Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012934

Physical Location & Seq

Genomic Coordinates Reverse (-)

3302424 .. 3320053

Gene Structure 17630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0045300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4110 bp

ATGTCCACCGAGGCAGAGCCGTCGTCGTCGTCGTCGTCGGGGTTCATGACCGACGGCCCTGATGACGTGGAAGACTACATTTCGGCTAATGAAGGAGAACCGGCATTGCCCTGGGACATATTTAGTCATGTTTTTGATCTTGTGCAGAAGGGAAACCAGGCTTTTCGAGAGAATCGATTTGAGGAGGCAATTAGTTGCTACACAAGAGCCAATAACATTAAACCATGTGACCCTGTTGTTCTTGGCAACCGAACTGCTGCTTATATCAGGATCAGTAAATTCCTTAAACGCATACCAGCATCGGCTTCTGAATATAGAGCACGGACTGGATTGGATCCTACAATACATGCTGAACTTGCTTTAAAAGATGTGGAGAAGCTAATCAACCTCCGAAGTAATTCAGCAAAACCATATATGTTGAAAGCTGAAGCTCTAAGTTTGCTGGAGAAATATGAAATGGCCCGGGATATTATCTTATGCGGTCTTCATGTTGACCCTTTAAGCAATCCTCTTCGGACAGCTCTTCAGAATTTGGAGAGTATACAAGTTAGCGTGATAGGGAAGAGAAGCCATAGCAAACCAGAACGAAAAGCAGAACGCAGTGATGATTTTGATTGCACGTTATGTTTCAAGTTACTCTATGAACCTGTGACAACGCCTTGTGGACATTCCTTTTGTCGATCATGCTTATTTCAGTCAATGGATCGAGGTAACAAATGTCCATTATGCCGAACCGTTCTGTTCATTAGTCCTAGAACATGTGCAATCAGTGTGACACTCAACGACATTATACAAAAGAACTTCCCAGAGGAATTTGCTGAAAGGAAGTCAGAGAATGACACAATGACAAACTTTGGTGCTGATTTGATGCCACTCTTTGTAATGGATGTTGTCCTTCCTTTTCAGAAGTTTCCACTACACATTTTTGAGCCTCGATATAGACTTATGGTGAGGAGGATAATGGAAGGCAACCGTCGGATGGGAATGGTCATCATCGATTCTACAACAGGTTCCGTAGCTGATTTTGCTTGTGAGGTGGAAATTACTGAGTGTGAACCGCTTCCAGATGGGCGTTTCTATTTAGAGATTGAAAGTCGCCGAAGGTTTCACATAATTCGATCTTGGGACCAAGATGGGTACCGAGTTGCAGAGATTGAATGGGTACAGGATATATGCCCACCAGAAGGATCTAGAGAGAGAACAGAATTGCAGGAATTGACGAATAATGCAGCAGAATATGCTCGCTTATGGATAGGGCGGGGTAAAAGAGCAGCAAGTCGAGATCGAAGACGACTTGAGAAACTTCTCAGTGTAGAAGCAATGATGCCATCAGTTCAAGATCCTGAGCGCTTCAGCTTCTGGCTGGCTTCCCTTTCAAACCGACGTCCTCACGAAAGATTGGATCTCTTACGCATGAGAGATACAAAAGAGATAATGGGGAGAGTGACAAATGGTGCATCATCAAATGTTCCTTTACAGCTCTCCCCCCTCTCCTTTCTTTTCCTTCTCTTCCTTTTCACATTCTTCAGCAATCTCATAAACAATGTCTCCGCCAAAGGCCATGCCAATTCTTCGGCTACATTGACATTCACACCTTCTGATAACTTCCTCATCGACTGTGGCGCTCCGCAAGAAGCCAAGCTCCCTGATGGCAGGACATTCAAATCAGACCGCGAAACGGCTGACCTCTTGTCCACAAATGAGGACTTTAAGGCTTCAGCTGACTCCATCAATGCCAATGTCTCTTCATCTGTTCCACCGGATGCAATAGTTCTATTTAAAACGGCGAGGATCTTCTCCGAGGAATCCATGTATACATTCCACATTAACAAGCCCGGCCGCCATTGGATTCGCCTCTACTTCTATCCTCTCCCACACCAGACATACAACCTTTCCGACGCAGTTTTCTCAGTGGACACAGACAAGTATGTTCTCTTGCATGACTTTTCTGCCTCGGACAAAGCCACATTGGTGTTCAAAGAATACCTTCTCAATGTCTCTGACAACAGATTCTCTCTCCATTTCCGACCAAAGAAGCACTCCTTTGCTTTTGTCAATGCCATTGAGGTTGTCTCTGCTCCAGACTCTATTTTCAATGACTCTGCCACCACTGTTCCCGTAGCCGGAGACTTCAGCGGCTTGCAAAACTACGCTTTCCAAGTCCGGTACCGGCTAAATGTGGGAGGGCCATTGGTATCACCTCAAAATGACACATTGTCAAGGACTTGGGAGCCAGACACTCCATACAATGCATTTCCTCAGGGCTCTCAAAACGTGTCAGTTGCTCCGAAAATCGTCAAGTATCTGAAGAGAGGAGATGCCTCCTTGATTGCCCCGAATTCGGTCTATGCAACTGCTCAGCACATGCAGGATTCTTTCACAAGCAACCAGAATTTCAACCTCAGTTGGAAGCTTAGTGTTGAGGAGGACTTTTCCTACTTGATCAGGTTACATTTCTGCGACATTGTGAGCAAGACCCTTGATAACTTGTACTTCAATGTATACATTAATGGCATGATGGCTGTCTCCAATCTTGATCTCTCTTCACTCACCGGCGCGCTATCCACTGCTTTTTACAAAGATTTCGTGCTCAATTCCACAGCGGTCTCCACCTCAAATAACACCATCAACATTCAGATTGGTCCTGGCACTACTCAGTCCGGGACTCATGATGGACTGCTTAATGGAGTGGAGGTCTTGAAATTGAGCAATGTAGCAGAAAGCTTGGATGGATTTTTCGCCGTTGATGGGAAGTACAAGGGTCCGGTGAAATCATCAAACAAAATGAAGATAGTTGCGGGTGTGGGATTGGGAATGGGAGTGACGGCAATGTTCTTAGTTGGCGTTGTTTATATAAGGTGGAAAAGGAGACCTCAAGGTTGGGAAAAGAAAGATAGCTTCTCATCATGGTTGCTTCCTATACATTCCGGTAACTCTAGCTTGTTCTCCAAGTCAAGTAAGTGTACTTCTAGAAGATCAAGCAGCATTTTCGGCTCACGCAAGAGCAAGAGTTACTCAACTTATTTTTCTTCCACTTGCTACGGCCGGTCCTTCACTTTCGCTGAGTTACAAGCTGCAACTCAAAATTGGGATGAGAAGGAGGTGATCGGTGTTGGGGGGTTCGGGAAAGTGTACCTTGGGGTGTTGGAAGATGGTACTAAGCTTGCTATCAAACGAGGGAACCCGAACTCTGAGCAAGGTATTAATGAGTTCAGAACAGAAATGGACATGCTCTCCAAGCTAAGACATCGCCACCTTGTTTCACTGATTGGATTCTGTGATGAGAATAATGAGATGATACTAGTGTATGAGTACATGGCTAATGGACCCCTTCGAGACCACCTCTATGGCTCGAACCTGCTTCCATTGTCATGGAAGCAAAGGCTCGAGGTTTGCATTGGCGCTGCTCGTGGTTTGCATTATCTGCATACTGGTGCAGCACAAGGCATTATCCATCGTGATGTCAAGACGACGAATATCCTCCTGGATGAGAATTTCGTTGCAAAAGTAGCTGACTTTGGACTGTCAAAAGCTGCTCCATCGTTGGAACAAACCCATGTCAGCACAGCCGTGAAGGGAAGTTTTGGTTATCTTGATCCTGAGTACTTCAGGAGGCAGCAGCTTACTGAGAAATCCGATGTGTATTCCTTCGGCGTGGTTCTTTTTGAGGCATTATGTGCAAGGCCTGTTATATGCCCCACTCTACCAAGAGAGCAGGTGAGTTTGGCCGAGTGGGCAATGCAATGGCACAGGAAGGGCATGATTGAGAAGATTGTTGACCCTCAAATCGCTAGCTCCATTAACACTGGTTCGCTGAAGAAGTATGTAGAAGCTGCAGAGAAATGCCTTGCGGAGTATGGTGTGGATAGGCCTGGCATGGGAGATGTGTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGACAGCCTCGCAGATTGATACTCGAGAAGACAATACTTCGAGTCTCATTTCTTTGGATAAAGCAAGTGAGAAAGATGACACAAACTCAAAGGATGGCTCTGCACTTGGTGGTGCAGTGAGCGAGGATTCTGTAGTCACAGCTGGTGGTTCTCCTTTGTTTGATAAAGGGAATGTCCAGGGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0042546 GO:0043170 GO:0044085 GO:0044238 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

