AT2G31990

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012934
Physical Location & Seq
Reverse (-)
13611300 .. 13613728
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31990.2

Sequence Viewer

Length: 1440 bp
ATGAAGAACAACAACAGTTCATCAGTTTCAATCGAGAATCATCCATGGAAGAAAAAACCAACCACTCTTTTACTTTTCCTTTCTCTTCTCTCCATCTCTCTGCTTCTCCTTCGTCTCTCCCAAGACAAAATCATACTCATCACCACCACCAAAACCACAGCCACCACTGGAACCGATCATCAACGCAGTCACAAATCTTCTGAGGACGATACGTGTCTCGGACGCTACATATATATCCACAATCTACCTTCTCGATTCAATCTTGAAATCATCAAAGATTGTAAGTCTATTACAAGACCAAAGGACAAAATCAGTATGTGTAAGTATCTCGACAACTCCGGATTCGGACCTTTGATCGGCGGTAAAAGTTCTGACTACTCTCCGAGCTGGTACGCTACTAATCAGTTCATGCTCGAAGTGATTTTTCACGAGAAAATGAAGAGTTACGAGTGCTTGACGAGAAATTCTTCACTGGCTTCAGCTATTTACGTACCTTATTATGCTGGCCTCGATTTCCGGCGACATTTACGGCGGCGTAACGTTGCTGCGAGAGACGCCGCCGGGAAGGAACTTGTTAAATGGCTCAAGAAGCAACCTCAGTGGAAAGATATGTCAGGTAAAAACCATTTCCTTGTAACCGGTCGGATTTCACGAGATTTCCGGCGAAACTCCGGCAGTAGGTCAGCATGGGGAACCAACTTCATGCTCTTATCTGAGTCGCTAAACCTCACTTTCCTCAGCATTGAACGAAGTCTAACGAGCCACAACGAGTTCGCAATTCCTTATCCTACTTACTTTCACCCTACGTCAACCCCCGAGATCCTTCAGTGGCAAGAAAAGATCAGGCTTACAAACCGGACGGTCCTCTTCTCATTTGCCGGAGCTCAAAGACCAAGCAGAAACCAGAACGGTGTGGTTCGCACTGAAGTTATAAAACAATGCAAGAGTTCATCTAAAACGTGTAGGTTTCTTGACTGTGACGTCAATGCAAATAGCTGTGATGATCCGATCAGTCTGATGAAACTTTTCGAGAGTTCGACTTTCTGCTTACAACCGCCGGGTGATTCGTTGACCAGAAAATCGGTATTTGATTCAATCTTGGCTGGTTGTATACCGGTTTTCTTTAACCAAGGAAGTGCATACAAGCAATATTTATGGCACATACCTAAGAATAGTAGCAAATATTCTGTTTATATAACGGTTAAGGAGCTGAGAACCGGTGGAAAGAACAAAATCGAAGAGATTTTGCGTGGAATACCAAATGAGAGAGTGGTTGGTATGAGAGAAAACGTAATAAGATTGATTCCGAAGATTGTGTATGCTAAACCAAACCGGAACAAACCGGATGGAGAGATTCTTGAAGATTCTTTTGATGTTGCTGTGAAGGGAGTGCTAGAGAGAATAGAAGGGATAAGGAGAAACGAATTCAAAACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

479

Amino Acids

54.79

Weight (kDa)

