E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05890 AT1G05890 AT2G31510 AT2G31510 AT2G31510 |
| fragaria_vesca | FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 FvH4_4g11130 |
| malus_domestica | MD04G1007200.v1.1 MD13G1275700.v1.1 |
| prunus_persica | Prupe.1G191400_v2.0.a1 |
| pyrus_communis | pycom04g03420 pycom13g28570 |
| rosa_chinensis | RchiOBHm_Chr4g0407061 |
| rosa_laevigata | RLG00000008740 |
| rosa_multiflora | Rmu_sc0000600.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00351790 |
| rosa_rugosa | Rorug04G0077500 Rorug04G0077600 Rorug04G0077700 |
| rosa_samantha | Rh4AG142400 Rh4BG140100 Rh4CG148900 Rh4DG136500 |
| rosa_wichuraiana | Rw4G011600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 140 |
| Acc36I | ACCTGC | 1 cut(s) | 666 |
| AccIII | TCCGGA | 1 cut(s) | 369 |
| AciI | CCGC | 3 cut(s) | 105, 585, 1520 |
| AclI | AACGTT | 1 cut(s) | 1153 |
| AclWI | GGATC | 3 cut(s) | 169, 446, 569 |
| AcsI | RAATTY | 4 cut(s) | 977, 1120, 1481, 1490 |
| AcyI | GRCGYC | 2 cut(s) | 51, 102 |
| AfaI | GTAC | 4 cut(s) | 647, 656, 799, 1385 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 244, 584, 710 |
| AhlI | ACTAGT | 1 cut(s) | 1628 |
| AjnI | CCWGG | 5 cut(s) | 177, 237, 547, 709, 1283 |
| Alw26I | GTCTC | 2 cut(s) | 11, 1263 |
| AlwI | GGATC | 3 cut(s) | 169, 446, 569 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1406 |
| Ama87I | CYCGRG | 2 cut(s) | 392, 1253 |
| Aor13HI | TCCGGA | 1 cut(s) | 369 |
| AoxI | GGCC | 1 cut(s) | 1468 |
| ApeKI | GCWGC | 3 cut(s) | 287, 590, 1064 |
| ApoI | RAATTY | 4 cut(s) | 977, 1120, 1481, 1490 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 453, 1419 |
| AspS9I | GGNCC | 2 cut(s) | 545, 1469 |
| AsuHPI | GGTGA | 8 cut(s) | 752, 957, 1034, 1406, 1534, 1559, 1561, 1580 |
| AvaI | CYCGRG | 2 cut(s) | 392, 1253 |
| AvaII | GGWCC | 1 cut(s) | 545 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 243, 276 |
| BbsI | GAAGAC | 3 cut(s) | 165, 684, 695 |
| BbvI | GCAGC | 3 cut(s) | 274, 577, 1076 |
| BccI | CCATC | 8 cut(s) | 19, 305, 536, 542, 586, 819, 1460, 1480 |
| BceAI | ACGGC | 1 cut(s) | 94 |
| BciT130I | CCWGG | 5 cut(s) | 179, 239, 549, 711, 1285 |
| BciVI | GTATCC | 1 cut(s) | 1331 |
| BcoDI | GTCTC | 2 cut(s) | 11, 1263 |
| BcuI | ACTAGT | 1 cut(s) | 1628 |
| BfaI | CTAG | 2 cut(s) | 1596, 1629 |
| BfmI | CTRYAG | 1 cut(s) | 85 |
| BfuAI | ACCTGC | 1 cut(s) | 666 |
| BfuI | GTATCC | 1 cut(s) | 1331 |
| BisI | GCNGC | 4 cut(s) | 105, 288, 591, 1065 |
| BlpI | GCTNAGC | 1 cut(s) | 1068 |
| BlsI | GCNGC | 4 cut(s) | 106, 289, 592, 1066 |
