 - 195 6.6e-15 IBR domain
IBR_2 PF22605 156 - 195 2.6e-13 IBR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 666
AccIII TCCGGA 1 cut(s) 369
AciI CCGC 3 cut(s) 105, 585, 1520
AclI AACGTT 1 cut(s) 1153
AclWI GGATC 3 cut(s) 169, 446, 569
AcsI RAATTY 4 cut(s) 977, 1120, 1481, 1490
AcyI GRCGYC 2 cut(s) 51, 102
AfaI GTAC 4 cut(s) 647, 656, 799, 1385
AfiI CCNNNNNNNGG 3 cut(s) 244, 584, 710
AhlI ACTAGT 1 cut(s) 1628
AjnI CCWGG 5 cut(s) 177, 237, 547, 709, 1283
Alw26I GTCTC 2 cut(s) 11, 1263
AlwI GGATC 3 cut(s) 169, 446, 569
AlwNI CAGNNNCTG 1 cut(s) 1406
Ama87I CYCGRG 2 cut(s) 392, 1253
Aor13HI TCCGGA 1 cut(s) 369
AoxI GGCC 1 cut(s) 1468
ApeKI GCWGC 3 cut(s) 287, 590, 1064
ApoI RAATTY 4 cut(s) 977, 1120, 1481, 1490
Asp700I GAANNNNTTC 2 cut(s) 453, 1419
AspS9I GGNCC 2 cut(s) 545, 1469
AsuHPI GGTGA 8 cut(s) 752, 957, 1034, 1406, 1534, 1559, 1561, 1580
AvaI CYCGRG 2 cut(s) 392, 1253
AvaII GGWCC 1 cut(s) 545
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BbsI GAAGAC 3 cut(s) 165, 684, 695
BbvI GCAGC 3 cut(s) 274, 577, 1076
BccI CCATC 8 cut(s) 19, 305, 536, 542, 586, 819, 1460, 1480
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 5 cut(s) 179, 239, 549, 711, 1285
BciVI GTATCC 1 cut(s) 1331
BcoDI GTCTC 2 cut(s) 11, 1263
BcuI ACTAGT 1 cut(s) 1628
BfaI CTAG 2 cut(s) 1596, 1629
BfmI CTRYAG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 666
BfuI GTATCC 1 cut(s) 1331
BisI GCNGC 4 cut(s) 105, 288, 591, 1065
BlpI GCTNAGC 1 cut(s) 1068
BlsI GCNGC 4 cut(s) 106, 289, 592, 1066
BmcAI AGTACT 2 cut(s) 647, 1385
Bme1390I CCNGG 5 cut(s) 179, 239, 549, 711, 1285
Bme18I GGWCC 1 cut(s) 545
BmeT110I CYCGRG 2 cut(s) 392, 1253
BmgT120I GGNCC 2 cut(s) 545, 1469
BmiI GGNNCC 1 cut(s) 1678
BmrFI CCNGG 5 cut(s) 179, 239, 549, 711, 1285
BmsI GCATC 2 cut(s) 549, 1270
BpiI GAAGAC 3 cut(s) 165, 684, 695
BplI GAGNNNNNCTC 2 cut(s) 1123, 1155
BpmI CTGGAG 2 cut(s) 693, 1663
Bpu10I CCTNAGC 1 cut(s) 662
Bpu1102I GCTNAGC 1 cut(s) 1068
BpuEI CTTGAG 2 cut(s) 403, 1250
BsaAI YACGTR 1 cut(s) 461
BsaBI GATNNNNATC 1 cut(s) 1200
BsaHI GRCGYC 2 cut(s) 51, 102
BsaJI CCNNGG 4 cut(s) 33, 940, 1000, 1018
BsaWI WCCGGW 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 584, 710
Bse1I ACTGG 2 cut(s) 398, 887
Bse8I GATNNNNATC 1 cut(s) 1200
BseAI TCCGGA 1 cut(s) 369
BseBI CCWGG 5 cut(s) 179, 239, 549, 711, 1285
BseDI CCNNGG 4 cut(s) 33, 940, 1000, 1018
