Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8320403.1

Orthogroup ID

OG0012934

Physical Location & Seq

Genomic Coordinates Reverse (-)

209 .. 901

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8320403.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgcaaaatccaatcaagctcttgatcgagagacaaccatggcaaccaaatgacattggaatcccacatccaacattcttccatccgaattcagacgaagacatcatggcattgcaatggaagatcattagctcatatagaaaaaagctagtgagcttcgctggtgcagcaaggcctggtgcagctgaaagcataaggtccatactgatcaaccagtgcaacacagccgaaaatgggaaatgtcactttctcaactgtggttcaggtggttgtgatcagccagaaatggtcactgagcttttcatggagtctgaattctgcttgcagcctccaggagatagcccaactcgaaagtccttattcgattccttaatttcaggttgtattcctgtgattttcgatcctttcacagcttactatcagtatccatggcatctcccagaggaacatggaaagtattctgtgtttgtagaccaagaagatgtgaggggaatgaaggtgaatgtggtggaaatgcttatgaagatttctaaggaaaagagggatgatatgaggaggcacattgtgtatgagttgttgcctggtttggtttatggggattcaaatgccaagtttgacaagtttcaggatgcattttcgattacaatgagaaatctgatggagagggtcaccaaattggatttagctgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0042546 GO:0043170 GO:0044085 GO:0044238 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

230

Amino Acids

26.3

Weight (kDa)

