AT5G41250

Xyloglucan galactosyltransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
16501217 .. 16502902
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41250.1

Sequence Viewer

Length: 1686 bp
ATGGTTTCAAAGAGAAAGTCAAGAACTTCAAAGACTATAGAAGATTCTTGTATCCATCTATGTTCTGTCTTCTTCAGATTCTTGTACTATACTCTTCCTGCATTATTTCTCTTCTTCTTTCTTCTTTATCTTTGTTTATCTTTCACCACCGGAATCTCCTACAACAACTTCCATATGTGTATCTTCTCTCGAAAGTTCAACGACCCTTATTGTAACACGGCTGGTTCTAAACCCGGTTTCCAAATAATTTCTGAAGAAAATGTAACTTTCGCCGGAGAGATCGCAGGAGATAGAGTTTCTAAGGATCACAACAAGATTCTTAATTCAGTTCCTGTTCAAGAACACAAAACAAAGAACAAGGTTGATCTCAATTCACTCATTGAACTAAAAGCCGAGGAAGAATACAGCAAATACATCAAACCTACGAGTGAAGATGAGGGATATGCGTTAAGGGCAGCCATCAAGTATCTTTACCTACAAAGATCATGGCTATCTCCGGGAGATGAAAACCTCAATAAACCGCGATCGTGTGAAGGTAAAGGAGTTTACGTTTATGATTTACCGTCAAAATTCAACAGCGATTTGTTGGTAGGATGCAACGATATACTTCCAGGGGTTAACTTGTGTAGCTACTTCAAGAATGAAGGCTTTGGAGAAGCTATTAAGAATCTTGGCAAAGGTTGGTTTGCTACACACATGTATTCTCTTGAGCCCATCTTACACTCTAGGGTTTTGAAGCATCCTTGTAGGGTTTACAACGAGACCCAAGCTAAGCTCTTCTTTGTCCCTTACTATGGCGGGTATGATGTTTTGAGATGGCACTATAGGAATGTTTCTGAAGATGTGAAGGACCGTTTGGGGATCGAGGTTTTAAAATGGCTTAATTCAAAGGAATCATGGAGGAGAAACGCCGGGAAAGATCATGTGTTCGTTCTAGGAAAAATAACTTGGGATTTTAGGAGAGATAAGGACCCTTGGGGCTCAAGGTTCCTTGAGCTACAAGAAATGCAAAACCCTACCAAGCTACTCATAGAAAGACAGCCATGGCAGGTCAACGACATCGCCATTCCTCACCCAACTTATTTCCATCCGCGAACAGATGATGATATCACCCGCTGGCAGATCAAGATCATGAGTAAACTTCGCCGGAATCTAGTAAGCTTCGCGGGAGGTGCAAGACCCGATAACCCTAATAACATCCGATCAACGCTAATCGAGCAATGCATATCTTCCAACCAATGTCGGTTCTTAAATTGTACAAACGAAAGCTGCACGAATCCCAAGAATGTCCTTGATTTGTTTCAAGATTCAGAGTTTTGTCTGCAGCCGCCTGGAGATAGTGCAACAAGGAGATCAGTATTTGATTCACTAATCTCCGGCTGCATTCCGGTGATCTTTACTCCGTACACAGCTTATTACCAGTACGCGTGGCATCTTCCTGAGGATCATCGGAAGTACTCAGTGTATATAAGCGAACAAGATGTGAAGGAAAAGAGAGTAAATGTGGTGGAGATATTGAAGGCAAAGACTCTAAAGGAGAAAAAGGATATGAAAAGTTACATAGTTCAACAGCTTTTGCCTGGATTGGTATATGGAGACTCCAATGCTAAGTTTGAAAAGTTTCGAGATGCTTTTGATATTACTTTTGATTGTTTACTTAAGAAAATCAACAGGTCAGTGGTATAA

Protein Analysis

561

Amino Acids

65.21

Weight (kDa)