BseGI GGATG 4 cut(s) 30, 490, 530, 557
BseJI GATNNNNATC 1 cut(s) 1200
BseLI CCNNNNNNNGG 3 cut(s) 244, 584, 710
BseMII CTCAG 7 cut(s) 183, 554, 855, 1086, 1223, 1274, 1341
BseNI ACTGG 2 cut(s) 398, 887
BseXI GCAGC 3 cut(s) 274, 577, 1076
BsgI GTGCAG 1 cut(s) 1452
Bsh1285I CGRYCG 1 cut(s) 926
BshFI GGCC 1 cut(s) 1470
BsiEI CGRYCG 1 cut(s) 926
BsiHKCI CYCGRG 2 cut(s) 392, 1253
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 3 cut(s) 244, 584, 710
BsmAI GTCTC 2 cut(s) 11, 1263
BsmBI CGTCTC 1 cut(s) 11
BsnI GGCC 1 cut(s) 1470
BsoBI CYCGRG 2 cut(s) 392, 1253
Bsp13I TCCGGA 1 cut(s) 369
Bsp143I GATC 4 cut(s) 174, 438, 527, 574
Bsp1720I GCTNAGC 1 cut(s) 1068
Bsp19I CCATGG 1 cut(s) 1018
BspACI CCGC 3 cut(s) 105, 585, 1520
BspANI GGCC 1 cut(s) 1470
BspCNI CTCAG 7 cut(s) 184, 555, 856, 1087, 1224, 1273, 1342
BspEI TCCGGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 1678
BspMI ACCTGC 1 cut(s) 666
BspPI GGATC 3 cut(s) 169, 446, 569
BsrI ACTGG 2 cut(s) 398, 887
BssECI CCNNGG 4 cut(s) 33, 940, 1000, 1018
BssMI GATC 4 cut(s) 174, 438, 527, 574
BssNI GRCGYC 2 cut(s) 51, 102
BssT1I CCWWGG 3 cut(s) 940, 1000, 1018
Bst2UI CCWGG 5 cut(s) 179, 239, 549, 711, 1285
Bst4CI ACNGT 7 cut(s) 164, 379, 835, 860, 1216, 1374, 1586
Bst6I CTCTTC 4 cut(s) 7, 237, 354, 1099
BstACI GRCGYC 2 cut(s) 51, 102
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 461
BstC8I GCNNGC 4 cut(s) 723, 920, 992, 1162
BstDSI CCRYGG 1 cut(s) 1018
BstF5I GGATG 4 cut(s) 30, 490, 530, 557
BstKTI GATC 4 cut(s) 177, 441, 530, 577
BstMAI GTCTC 2 cut(s) 11, 1263
BstMBI GATC 4 cut(s) 174, 438, 527, 574
BstMCI CGRYCG 1 cut(s) 926
BstMWI GCNNNNNNNGC 4 cut(s) 87, 350, 996, 1417
BstNI CCWGG 5 cut(s) 179, 239, 549, 711, 1285
BstNSI RCATGY 2 cut(s) 725, 963
BstSCI CCNGG 5 cut(s) 177, 237, 547, 709, 1283
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 3 cut(s) 274, 577, 1076
BstV2I GAAGAC 3 cut(s) 165, 684, 695
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
BsuI GTATCC 1 cut(s) 1331
BsuRI GGCC 1 cut(s) 1470
BtgI CCRYGG 1 cut(s) 1018
BtsCI GGATG 4 cut(s) 30, 490, 530, 557
BtsIMutI CAGTG 2 cut(s) 375, 865
BveI ACCTGC 1 cut(s) 666
Cac8I GCNNGC 4 cut(s) 723, 920, 992, 1162
CaiI CAGNNNCTG 1 cut(s) 1406
Cfr13I GGNCC 2 cut(s) 545, 1469
CseI GACGC 2 cut(s) 59, 110
Csp6I GTAC 4 cut(s) 646, 655, 798, 1384
CviQI GTAC 4 cut(s) 646, 655, 798, 1384
DpnI GATC 4 cut(s) 176, 440, 529, 576