| BmcAI | AGTACT | 2 cut(s) | 647, 1385 |
| Bme1390I | CCNGG | 5 cut(s) | 179, 239, 549, 711, 1285 |
| Bme18I | GGWCC | 1 cut(s) | 545 |
| BmeT110I | CYCGRG | 2 cut(s) | 392, 1253 |
| BmgT120I | GGNCC | 2 cut(s) | 545, 1469 |
| BmiI | GGNNCC | 1 cut(s) | 1678 |
| BmrFI | CCNGG | 5 cut(s) | 179, 239, 549, 711, 1285 |
| BmsI | GCATC | 2 cut(s) | 549, 1270 |
| BpiI | GAAGAC | 3 cut(s) | 165, 684, 695 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1123, 1155 |
| BpmI | CTGGAG | 2 cut(s) | 693, 1663 |
| Bpu10I | CCTNAGC | 1 cut(s) | 662 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1068 |
| BpuEI | CTTGAG | 2 cut(s) | 403, 1250 |
| BsaAI | YACGTR | 1 cut(s) | 461 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1200 |
| BsaHI | GRCGYC | 2 cut(s) | 51, 102 |
| BsaJI | CCNNGG | 4 cut(s) | 33, 940, 1000, 1018 |
| BsaWI | WCCGGW | 1 cut(s) | 369 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 92, 122 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 244, 584, 710 |
| Bse1I | ACTGG | 2 cut(s) | 398, 887 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1200 |
| BseAI | TCCGGA | 1 cut(s) | 369 |
| BseBI | CCWGG | 5 cut(s) | 179, 239, 549, 711, 1285 |
| BseDI | CCNNGG | 4 cut(s) | 33, 940, 1000, 1018 |
| BseGI | GGATG | 4 cut(s) | 30, 490, 530, 557 |
| BseJI | GATNNNNATC | 1 cut(s) | 1200 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 244, 584, 710 |
| BseMII | CTCAG | 7 cut(s) | 183, 554, 855, 1086, 1223, 1274, 1341 |
| BseNI | ACTGG | 2 cut(s) | 398, 887 |
| BseXI | GCAGC | 3 cut(s) | 274, 577, 1076 |
| BsgI | GTGCAG | 1 cut(s) | 1452 |
| Bsh1285I | CGRYCG | 1 cut(s) | 926 |
| BshFI | GGCC | 1 cut(s) | 1470 |
| BsiEI | CGRYCG | 1 cut(s) | 926 |
| BsiHKCI | CYCGRG | 2 cut(s) | 392, 1253 |
| BsiSI | CCGG | 1 cut(s) | 370 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 244, 584, 710 |
| BsmAI | GTCTC | 2 cut(s) | 11, 1263 |
| BsmBI | CGTCTC | 1 cut(s) | 11 |
| BsnI | GGCC | 1 cut(s) | 1470 |
| BsoBI | CYCGRG | 2 cut(s) | 392, 1253 |
| Bsp13I | TCCGGA | 1 cut(s) | 369 |
| Bsp143I | GATC | 4 cut(s) | 174, 438, 527, 574 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1068 |
| Bsp19I | CCATGG | 1 cut(s) | 1018 |
| BspACI | CCGC | 3 cut(s) | 105, 585, 1520 |
| BspANI | GGCC | 1 cut(s) | 1470 |
| BspCNI | CTCAG | 7 cut(s) | 184, 555, 856, 1087, 1224, 1273, 1342 |
| BspEI | TCCGGA | 1 cut(s) | 369 |
| BspLI | GGNNCC | 1 cut(s) | 1678 |
| BspMI | ACCTGC | 1 cut(s) | 666 |
| BspPI | GGATC | 3 cut(s) | 169, 446, 569 |
| BsrI | ACTGG | 2 cut(s) | 398, 887 |
| BssECI | CCNNGG | 4 cut(s) | 33, 940, 1000, 1018 |
| BssMI | GATC | 4 cut(s) | 174, 438, 527, 574 |