8.83

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 177 - 504 1.4e-87 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012934)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1039
AccII CGCG 4 cut(s) 523, 1093, 1166, 1427
AciI CCGC 6 cut(s) 521, 798, 1091, 1114, 1166, 1328
AclWI GGATC 3 cut(s) 312, 869, 1452
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 3 cut(s) 58, 273, 858
AfaI GTAC 5 cut(s) 86, 1258, 1406, 1424, 1457
AfiI CCNNNNNNNGG 1 cut(s) 794
AflII CTTAAG 1 cut(s) 1658
AflIII ACRYGT 2 cut(s) 696, 1425
AjnI CCWGG 3 cut(s) 610, 1330, 1579
AjuI GAANNNNNNNTTGG 4 cut(s) 839, 871, 931, 963
Alw26I GTCTC 2 cut(s) 755, 1590
AlwI GGATC 3 cut(s) 312, 869, 1452
AlwNI CAGNNNCTG 1 cut(s) 332
ApeKI GCWGC 4 cut(s) 455, 1269, 1324, 1380
ApoI RAATTY 1 cut(s) 569
ArsI GACNNNNNNTTYG 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 1620
AspS9I GGNCC 2 cut(s) 850, 970
AsuC2I CCSGG 3 cut(s) 234, 498, 913
AsuHPI GGTGA 4 cut(s) 136, 1064, 1102, 1402
AvaII GGWCC 2 cut(s) 850, 970
AxyI CCTNAGG 1 cut(s) 1440
BanII GRGCYC 2 cut(s) 714, 983
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 4 cut(s) 467, 1256, 1336, 1367
BccI CCATC 5 cut(s) 63, 467, 722, 810, 1095
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 3 cut(s) 612, 1332, 1581
BciVI GTATCC 1 cut(s) 62
BcnI CCSGG 3 cut(s) 234, 498, 913
BcoDI GTCTC 2 cut(s) 755, 1590
BfaI CTAG 3 cut(s) 726, 935, 1154
BfmI CTRYAG 3 cut(s) 36, 823, 1322
BfrI CTTAAG 1 cut(s) 1658
BfuAI ACCTGC 1 cut(s) 1039
BfuI GTATCC 1 cut(s) 62
BisI GCNGC 5 cut(s) 456, 1270, 1325, 1328, 1381
BlpI GCTNAGC 1 cut(s) 771
BlsI GCNGC 5 cut(s) 457, 1271, 1326, 1329, 1382
BmcAI AGTACT 1 cut(s) 1457
Bme1390I CCNGG 6 cut(s) 234, 498, 612, 913, 1332, 1581
Bme18I GGWCC 2 cut(s) 850, 970
BmgT120I GGNCC 2 cut(s) 850, 970
BmiI GGNNCC 2 cut(s) 972, 989
BmrFI CCNGG 6 cut(s) 234, 498, 612, 913, 1332, 1581
BmsI GCATC 4 cut(s) 584, 748, 1441, 1618
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 1353
Bpu1102I GCTNAGC 1 cut(s) 771
BpuEI CTTGAG 3 cut(s) 728, 967, 1013
BpuMI CCSGG 3 cut(s) 234, 498, 913
BsaBI GATNNNNATC 1 cut(s) 1127
BsaI GGTCTC 1 cut(s) 755
BsaJI CCNNGG 4 cut(s) 393, 611, 974, 1043
BsaWI WCCGGW 2 cut(s) 149, 1387
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 534, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 794
Bse1I ACTGG 1 cut(s) 1420
Bse21I CCTNAGG 1 cut(s) 1440
Bse3DI GCAATG 1 cut(s) 1226
Bse8I GATNNNNATC 1 cut(s) 1127
BseBI CCWGG 3 cut(s) 612, 1332, 1581
BseDI CCNNGG 4 cut(s) 393, 611, 974, 1043
BseGI GGATG 4 cut(s) 599, 739, 1087, 1197
BseJI GATNNNNATC 1 cut(s) 1127
BseLI CCNNNNNNNGG 1 cut(s) 794