9.65

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 119 - 452 6.2e-76 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63450 AT2G31990 AT2G31990 AT2G31990 AT2G32740 AT5G41250
fragaria_vesca FvH4_5g02120
malus_domestica MD06G1081200.v1.1 MD14G1103100.v1.1
prunus_persica Prupe.5G098300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198011
rosa_laevigata RLG00000003893
rosa_multiflora Rmu_co8320403.1_g000001 Rmu_sc0000221.1_g000033 Rmu_sc0001082.1_g000001
rosa_rugosa Rorug07G0045300
rosa_samantha Rh7CG178300
rosa_wichuraiana Rw7G014750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 932
AasI GACNNNNNNGTC 1 cut(s) 980
AatII GACGTC 1 cut(s) 984
AccI GTMKAC 1 cut(s) 1111
AccIII TCCGGA 1 cut(s) 338
AciI CCGC 4 cut(s) 360, 532, 558, 1055
AclI AACGTT 1 cut(s) 540
AclWI GGATC 2 cut(s) 814, 998
AcsI RAATTY 2 cut(s) 463, 1424
AcuI CTGAAG 3 cut(s) 462, 809, 945
AcyI GRCGYC 2 cut(s) 555, 981
AfaI GTAC 2 cut(s) 392, 492
AfiI CCNNNNNNNGG 2 cut(s) 356, 678
AflIII ACRYGT 2 cut(s) 212, 959
AgeI ACCGGT 3 cut(s) 638, 1114, 1217
AgsI TTSAA 7 cut(s) 30, 259, 266, 746, 1095, 1361, 1429
AluBI AGCT 5 cut(s) 387, 482, 884, 996, 1210
AluI AGCT 5 cut(s) 387, 482, 884, 996, 1210
Alw21I GWGCWC 1 cut(s) 886
Alw26I GTCTC 3 cut(s) 119, 221, 546
AlwI GGATC 2 cut(s) 814, 998
Ama87I CYCGRG 1 cut(s) 815
Aor13HI TCCGGA 1 cut(s) 338
AoxI GGCC 1 cut(s) 505
ApeKI GCWGC 1 cut(s) 545
ApoI RAATTY 2 cut(s) 463, 1424
AsiGI ACCGGT 3 cut(s) 638, 1114, 1217
Asp700I GAANNNNTTC 2 cut(s) 466, 1025
AspS9I GGNCC 2 cut(s) 347, 862
AsuC2I CCSGG 2 cut(s) 562, 1059
AsuHPI GGTGA 3 cut(s) 133, 791, 1073
AvaI CYCGRG 1 cut(s) 815
AvaII GGWCC 2 cut(s) 347, 862
BanII GRGCYC 1 cut(s) 886
BauI CACGAG 2 cut(s) 428, 651
Bbv12I GWGCWC 1 cut(s) 886
BbvCI CCTCAGC 1 cut(s) 737
BbvI GCAGC 1 cut(s) 532
BccI CCATC 2 cut(s) 101, 1340
BceAI ACGGC 1 cut(s) 545
BcnI CCSGG 2 cut(s) 562, 1059
BcoDI GTCTC 3 cut(s) 119, 221, 546
BfaI CTAG 1 cut(s) 1394
BisI GCNGC 3 cut(s) 533, 546, 558
BlsI GCNGC 3 cut(s) 534, 547, 559
Bme1390I CCNGG 2 cut(s) 562, 1059
Bme18I GGWCC 2 cut(s) 347, 862
BmeT110I CYCGRG 1 cut(s) 815
BmgT120I GGNCC 2 cut(s) 347, 862
BmiI GGNNCC 2 cut(s) 172, 694
BmrFI CCNGG 2 cut(s) 562, 1059
Bpu10I CCTNAGC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 2 cut(s) 562, 1059
BsaAI YACGTR 2 cut(s) 213, 490
BsaHI GRCGYC 2 cut(s) 555, 981
BsaJI CCNNGG 2 cut(s) 44, 1129
BsaWI WCCGGW 7 cut(s) 338, 638, 855, 1114, 1217, 1332, 1342