| BssNI | GRCGYC | 2 cut(s) | 51, 102 |
| BssT1I | CCWWGG | 3 cut(s) | 940, 1000, 1018 |
| Bst2UI | CCWGG | 5 cut(s) | 179, 239, 549, 711, 1285 |
| Bst4CI | ACNGT | 7 cut(s) | 164, 379, 835, 860, 1216, 1374, 1586 |
| Bst6I | CTCTTC | 4 cut(s) | 7, 237, 354, 1099 |
| BstACI | GRCGYC | 2 cut(s) | 51, 102 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 350 |
| BstBAI | YACGTR | 1 cut(s) | 461 |
| BstC8I | GCNNGC | 4 cut(s) | 723, 920, 992, 1162 |
| BstDSI | CCRYGG | 1 cut(s) | 1018 |
| BstF5I | GGATG | 4 cut(s) | 30, 490, 530, 557 |
| BstKTI | GATC | 4 cut(s) | 177, 441, 530, 577 |
| BstMAI | GTCTC | 2 cut(s) | 11, 1263 |
| BstMBI | GATC | 4 cut(s) | 174, 438, 527, 574 |
| BstMCI | CGRYCG | 1 cut(s) | 926 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 87, 350, 996, 1417 |
| BstNI | CCWGG | 5 cut(s) | 179, 239, 549, 711, 1285 |
| BstNSI | RCATGY | 2 cut(s) | 725, 963 |
| BstSCI | CCNGG | 5 cut(s) | 177, 237, 547, 709, 1283 |
| BstSFI | CTRYAG | 1 cut(s) | 85 |
| BstV1I | GCAGC | 3 cut(s) | 274, 577, 1076 |
| BstV2I | GAAGAC | 3 cut(s) | 165, 684, 695 |
| BstX2I | RGATCY | 1 cut(s) | 438 |
| BstYI | RGATCY | 1 cut(s) | 438 |
| BsuI | GTATCC | 1 cut(s) | 1331 |
| BsuRI | GGCC | 1 cut(s) | 1470 |
| BtgI | CCRYGG | 1 cut(s) | 1018 |
| BtsCI | GGATG | 4 cut(s) | 30, 490, 530, 557 |
| BtsIMutI | CAGTG | 2 cut(s) | 375, 865 |
| BveI | ACCTGC | 1 cut(s) | 666 |
| Cac8I | GCNNGC | 4 cut(s) | 723, 920, 992, 1162 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1406 |
| Cfr13I | GGNCC | 2 cut(s) | 545, 1469 |
| CseI | GACGC | 2 cut(s) | 59, 110 |
| Csp6I | GTAC | 4 cut(s) | 646, 655, 798, 1384 |
| CviQI | GTAC | 4 cut(s) | 646, 655, 798, 1384 |
| DpnI | GATC | 4 cut(s) | 176, 440, 529, 576 |
| DpnII | GATC | 4 cut(s) | 174, 438, 527, 574 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 140 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 140 |
| Eam1104I | CTCTTC | 4 cut(s) | 7, 237, 354, 1099 |
| EarI | CTCTTC | 4 cut(s) | 7, 237, 354, 1099 |
| Eco130I | CCWWGG | 3 cut(s) | 940, 1000, 1018 |
| Eco32I | GATATC | 1 cut(s) | 226 |
| Eco47I | GGWCC | 1 cut(s) | 545 |
| Eco88I | CYCGRG | 2 cut(s) | 392, 1253 |
| EcoRI | GAATTC | 3 cut(s) | 1120, 1481, 1490 |
| EcoRII | CCWGG | 5 cut(s) | 177, 237, 547, 709, 1283 |
| EcoRV | GATATC | 1 cut(s) | 226 |
| EcoT14I | CCWWGG | 3 cut(s) | 940, 1000, 1018 |
| ErhI | CCWWGG | 3 cut(s) | 940, 1000, 1018 |
| Esp3I | CGTCTC | 1 cut(s) | 11 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 247, 279, 274, 306 |
| FauNDI | CATATG | 2 cut(s) | 615, 778 |