BseMI GCAATG 1 cut(s) 1226
BseMII CTCAG 2 cut(s) 1431, 1473
BseNI ACTGG 1 cut(s) 1420
BseRI GAGGAG 1 cut(s) 916
BseXI GCAGC 4 cut(s) 467, 1256, 1336, 1367
BsgI GTGCAG 1 cut(s) 1255
Bsh1236I CGCG 4 cut(s) 523, 1093, 1166, 1427
Bsh1285I CGRYCG 1 cut(s) 527
BsiEI CGRYCG 1 cut(s) 527
BsiSI CCGG 8 cut(s) 150, 234, 273, 497, 912, 1147, 1377, 1388
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 1 cut(s) 794
BsmAI GTCTC 2 cut(s) 755, 1590
BsmFI GGGAC 1 cut(s) 770
BsmI GAATGC 1 cut(s) 1383
Bso31I GGTCTC 1 cut(s) 755
Bsp1286I GDGCHC 2 cut(s) 714, 983
Bsp1407I TGTACA 1 cut(s) 1256
Bsp1720I GCTNAGC 1 cut(s) 771
Bsp19I CCATGG 1 cut(s) 1043
BspACI CCGC 6 cut(s) 521, 798, 1091, 1114, 1166, 1328
BspCNI CTCAG 2 cut(s) 1432, 1472
BspFNI CGCG 4 cut(s) 523, 1093, 1166, 1427
BspHI TCATGA 1 cut(s) 1131
BspLI GGNNCC 2 cut(s) 972, 989
BspMAI CTGCAG 1 cut(s) 1326
BspMI ACCTGC 1 cut(s) 1039
BspPI GGATC 3 cut(s) 312, 869, 1452
BspQI GCTCTTC 1 cut(s) 782
BspTI CTTAAG 1 cut(s) 1658
BspTNI GGTCTC 1 cut(s) 755
BsrDI GCAATG 1 cut(s) 1226
BsrGI TGTACA 1 cut(s) 1256
BsrI ACTGG 1 cut(s) 1420
BssECI CCNNGG 4 cut(s) 393, 611, 974, 1043
BssT1I CCWWGG 2 cut(s) 974, 1043
Bst2UI CCWGG 3 cut(s) 612, 1332, 1581
Bst4CI ACNGT 2 cut(s) 564, 854
Bst6I CTCTTC 3 cut(s) 99, 116, 782
BstAFI CTTAAG 1 cut(s) 1658
BstAUI TGTACA 1 cut(s) 1256
BstC8I GCNNGC 1 cut(s) 1118
BstDEI CTNAG 5 cut(s) 300, 771, 1440, 1459, 1608
BstDSI CCRYGG 1 cut(s) 1043
BstF5I GGATG 4 cut(s) 599, 739, 1087, 1197
BstFNI CGCG 4 cut(s) 523, 1093, 1166, 1427
BstMAI GTCTC 2 cut(s) 755, 1590
BstMCI CGRYCG 1 cut(s) 527
BstMWI GCNNNNNNNGC 3 cut(s) 452, 1172, 1216
BstNI CCWGG 3 cut(s) 612, 1332, 1581
BstNSI RCATGY 1 cut(s) 700
BstSCI CCNGG 6 cut(s) 232, 496, 610, 911, 1330, 1579
BstSFI CTRYAG 3 cut(s) 36, 823, 1322
BstUI CGCG 4 cut(s) 523, 1093, 1166, 1427
BstV1I GCAGC 4 cut(s) 467, 1256, 1336, 1367
BstV2I GAAGAC 1 cut(s) 61
Bsu36I CCTNAGG 1 cut(s) 1440
BsuI GTATCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 1043
BtgZI GCGATG 1 cut(s) 1045
BtsCI GGATG 4 cut(s) 599, 739, 1087, 1197
BtsIMutI CAGTG 2 cut(s) 1467, 1683
BveI ACCTGC 1 cut(s) 1039
Cac8I GCNNGC 1 cut(s) 1118
CaiI CAGNNNCTG 1 cut(s) 332
CciI TCATGA 1 cut(s) 1131
Cfr13I GGNCC 2 cut(s) 850, 970
Csp6I GTAC 5 cut(s) 85, 1257, 1405, 1423, 1456
CviAII CATG 6 cut(s) 486, 697, 897, 923, 1044, 1132
CviQI GTAC 5 cut(s) 85, 1257, 1405, 1423, 1456
DdeI CTNAG 5 cut(s) 300, 771, 1440, 1459, 1608
DraI TTTAAA 1 cut(s) 873
Eam1104I CTCTTC 3 cut(s) 99, 116, 782
EarI CTCTTC 3 cut(s) 99, 116, 782
Eco130I CCWWGG 2 cut(s) 974, 1043
Eco24I GRGCYC 2 cut(s) 714, 983
Eco31I GGTCTC 1 cut(s) 755
Eco32I GATATC 1 cut(s) 1108