DpnII GATC 4 cut(s) 174, 438, 527, 574
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Eam1104I CTCTTC 4 cut(s) 7, 237, 354, 1099
EarI CTCTTC 4 cut(s) 7, 237, 354, 1099
Eco130I CCWWGG 3 cut(s) 940, 1000, 1018
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 545
Eco88I CYCGRG 2 cut(s) 392, 1253
EcoRI GAATTC 3 cut(s) 1120, 1481, 1490
EcoRII CCWGG 5 cut(s) 177, 237, 547, 709, 1283
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 3 cut(s) 940, 1000, 1018
ErhI CCWWGG 3 cut(s) 940, 1000, 1018
Esp3I CGTCTC 1 cut(s) 11
FalI AAGNNNNNCTT 4 cut(s) 247, 279, 274, 306
FauNDI CATATG 2 cut(s) 615, 778
Fnu4HI GCNGC 4 cut(s) 105, 288, 591, 1065
FokI GGATG 4 cut(s) 37, 477, 517, 564
Fsp4HI GCNGC 4 cut(s) 105, 288, 591, 1065
FspBI CTAG 2 cut(s) 1596, 1629
GluI GCNGC 4 cut(s) 105, 288, 591, 1065
GsuI CTGGAG 2 cut(s) 693, 1663
HaeIII GGCC 1 cut(s) 1470
HapII CCGG 1 cut(s) 370
HgaI GACGC 2 cut(s) 59, 110
Hin1I GRCGYC 2 cut(s) 51, 102
HincII GTYRAC 2 cut(s) 1219, 1250
HindII GTYRAC 2 cut(s) 1219, 1250
HinfI GANTC 9 cut(s) 29, 65, 366, 610, 866, 1256, 1403, 1543, 1564
HpaII CCGG 1 cut(s) 370
HphI GGTGA 8 cut(s) 752, 957, 1034, 1406, 1534, 1559, 1561, 1580
Hpy166II GTNNAC 4 cut(s) 823, 1219, 1250, 1582
Hpy188I TCNGA 7 cut(s) 34, 70, 112, 871, 1015, 1279, 1576
Hpy188III TCNNGA 6 cut(s) 211, 282, 370, 420, 572, 602
Hpy8I GTNNAC 4 cut(s) 823, 1219, 1250, 1582
HpyAV CCTTC 3 cut(s) 208, 509, 1432
HpyCH4III ACNGT 7 cut(s) 164, 379, 835, 860, 1216, 1374, 1586
HpyCH4IV ACGT 4 cut(s) 60, 141, 460, 1153
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 350, 996, 1417
HpySE526I ACGT 4 cut(s) 60, 141, 460, 1153
Hsp92I GRCGYC 2 cut(s) 51, 102
Kpn2I TCCGGA 1 cut(s) 369
Kzo9I GATC 4 cut(s) 174, 438, 527, 574
LmnI GCTCC 3 cut(s) 712, 1441, 1682
Lsp1109I GCAGC 3 cut(s) 274, 577, 1076
LweI GCATC 2 cut(s) 549, 1270
MaeI CTAG 2 cut(s) 1596, 1629
MaeII ACGT 4 cut(s) 60, 141, 460, 1153
MaeIII GTNAC 3 cut(s) 387, 1522, 1586
MalI GATC 4 cut(s) 176, 440, 529, 576
MboI GATC 4 cut(s) 174, 438, 527, 574
MflI RGATCY 1 cut(s) 438
MlyI GAGTC 4 cut(s) 375, 875, 1265, 1412
MmeI TCCRAC 2 cut(s) 93, 135
MroI TCCGGA 1 cut(s) 369
MroXI GAANNNNTTC 2 cut(s) 453, 1419
MseI TTAA 2 cut(s) 729, 1346
MslI CAYNNNNRTG 3 cut(s) 1146, 1359, 1428
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 5 cut(s) 179, 239, 549, 711, 1285
MvaI CCWGG 5 cut(s) 179, 239, 549, 711, 1285