| Fnu4HI | GCNGC | 4 cut(s) | 105, 288, 591, 1065 |
| FokI | GGATG | 4 cut(s) | 37, 477, 517, 564 |
| Fsp4HI | GCNGC | 4 cut(s) | 105, 288, 591, 1065 |
| FspBI | CTAG | 2 cut(s) | 1596, 1629 |
| GluI | GCNGC | 4 cut(s) | 105, 288, 591, 1065 |
| GsuI | CTGGAG | 2 cut(s) | 693, 1663 |
| HaeIII | GGCC | 1 cut(s) | 1470 |
| HapII | CCGG | 1 cut(s) | 370 |
| HgaI | GACGC | 2 cut(s) | 59, 110 |
| Hin1I | GRCGYC | 2 cut(s) | 51, 102 |
| HincII | GTYRAC | 2 cut(s) | 1219, 1250 |
| HindII | GTYRAC | 2 cut(s) | 1219, 1250 |
| HinfI | GANTC | 9 cut(s) | 29, 65, 366, 610, 866, 1256, 1403, 1543, 1564 |
| HpaII | CCGG | 1 cut(s) | 370 |
| HphI | GGTGA | 8 cut(s) | 752, 957, 1034, 1406, 1534, 1559, 1561, 1580 |
| Hpy166II | GTNNAC | 4 cut(s) | 823, 1219, 1250, 1582 |
| Hpy188I | TCNGA | 7 cut(s) | 34, 70, 112, 871, 1015, 1279, 1576 |
| Hpy188III | TCNNGA | 6 cut(s) | 211, 282, 370, 420, 572, 602 |
| Hpy8I | GTNNAC | 4 cut(s) | 823, 1219, 1250, 1582 |
| HpyAV | CCTTC | 3 cut(s) | 208, 509, 1432 |
| HpyCH4III | ACNGT | 7 cut(s) | 164, 379, 835, 860, 1216, 1374, 1586 |
| HpyCH4IV | ACGT | 4 cut(s) | 60, 141, 460, 1153 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 87, 350, 996, 1417 |
| HpySE526I | ACGT | 4 cut(s) | 60, 141, 460, 1153 |
| Hsp92I | GRCGYC | 2 cut(s) | 51, 102 |
| Kpn2I | TCCGGA | 1 cut(s) | 369 |
| Kzo9I | GATC | 4 cut(s) | 174, 438, 527, 574 |
| LmnI | GCTCC | 3 cut(s) | 712, 1441, 1682 |
| Lsp1109I | GCAGC | 3 cut(s) | 274, 577, 1076 |
| LweI | GCATC | 2 cut(s) | 549, 1270 |
| MaeI | CTAG | 2 cut(s) | 1596, 1629 |
| MaeII | ACGT | 4 cut(s) | 60, 141, 460, 1153 |
| MaeIII | GTNAC | 3 cut(s) | 387, 1522, 1586 |
| MalI | GATC | 4 cut(s) | 176, 440, 529, 576 |
| MboI | GATC | 4 cut(s) | 174, 438, 527, 574 |
| MflI | RGATCY | 1 cut(s) | 438 |
| MlyI | GAGTC | 4 cut(s) | 375, 875, 1265, 1412 |
| MmeI | TCCRAC | 2 cut(s) | 93, 135 |
| MroI | TCCGGA | 1 cut(s) | 369 |
| MroXI | GAANNNNTTC | 2 cut(s) | 453, 1419 |
| MseI | TTAA | 2 cut(s) | 729, 1346 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1146, 1359, 1428 |
| MspI | CCGG | 1 cut(s) | 370 |
| MspR9I | CCNGG | 5 cut(s) | 179, 239, 549, 711, 1285 |
| MvaI | CCWGG | 5 cut(s) | 179, 239, 549, 711, 1285 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 87, 350, 996, 1417 |
| NcoI | CCATGG | 1 cut(s) | 1018 |
| NdeI | CATATG | 2 cut(s) | 615, 778 |
| NdeII | GATC | 4 cut(s) | 174, 438, 527, 574 |
| NlaIV | GGNNCC | 1 cut(s) | 1678 |
| NmuCI | GTSAC | 2 cut(s) | 1522, 1586 |
| NspI | RCATGY | 2 cut(s) | 725, 963 |
| PaeI | GCATGC | 1 cut(s) | 725 |
| PcsI | WCGNNNNNNNCGW | 7 cut(s) | 45, 54, 57, 66, 108, 132, 138 |