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 678
Bse118I RCCGGY 3 cut(s) 638, 1114, 1217
Bse1I ACTGG 2 cut(s) 172, 477
BseAI TCCGGA 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 44, 1129
BseGI GGATG 2 cut(s) 40, 1351
BseLI CCNNNNNNNGG 2 cut(s) 356, 678
BseMII CTCAG 5 cut(s) 192, 611, 705, 751, 1202
BseNI ACTGG 2 cut(s) 172, 477
BseXI GCAGC 1 cut(s) 532
Bsh1285I CGRYCG 1 cut(s) 643
BshFI GGCC 1 cut(s) 507
BshTI ACCGGT 3 cut(s) 638, 1114, 1217
BsiEI CGRYCG 1 cut(s) 643
BsiHKAI GWGCWC 1 cut(s) 886
BsiHKCI CYCGRG 1 cut(s) 815
BslI CCNNNNNNNGG 2 cut(s) 356, 678
BsmAI GTCTC 3 cut(s) 119, 221, 546
BsmBI CGTCTC 2 cut(s) 119, 546
BsnI GGCC 1 cut(s) 507
BsoBI CYCGRG 1 cut(s) 815
Bsp1286I GDGCHC 1 cut(s) 886
Bsp13I TCCGGA 1 cut(s) 338
Bsp143I GATC 6 cut(s) 175, 354, 819, 840, 1003, 1008
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 4 cut(s) 360, 532, 558, 1055
BspANI GGCC 1 cut(s) 507
BspCNI CTCAG 5 cut(s) 193, 610, 706, 750, 1203
BspEI TCCGGA 1 cut(s) 338
BspLI GGNNCC 2 cut(s) 172, 694
BspPI GGATC 2 cut(s) 814, 998
BsrFI RCCGGY 3 cut(s) 638, 1114, 1217
BsrI ACTGG 2 cut(s) 172, 477
BssAI RCCGGY 3 cut(s) 638, 1114, 1217
BssECI CCNNGG 2 cut(s) 44, 1129
BssMI GATC 6 cut(s) 175, 354, 819, 840, 1003, 1008
BssNAI GTATAC 1 cut(s) 1112
BssNI GRCGYC 2 cut(s) 555, 981
BssSI CACGAG 2 cut(s) 428, 651
BssT1I CCWWGG 2 cut(s) 44, 1129
Bst1107I GTATAC 1 cut(s) 1112
Bst2BI CACGAG 2 cut(s) 428, 651
Bst4CI ACNGT 5 cut(s) 17, 862, 911, 977, 1201
Bst6I CTCTTC 4 cut(s) 90, 434, 872, 1233
BstACI GRCGYC 2 cut(s) 555, 981
BstBAI YACGTR 2 cut(s) 213, 490
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 6 cut(s) 201, 597, 714, 737, 1167, 1211
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 40, 1351
BstKTI GATC 6 cut(s) 178, 357, 822, 843, 1006, 1011
BstMAI GTCTC 3 cut(s) 119, 221, 546
BstMBI GATC 6 cut(s) 175, 354, 819, 840, 1003, 1008
BstMCI CGRYCG 1 cut(s) 643
BstMWI GCNNNNNNNGC 2 cut(s) 554, 589
BstSCI CCNGG 2 cut(s) 560, 1057
BstSNI TACGTA 1 cut(s) 490
BstV1I GCAGC 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 819
BstYI RGATCY 1 cut(s) 819
BstZ17I GTATAC 1 cut(s) 1112
BsuRI GGCC 1 cut(s) 507
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 2 cut(s) 40, 1351
BtsIMutI CAGTG 5 cut(s) 165, 470, 605, 833, 921
Cac8I GCNNGC 1 cut(s) 505
Cfr10I RCCGGY 3 cut(s) 638, 1114, 1217
Cfr13I GGNCC 2 cut(s) 347, 862
CseI GACGC 2 cut(s) 231, 563
Csp6I GTAC 2 cut(s) 391, 491