MwoI GCNNNNNNNGC 4 cut(s) 87, 350, 996, 1417
NcoI CCATGG 1 cut(s) 1018
NdeI CATATG 2 cut(s) 615, 778
NdeII GATC 4 cut(s) 174, 438, 527, 574
NlaIV GGNNCC 1 cut(s) 1678
NmuCI GTSAC 2 cut(s) 1522, 1586
NspI RCATGY 2 cut(s) 725, 963
PaeI GCATGC 1 cut(s) 725
PcsI WCGNNNNNNNCGW 7 cut(s) 45, 54, 57, 66, 108, 132, 138
PdmI GAANNNNTTC 2 cut(s) 453, 1419
PfeI GAWTC 5 cut(s) 29, 65, 610, 1543, 1564
PfoI TCCNGGA 1 cut(s) 547
PkrI GCNGC 4 cut(s) 106, 289, 592, 1066
PleI GAGTC 4 cut(s) 374, 874, 1264, 1411
PpsI GAGTC 4 cut(s) 374, 874, 1264, 1411
Ppu21I YACGTR 1 cut(s) 461
Psp1406I AACGTT 1 cut(s) 1153
Psp6I CCWGG 5 cut(s) 177, 237, 547, 709, 1283
PspGI CCWGG 5 cut(s) 177, 237, 547, 709, 1283
PspN4I GGNNCC 1 cut(s) 1678
PspPI GGNCC 2 cut(s) 545, 1469
PstNI CAGNNNCTG 1 cut(s) 1406
PsuI RGATCY 1 cut(s) 438
RsaI GTAC 4 cut(s) 647, 656, 799, 1385
RsaNI GTAC 4 cut(s) 646, 655, 798, 1384
RseI CAYNNNNRTG 3 cut(s) 1146, 1359, 1428
SaqAI TTAA 2 cut(s) 729, 1346
SatI GCNGC 4 cut(s) 105, 288, 591, 1065
Sau3AI GATC 4 cut(s) 174, 438, 527, 574
Sau96I GGNCC 2 cut(s) 545, 1469
ScaI AGTACT 2 cut(s) 647, 1385
SchI GAGTC 4 cut(s) 375, 875, 1265, 1412
ScrFI CCNGG 5 cut(s) 179, 239, 549, 711, 1285
SfaNI GCATC 2 cut(s) 549, 1270
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 3 cut(s) 1146, 1359, 1428
SmlI CTYRAG 2 cut(s) 418, 1265
SmoI CTYRAG 2 cut(s) 418, 1265
SpeI ACTAGT 1 cut(s) 1628
SphI GCATGC 1 cut(s) 725
SsiI CCGC 3 cut(s) 105, 585, 1520
SspMI CTAG 2 cut(s) 1596, 1629
StyD4I CCNGG 5 cut(s) 177, 237, 547, 709, 1283
StyI CCWWGG 3 cut(s) 940, 1000, 1018
TaaI ACNGT 7 cut(s) 164, 379, 835, 860, 1216, 1374, 1586
TaiI ACGT 4 cut(s) 63, 144, 463, 1156
TaqI TCGA 2 cut(s) 147, 1666
TaqII GACCGA 1 cut(s) 940
TatI WGTACW 2 cut(s) 645, 1383
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 5 cut(s) 29, 65, 610, 1543, 1564
Tru1I TTAA 2 cut(s) 729, 1346
Tru9I TTAA 2 cut(s) 729, 1346
TscAI CASTG 2 cut(s) 382, 865
TseFI GTSAC 2 cut(s) 1522, 1586
TseI GCWGC 3 cut(s) 287, 590, 1064
Tsp45I GTSAC 2 cut(s) 1522, 1586
TspGWI ACGGA 2 cut(s) 815, 1350
TspRI CASTG 2 cut(s) 382, 865
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 4 cut(s) 977, 1120, 1481, 1490
XceI RCATGY 2 cut(s) 725, 963
XmnI GAANNNNTTC 2 cut(s) 453, 1419
XspI CTAG 2 cut(s) 1596, 1629
ZrmI AGTACT 2 cut(s) 647, 1385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.