Eco47I GGWCC 2 cut(s) 850, 970
Eco57I CTGAAG 3 cut(s) 58, 273, 858
Eco81I CCTNAGG 1 cut(s) 1440
EcoO109I RGGNCCY 1 cut(s) 970
EcoRII CCWGG 3 cut(s) 610, 1330, 1579
EcoRV GATATC 1 cut(s) 1108
EcoT14I CCWWGG 2 cut(s) 974, 1043
EcoT22I ATGCAT 1 cut(s) 1226
EcoT38I GRGCYC 2 cut(s) 714, 983
ErhI CCWWGG 2 cut(s) 974, 1043
FaeI CATG 6 cut(s) 489, 700, 900, 926, 1047, 1135
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FaqI GGGAC 1 cut(s) 770
FatI CATG 6 cut(s) 485, 696, 896, 922, 1043, 1131
FauI CCCGC 3 cut(s) 791, 1121, 1159
FauNDI CATATG 1 cut(s) 174
Fnu4HI GCNGC 5 cut(s) 456, 1270, 1325, 1328, 1381
FokI GGATG 4 cut(s) 606, 726, 1074, 1184
FriOI GRGCYC 2 cut(s) 714, 983
Fsp4HI GCNGC 5 cut(s) 456, 1270, 1325, 1328, 1381
FspBI CTAG 3 cut(s) 726, 935, 1154
GluI GCNGC 5 cut(s) 456, 1270, 1325, 1328, 1381
GsuI CTGGAG 1 cut(s) 1353
HapII CCGG 8 cut(s) 150, 234, 273, 497, 912, 1147, 1377, 1388
Hin1II CATG 6 cut(s) 489, 700, 900, 926, 1047, 1135
HincII GTYRAC 2 cut(s) 619, 1054
HindII GTYRAC 2 cut(s) 619, 1054
HindIII AAGCTT 1 cut(s) 1159
HpaI GTTAAC 1 cut(s) 619
HpaII CCGG 8 cut(s) 150, 234, 273, 497, 912, 1147, 1377, 1388
HphI GGTGA 4 cut(s) 136, 1064, 1102, 1402
Hpy166II GTNNAC 7 cut(s) 547, 619, 754, 1054, 1139, 1407, 1655
Hpy188I TCNGA 6 cut(s) 77, 253, 838, 1202, 1312, 1452
Hpy8I GTNNAC 7 cut(s) 547, 619, 754, 1054, 1139, 1407, 1655
HpyAV CCTTC 5 cut(s) 527, 638, 841, 1480, 1513
HpyCH4III ACNGT 2 cut(s) 564, 854
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 9 cut(s) 101, 597, 1009, 1175, 1224, 1272, 1324, 1343, 1383
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 1172, 1216
HpyF3I CTNAG 5 cut(s) 300, 771, 1440, 1459, 1608
HpySE526I ACGT 1 cut(s) 549
Hsp92II CATG 6 cut(s) 489, 700, 900, 926, 1047, 1135
KspAI GTTAAC 1 cut(s) 619
LguI GCTCTTC 1 cut(s) 782
Lsp1109I GCAGC 4 cut(s) 467, 1256, 1336, 1367
LweI GCATC 4 cut(s) 584, 748, 1441, 1618
MaeI CTAG 3 cut(s) 726, 935, 1154
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 3 cut(s) 212, 262, 1556
MhlI GDGCHC 2 cut(s) 714, 983
MluCI AATT 6 cut(s) 246, 322, 370, 569, 883, 1252
MluI ACGCGT 1 cut(s) 1425
MlyI GAGTC 2 cut(s) 1522, 1592
MmeI TCCRAC 1 cut(s) 1257
MnlI CCTC 8 cut(s) 388, 430, 521, 859, 894, 1080, 1163, 1435
Mph1103I ATGCAT 1 cut(s) 1226
MroXI GAANNNNTTC 1 cut(s) 1620
MseI TTAA 8 cut(s) 321, 449, 618, 663, 872, 882, 1250, 1659
MslI CAYNNNNRTG 1 cut(s) 1388
MspA1I CMGCKG 1 cut(s) 1116
MspCI CTTAAG 1 cut(s) 1658
MspI CCGG 8 cut(s) 150, 234, 273, 497, 912, 1147, 1377, 1388
MspR9I CCNGG 6 cut(s) 234, 498, 612, 913, 1332, 1581
Mva1269I GAATGC 1 cut(s) 1383
MvaI CCWGG 3 cut(s) 612, 1332, 1581