CspAI ACCGGT 3 cut(s) 638, 1114, 1217
CspCI CAANNNNNGTGG 2 cut(s) 581, 616
CviAII CATG 4 cut(s) 45, 409, 687, 703
CviQI GTAC 2 cut(s) 391, 491
DdeI CTNAG 6 cut(s) 201, 597, 714, 737, 1167, 1211
DpnI GATC 6 cut(s) 177, 356, 821, 842, 1005, 1010
DpnII GATC 6 cut(s) 175, 354, 819, 840, 1003, 1008
DrdI GACNNNNNNGTC 1 cut(s) 980
DseDI GACNNNNNNGTC 1 cut(s) 980
Eam1104I CTCTTC 4 cut(s) 90, 434, 872, 1233
EarI CTCTTC 4 cut(s) 90, 434, 872, 1233
Ecl136II GAGCTC 1 cut(s) 884
Eco105I TACGTA 1 cut(s) 490
Eco130I CCWWGG 2 cut(s) 44, 1129
Eco24I GRGCYC 1 cut(s) 886
Eco47I GGWCC 2 cut(s) 347, 862
Eco53kI GAGCTC 1 cut(s) 884
Eco57I CTGAAG 3 cut(s) 462, 809, 945
Eco88I CYCGRG 1 cut(s) 815
EcoICRI GAGCTC 1 cut(s) 884
EcoRI GAATTC 1 cut(s) 1424
EcoT14I CCWWGG 2 cut(s) 44, 1129
EcoT38I GRGCYC 1 cut(s) 886
ErhI CCWWGG 2 cut(s) 44, 1129
Esp3I CGTCTC 2 cut(s) 119, 546
FaeI CATG 4 cut(s) 48, 412, 690, 706
FatI CATG 4 cut(s) 44, 408, 686, 702
FblI GTMKAC 1 cut(s) 1111
Fnu4HI GCNGC 3 cut(s) 533, 546, 558
FokI GGATG 2 cut(s) 27, 1358
FriOI GRGCYC 1 cut(s) 886
Fsp4HI GCNGC 3 cut(s) 533, 546, 558
FspBI CTAG 1 cut(s) 1394
GluI GCNGC 3 cut(s) 533, 546, 558
HaeIII GGCC 1 cut(s) 507
HgaI GACGC 2 cut(s) 231, 563
Hin1I GRCGYC 2 cut(s) 555, 981
Hin1II CATG 4 cut(s) 48, 412, 690, 706
HincII GTYRAC 2 cut(s) 810, 1071
HindII GTYRAC 2 cut(s) 810, 1071
HinfI GANTC 9 cut(s) 37, 255, 342, 716, 1064, 1091, 1303, 1354, 1364
HphI GGTGA 3 cut(s) 133, 791, 1073
Hpy166II GTNNAC 3 cut(s) 810, 1071, 1112
Hpy8I GTNNAC 3 cut(s) 810, 1071, 1112
HpyAV CCTTC 6 cut(s) 119, 258, 559, 833, 1378, 1400
HpyCH4III ACNGT 5 cut(s) 17, 862, 911, 977, 1201
HpyCH4IV ACGT 7 cut(s) 212, 489, 540, 806, 959, 981, 1290
HpyCH4V TGCA 3 cut(s) 942, 989, 1139
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 589
HpyF3I CTNAG 6 cut(s) 201, 597, 714, 737, 1167, 1211
HpySE526I ACGT 7 cut(s) 212, 489, 540, 806, 959, 981, 1290
Hsp92I GRCGYC 2 cut(s) 555, 981
Hsp92II CATG 4 cut(s) 48, 412, 690, 706
Kpn2I TCCGGA 1 cut(s) 338
Kzo9I GATC 6 cut(s) 175, 354, 819, 840, 1003, 1008
LmnI GCTCC 2 cut(s) 881, 1207
Lsp1109I GCAGC 1 cut(s) 532
MaeI CTAG 1 cut(s) 1394
MaeII ACGT 7 cut(s) 212, 489, 540, 806, 959, 981, 1290
MaeIII GTNAC 5 cut(s) 188, 443, 536, 634, 977
MalI GATC 6 cut(s) 177, 356, 821, 842, 1005, 1010
MboI GATC 6 cut(s) 175, 354, 819, 840, 1003, 1008
MflI RGATCY 1 cut(s) 819
MhlI GDGCHC 1 cut(s) 886
MluCI AATT 3 cut(s) 463, 777, 1424