| PdmI | GAANNNNTTC | 2 cut(s) | 453, 1419 |
| PfeI | GAWTC | 5 cut(s) | 29, 65, 610, 1543, 1564 |
| PfoI | TCCNGGA | 1 cut(s) | 547 |
| PkrI | GCNGC | 4 cut(s) | 106, 289, 592, 1066 |
| PleI | GAGTC | 4 cut(s) | 374, 874, 1264, 1411 |
| PpsI | GAGTC | 4 cut(s) | 374, 874, 1264, 1411 |
| Ppu21I | YACGTR | 1 cut(s) | 461 |
| Psp1406I | AACGTT | 1 cut(s) | 1153 |
| Psp6I | CCWGG | 5 cut(s) | 177, 237, 547, 709, 1283 |
| PspGI | CCWGG | 5 cut(s) | 177, 237, 547, 709, 1283 |
| PspN4I | GGNNCC | 1 cut(s) | 1678 |
| PspPI | GGNCC | 2 cut(s) | 545, 1469 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1406 |
| PsuI | RGATCY | 1 cut(s) | 438 |
| RsaI | GTAC | 4 cut(s) | 647, 656, 799, 1385 |
| RsaNI | GTAC | 4 cut(s) | 646, 655, 798, 1384 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1146, 1359, 1428 |
| SaqAI | TTAA | 2 cut(s) | 729, 1346 |
| SatI | GCNGC | 4 cut(s) | 105, 288, 591, 1065 |
| Sau3AI | GATC | 4 cut(s) | 174, 438, 527, 574 |
| Sau96I | GGNCC | 2 cut(s) | 545, 1469 |
| ScaI | AGTACT | 2 cut(s) | 647, 1385 |
| SchI | GAGTC | 4 cut(s) | 375, 875, 1265, 1412 |
| ScrFI | CCNGG | 5 cut(s) | 179, 239, 549, 711, 1285 |
| SfaNI | GCATC | 2 cut(s) | 549, 1270 |
| SfcI | CTRYAG | 1 cut(s) | 85 |
| SinI | GGWCC | 1 cut(s) | 545 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1146, 1359, 1428 |
| SmlI | CTYRAG | 2 cut(s) | 418, 1265 |
| SmoI | CTYRAG | 2 cut(s) | 418, 1265 |
| SpeI | ACTAGT | 1 cut(s) | 1628 |
| SphI | GCATGC | 1 cut(s) | 725 |
| SsiI | CCGC | 3 cut(s) | 105, 585, 1520 |
| SspMI | CTAG | 2 cut(s) | 1596, 1629 |
| StyD4I | CCNGG | 5 cut(s) | 177, 237, 547, 709, 1283 |
| StyI | CCWWGG | 3 cut(s) | 940, 1000, 1018 |
| TaaI | ACNGT | 7 cut(s) | 164, 379, 835, 860, 1216, 1374, 1586 |
| TaiI | ACGT | 4 cut(s) | 63, 144, 463, 1156 |
| TaqI | TCGA | 2 cut(s) | 147, 1666 |
| TaqII | GACCGA | 1 cut(s) | 940 |
| TatI | WGTACW | 2 cut(s) | 645, 1383 |
| TauI | GCSGC | 1 cut(s) | 107 |
| TfiI | GAWTC | 5 cut(s) | 29, 65, 610, 1543, 1564 |
| Tru1I | TTAA | 2 cut(s) | 729, 1346 |
| Tru9I | TTAA | 2 cut(s) | 729, 1346 |
| TscAI | CASTG | 2 cut(s) | 382, 865 |
| TseFI | GTSAC | 2 cut(s) | 1522, 1586 |
| TseI | GCWGC | 3 cut(s) | 287, 590, 1064 |
| Tsp45I | GTSAC | 2 cut(s) | 1522, 1586 |
| TspGWI | ACGGA | 2 cut(s) | 815, 1350 |
| TspRI | CASTG | 2 cut(s) | 382, 865 |
| VpaK11BI | GGWCC | 1 cut(s) | 545 |
| XapI | RAATTY | 4 cut(s) | 977, 1120, 1481, 1490 |
| XceI | RCATGY | 2 cut(s) | 725, 963 |
| XmnI | GAANNNNTTC | 2 cut(s) | 453, 1419 |
| XspI | CTAG | 2 cut(s) | 1596, 1629 |
| ZrmI | AGTACT | 2 cut(s) | 647, 1385 |