5.7

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63450 AT2G31990 AT2G31990 AT2G31990 AT2G32740 AT5G41250
fragaria_vesca	FvH4_5g02120
malus_domestica	MD06G1081200.v1.1 MD14G1103100.v1.1
prunus_persica	Prupe.5G098300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0198011
rosa_laevigata	RLG00000003893
rosa_multiflora	Rmu_co8320403.1_g000001 Rmu_sc0000221.1_g000033 Rmu_sc0001082.1_g000001
rosa_rugosa	Rorug07G0045300
rosa_samantha	Rh7CG178300
rosa_wichuraiana	Rw7G014750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	471
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	2 cut(s)	88, 314
AdeI	CACNNNGTG	1 cut(s)	565
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	603
AjnI	CCWGG	3 cut(s)	175, 331, 580
AluBI	AGCT	8 cut(s)	19, 132, 148, 156, 185, 298, 413, 686
AluI	AGCT	8 cut(s)	19, 132, 148, 156, 185, 298, 413, 686
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	167, 182, 325
ApoI	RAATTY	2 cut(s)	88, 314
Asp700I	GAANNNNTTC	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	511, 661
AvaII	GGWCC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	179, 194, 337
BccI	CCATC	2 cut(s)	90, 652
BciT130I	CCWGG	3 cut(s)	177, 333, 582
BciVI	GTATCC	1 cut(s)	435
BclI	TGATCA	2 cut(s)	207, 274
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	3 cut(s)	168, 183, 326
BlsI	GCNGC	3 cut(s)	169, 184, 327
Bme1390I	CCNGG	3 cut(s)	177, 333, 582
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	198
BmrFI	CCNGG	3 cut(s)	177, 333, 582
BmsI	GCATC	2 cut(s)	442, 619
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	38, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	2 cut(s)	110, 122
BseBI	CCWGG	3 cut(s)	177, 333, 582
BseDI	CCNNGG	2 cut(s)	38, 428
BseGI	GGATG	4 cut(s)	67, 82, 550, 634
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	2 cut(s)	110, 122
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	568
BseXI	GCAGC	3 cut(s)	179, 194, 337
BsgI	GTGCAG	2 cut(s)	186, 201
BshFI	GGCC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	24, 123, 207, 274, 400
Bsp19I	CCATGG	2 cut(s)	38, 428
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	286
BspPI	GGATC	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	110, 122
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	38, 428
BssMI	GATC	5 cut(s)	24, 123, 207, 274, 400
BssT1I	CCWWGG	2 cut(s)	38, 428
Bst2UI	CCWGG	3 cut(s)	177, 333, 582
Bst4CI	ACNGT	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	2 cut(s)	294, 531
BstDSI	CCRYGG	2 cut(s)	38, 428
BstEII	GGTNACC	1 cut(s)	667
BstF5I	GGATG	4 cut(s)	67, 82, 550, 634
BstKTI	GATC	5 cut(s)	27, 126, 210, 277, 403
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	5 cut(s)	24, 123, 207, 274, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	3 cut(s)	177, 333, 582
BstPI	GGTNACC	1 cut(s)	667
BstSCI	CCNGG	3 cut(s)	175, 331, 580
BstV1I	GCAGC	3 cut(s)	179, 194, 337
BstV2I	GAAGAC	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	2 cut(s)	38, 428
BtsCI	GGATG	4 cut(s)	67, 82, 550, 634
BtsIMutI	CAGTG	2 cut(s)	221, 291
Cac8I	GCNNGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	198
CviAII	CATG	5 cut(s)	39, 106, 304, 429, 449
DdeI	CTNAG	2 cut(s)	294, 531
DpnI	GATC	5 cut(s)	26, 125, 209, 276, 402
DpnII	GATC	5 cut(s)	24, 123, 207, 274, 400
DraIII	CACNNNGTG	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	38, 428
Eco147I	AGGCCT	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	667
EcoO65I	GGTNACC	1 cut(s)	667
EcoRI	GAATTC	2 cut(s)	88, 314
EcoRII	CCWGG	3 cut(s)	175, 331, 580
EcoT14I	CCWWGG	2 cut(s)	38, 428
EcoT22I	ATGCAT	1 cut(s)	634
ErhI	CCWWGG	2 cut(s)	38, 428
FaeI	CATG	5 cut(s)	42, 109, 307, 432, 452
FatI	CATG	5 cut(s)	38, 105, 303, 428, 448
FbaI	TGATCA	2 cut(s)	207, 274
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	3 cut(s)	168, 183, 326
FokI	GGATG	4 cut(s)	54, 69, 557, 641
Fsp4HI	GCNGC	3 cut(s)	168, 183, 326
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	3 cut(s)	168, 183, 326
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	175
Hin1II	CATG	5 cut(s)	42, 109, 307, 432, 452
HinfI	GANTC	4 cut(s)	60, 308, 365, 599
HphI	GGTGA	2 cut(s)	511, 661
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	4 cut(s)	87, 94, 313, 657
Hpy188III	TCNNGA	3 cut(s)	22, 28, 626
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	7 cut(s)	4, 115, 167, 182, 219, 325, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	294, 531
Hsp92II	CATG	5 cut(s)	42, 109, 307, 432, 452
Ksp22I	TGATCA	2 cut(s)	207, 274
Kzo9I	GATC	5 cut(s)	24, 123, 207, 274, 400
Lsp1109I	GCAGC	3 cut(s)	179, 194, 337
LweI	GCATC	2 cut(s)	442, 619
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	3 cut(s)	242, 289, 667
MalI	GATC	5 cut(s)	26, 125, 209, 276, 402
MboI	GATC	5 cut(s)	24, 123, 207, 274, 400
MboII	GAAGA	5 cut(s)	70, 110, 133, 491, 535
MluCI	AATT	4 cut(s)	88, 314, 372, 674
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	7 cut(s)	339, 436, 480, 534, 546, 549, 657
Mph1103I	ATGCAT	1 cut(s)	634
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	177, 333, 582
MvaI	CCWGG	3 cut(s)	177, 333, 582
MwoI	GCNNNNNNNGC	1 cut(s)	167
NcoI	CCATGG	2 cut(s)	38, 428
NdeII	GATC	5 cut(s)	24, 123, 207, 274, 400
NlaIII	CATG	5 cut(s)	42, 109, 307, 432, 452
NmuCI	GTSAC	3 cut(s)	242, 289, 667
NsiI	ATGCAT	1 cut(s)	634
PceI	AGGCCT	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	60, 365, 599
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	169, 184, 327
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp6I	CCWGG	3 cut(s)	175, 331, 580
PspEI	GGTNACC	1 cut(s)	667
PspGI	CCWGG	3 cut(s)	175, 331, 580
PspPI	GGNCC	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	3 cut(s)	168, 183, 326
Sau3AI	GATC	5 cut(s)	24, 123, 207, 274, 400
Sau96I	GGNCC	1 cut(s)	198
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	177, 333, 582
SfaNI	GCATC	2 cut(s)	442, 619
SinI	GGWCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	115
Sse9I	AATT	4 cut(s)	88, 314, 372, 674
SseBI	AGGCCT	1 cut(s)	175
SspMI	CTAG	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	3 cut(s)	175, 331, 580
StyI	CCWWGG	2 cut(s)	38, 428
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	5 cut(s)	27, 349, 363, 399, 638
TasI	AATT	4 cut(s)	88, 314, 372, 674
TfiI	GAWTC	3 cut(s)	60, 365, 599
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	221, 298
TseFI	GTSAC	3 cut(s)	242, 289, 667
TseI	GCWGC	3 cut(s)	167, 182, 325
Tsp45I	GTSAC	3 cut(s)	242, 289, 667
TspDTI	ATGAA	3 cut(s)	292, 509, 536
TspRI	CASTG	2 cut(s)	221, 298
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	2 cut(s)	88, 314
XmiI	GTMKAC	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.