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 1 cut(s) 623
MnlI CCTC 6 cut(s) 196, 518, 606, 737, 746, 875
MroI TCCGGA 1 cut(s) 338
MroXI GAANNNNTTC 2 cut(s) 466, 1025
MseI TTAA 3 cut(s) 576, 1125, 1203
MspR9I CCNGG 2 cut(s) 562, 1059
MwoI GCNNNNNNNGC 2 cut(s) 554, 589
NciI CCSGG 2 cut(s) 562, 1059
NcoI CCATGG 1 cut(s) 44
NdeII GATC 6 cut(s) 175, 354, 819, 840, 1003, 1008
NlaIII CATG 4 cut(s) 48, 412, 690, 706
NlaIV GGNNCC 2 cut(s) 172, 694
NmuCI GTSAC 2 cut(s) 188, 977
PcsI WCGNNNNNNNCGW 1 cut(s) 649
PdmI GAANNNNTTC 2 cut(s) 466, 1025
PfeI GAWTC 8 cut(s) 37, 255, 342, 1064, 1091, 1303, 1354, 1364
PinAI ACCGGT 3 cut(s) 638, 1114, 1217
PkrI GCNGC 3 cut(s) 534, 547, 559
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
Ppu21I YACGTR 2 cut(s) 213, 490
PsiI TTATAA 1 cut(s) 932
Psp124BI GAGCTC 1 cut(s) 886
Psp1406I AACGTT 1 cut(s) 540
PspN4I GGNNCC 2 cut(s) 172, 694
PspPI GGNCC 2 cut(s) 347, 862
PsuI RGATCY 1 cut(s) 819
RsaI GTAC 2 cut(s) 392, 492
RsaNI GTAC 2 cut(s) 391, 491
SacI GAGCTC 1 cut(s) 886
SaqAI TTAA 3 cut(s) 576, 1125, 1203
SatI GCNGC 3 cut(s) 533, 546, 558
Sau3AI GATC 6 cut(s) 175, 354, 819, 840, 1003, 1008
Sau96I GGNCC 2 cut(s) 347, 862
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 2 cut(s) 562, 1059
SduI GDGCHC 1 cut(s) 886
SinI GGWCC 2 cut(s) 347, 862
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
SnaBI TACGTA 1 cut(s) 490
Sse9I AATT 3 cut(s) 463, 777, 1424
SsiI CCGC 4 cut(s) 360, 532, 558, 1055
SspI AATATT 2 cut(s) 1151, 1184
SspMI CTAG 1 cut(s) 1394
SstI GAGCTC 1 cut(s) 886
StyD4I CCNGG 2 cut(s) 560, 1057
StyI CCWWGG 2 cut(s) 44, 1129
TaaI ACNGT 5 cut(s) 17, 862, 911, 977, 1201
TaiI ACGT 7 cut(s) 215, 492, 543, 809, 962, 984, 1293
TaqI TCGA 8 cut(s) 33, 253, 330, 414, 510, 1029, 1037, 1236
TasI AATT 3 cut(s) 463, 777, 1424
TauI GCSGC 2 cut(s) 535, 560
TfiI GAWTC 8 cut(s) 37, 255, 342, 1064, 1091, 1303, 1354, 1364
Tru1I TTAA 3 cut(s) 576, 1125, 1203
Tru9I TTAA 3 cut(s) 576, 1125, 1203
TscAI CASTG 5 cut(s) 172, 477, 605, 833, 928
TseFI GTSAC 2 cut(s) 188, 977
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 2 cut(s) 188, 977
TspDTI ATGAA 7 cut(s) 9, 17, 397, 452, 691, 939, 1034
TspRI CASTG 5 cut(s) 172, 477, 605, 833, 928
VpaK11BI GGWCC 2 cut(s) 347, 862
XapI RAATTY 2 cut(s) 463, 1424
XmiI GTMKAC 1 cut(s) 1111
XmnI GAANNNNTTC 2 cut(s) 466, 1025
XspI CTAG 1 cut(s) 1394
ZraI GACGTC 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.