MvnI CGCG 4 cut(s) 523, 1093, 1166, 1427
MwoI GCNNNNNNNGC 3 cut(s) 452, 1172, 1216
NciI CCSGG 3 cut(s) 234, 498, 913
NcoI CCATGG 1 cut(s) 1043
NdeI CATATG 1 cut(s) 174
NlaIII CATG 6 cut(s) 489, 700, 900, 926, 1047, 1135
NlaIV GGNNCC 2 cut(s) 972, 989
NmeAIII GCCGAG 1 cut(s) 418
NsiI ATGCAT 1 cut(s) 1226
NspI RCATGY 1 cut(s) 700
PagI TCATGA 1 cut(s) 1131
PciI ACATGT 1 cut(s) 696
PciSI GCTCTTC 1 cut(s) 782
PctI GAATGC 1 cut(s) 1383
PdmI GAANNNNTTC 1 cut(s) 1620
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 5 cut(s) 457, 1271, 1326, 1329, 1382
Ple19I CGATCG 1 cut(s) 527
PleI GAGTC 2 cut(s) 1522, 1592
PpsI GAGTC 2 cut(s) 1522, 1592
PpuMI RGGWCCY 1 cut(s) 970
PscI ACATGT 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 970
Psp6I CCWGG 3 cut(s) 610, 1330, 1579
PspGI CCWGG 3 cut(s) 610, 1330, 1579
PspN4I GGNNCC 2 cut(s) 972, 989
PspPI GGNCC 2 cut(s) 850, 970
PspPPI RGGWCCY 1 cut(s) 970
PstI CTGCAG 1 cut(s) 1326
PstNI CAGNNNCTG 1 cut(s) 332
PvuI CGATCG 1 cut(s) 527
RsaI GTAC 5 cut(s) 86, 1258, 1406, 1424, 1457
RsaNI GTAC 5 cut(s) 85, 1257, 1405, 1423, 1456
RseI CAYNNNNRTG 1 cut(s) 1388
SapI GCTCTTC 1 cut(s) 782
SaqAI TTAA 8 cut(s) 321, 449, 618, 663, 872, 882, 1250, 1659
SatI GCNGC 5 cut(s) 456, 1270, 1325, 1328, 1381
Sau96I GGNCC 2 cut(s) 850, 970
ScaI AGTACT 1 cut(s) 1457
SchI GAGTC 2 cut(s) 1522, 1592
ScrFI CCNGG 6 cut(s) 234, 498, 612, 913, 1332, 1581
SduI GDGCHC 2 cut(s) 714, 983
SfaNI GCATC 4 cut(s) 584, 748, 1441, 1618
SfcI CTRYAG 3 cut(s) 36, 823, 1322
SinI GGWCC 2 cut(s) 850, 970
SmiMI CAYNNNNRTG 1 cut(s) 1388
SmlI CTYRAG 4 cut(s) 707, 982, 992, 1658
SmoI CTYRAG 4 cut(s) 707, 982, 992, 1658
Sse9I AATT 6 cut(s) 246, 322, 370, 569, 883, 1252
SsiI CCGC 6 cut(s) 521, 798, 1091, 1114, 1166, 1328
SspMI CTAG 3 cut(s) 726, 935, 1154
StyD4I CCNGG 6 cut(s) 232, 496, 610, 911, 1330, 1579
StyI CCWWGG 2 cut(s) 974, 1043
TaaI ACNGT 2 cut(s) 564, 854
TaiI ACGT 1 cut(s) 552
TaqI TCGA 4 cut(s) 190, 864, 1215, 1624
TasI AATT 6 cut(s) 246, 322, 370, 569, 883, 1252
TatI WGTACW 3 cut(s) 84, 1256, 1455
TauI GCSGC 1 cut(s) 1330
Tru1I TTAA 8 cut(s) 321, 449, 618, 663, 872, 882, 1250, 1659
Tru9I TTAA 8 cut(s) 321, 449, 618, 663, 872, 882, 1250, 1659
TscAI CASTG 2 cut(s) 1467, 1683
TseI GCWGC 4 cut(s) 455, 1269, 1324, 1380
TspDTI ATGAA 3 cut(s) 519, 657, 1565
TspGWI ACGGA 1 cut(s) 1392
TspRI CASTG 2 cut(s) 1467, 1683
Vha464I CTTAAG 1 cut(s) 1658
VpaK11BI GGWCC 2 cut(s) 850, 970
XapI RAATTY 1 cut(s) 569
XceI RCATGY 1 cut(s) 700
XmnI GAANNNNTTC 1 cut(s) 1620
XspI CTAG 3 cut(s) 726, 935, 1154
ZrmI AGTACT 1 cut(s) 1457
Zsp2I ATGCAT 1 cut(s) 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.