1369

Amino Acids

153.17

Weight (kDa)

6.31

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	204 - 245	2.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	205 - 244	1.5e-07	Ring finger domain
zf-C3HC4_2	PF13923	206 - 243	2.6e-12	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	206 - 243	2.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	206 - 241	1.6e-06	RING-type zinc-finger
zf-RING_5	PF14634	206 - 245	7e-06	zinc-RING finger domain
zf-C3HC4_4	PF15227	206 - 243	7.4e-06	zinc finger of C3HC4-type, RING
LON_substr_bdg	PF02190	290 - 477	1.5e-23	ATP-dependent protease La (LON) substrate-binding domain
Malectin_like	PF12819	538 - 901	7.3e-30	Malectin-like domain
Malectin	PF11721	724 - 870	2.6e-09	Malectin domain
Pkinase	PF00069	1031 - 1234	2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1033 - 1227	2.5e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63450 AT2G31990 AT2G31990 AT2G31990 AT2G32740 AT5G41250
fragaria_vesca	FvH4_5g02120
malus_domestica	MD06G1081200.v1.1 MD14G1103100.v1.1
prunus_persica	Prupe.5G098300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0198011
rosa_laevigata	RLG00000003893
rosa_multiflora	Rmu_co8320403.1_g000001 Rmu_sc0000221.1_g000033 Rmu_sc0001082.1_g000001
rosa_rugosa	Rorug07G0045300
rosa_samantha	Rh7CG178300
rosa_wichuraiana	Rw7G014750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3706
AatII	GACGTC	1 cut(s)	1387
Acc36I	ACCTGC	2 cut(s)	3366, 3706
Acc65I	GGTACC	2 cut(s)	1137, 2166
AccB1I	GGYRCC	2 cut(s)	1137, 2166
AccI	GTMKAC	3 cut(s)	541, 1814, 2502
AccII	CGCG	2 cut(s)	1674, 2558
AclWI	GGATC	9 cut(s)	278, 329, 342, 711, 1195, 1334, 1410, 1799, 3590
AcoI	YGGCCR	3 cut(s)	1837, 3043, 3726
AcsI	RAATTY	6 cut(s)	278, 529, 812, 2338, 2392, 3493
AcuI	CTGAAG	9 cut(s)	447, 509, 1336, 1510, 1701, 2116, 2327, 3592, 3836
AcyI	GRCGYC	1 cut(s)	1384
AdeI	CACNNNGTG	1 cut(s)	4031
AfeI	AGCGCT	1 cut(s)	1349
AfiI	CCNNNNNNNGG	7 cut(s)	979, 1184, 1678, 2123, 2341, 2748, 3878
AflIII	ACRYGT	2 cut(s)	758, 2274
AhdI	GACNNNNNGTC	2 cut(s)	1690, 2215
AhlI	ACTAGT	1 cut(s)	3301
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	6 cut(s)	110, 156, 2644, 3483, 3871, 4098
AleI	CACNNNNGTG	2 cut(s)	1970, 3569
Alw21I	GWGCWC	2 cut(s)	322, 2592
AlwI	GGATC	9 cut(s)	278, 329, 342, 711, 1195, 1334, 1410, 1799, 3590
AlwNI	CAGNNNCTG	1 cut(s)	1359
Ama87I	CYCGRG	3 cut(s)	462, 3386, 3945
Aor51HI	AGCGCT	1 cut(s)	1349
AoxI	GGCC	9 cut(s)	55, 459, 1558, 1837, 2186, 3043, 3683, 3726, 3869
ApoI	RAATTY	6 cut(s)	278, 529, 812, 2338, 2392, 3493
ArsI	GACNNNNNNTTYG	2 cut(s)	657, 689
AseI	ATTAAT	2 cut(s)	2508, 3204
Asp700I	GAANNNNTTC	3 cut(s)	397, 1059, 1986
Asp718I	GGTACC	2 cut(s)	1137, 2166
AspLEI	GCGC	5 cut(s)	1350, 1625, 2558, 2560, 3404
AspS9I	GGNCC	8 cut(s)	56, 460, 1126, 2186, 2642, 2762, 3048, 3326
AsuC2I	CCSGG	4 cut(s)	463, 464, 1836, 2662
AsuHPI	GGTGA	6 cut(s)	961, 2190, 2542, 2779, 3115, 3730
AsuNHI	GCTAGC	1 cut(s)	3791
AvaI	CYCGRG	3 cut(s)	462, 3386, 3945
AvaII	GGWCC	5 cut(s)	1126, 2642, 2762, 3048, 3326
AxyI	CCTNAGG	1 cut(s)	2259
BaeI	ACNNNNGTAYC	2 cut(s)	3290, 3323
BamHI	GGATCC	1 cut(s)	334
BanI	GGYRCC	2 cut(s)	1137, 2166
BanII	GRGCYC	1 cut(s)	2267
BarI	GAAGNNNNNNTAC	2 cut(s)	2950, 2982
BauI	CACGAG	1 cut(s)	3408
BbsI	GAAGAC	4 cut(s)	78, 476, 1294, 3957
Bbv12I	GWGCWC	2 cut(s)	322, 2592
BceAI	ACGGC	8 cut(s)	4, 70, 1695, 1800, 2726, 2841, 3058, 3554
BcgI	CGANNNNNNTGC	3 cut(s)	37, 2971, 3005
BciT130I	CCWGG	6 cut(s)	112, 158, 2646, 3485, 3873, 4100
BclI	TGATCA	1 cut(s)	2442
BcnI	CCSGG	4 cut(s)	463, 464, 1836, 2662
BcuI	ACTAGT	1 cut(s)	3301
BfaI	CTAG	6 cut(s)	753, 1191, 2937, 2970, 3302, 3792
BfmI	CTRYAG	2 cut(s)	3834, 4053
BfoI	RGCGCY	3 cut(s)	1351, 1626, 3405
BfuAI	ACCTGC	2 cut(s)	3366, 3706
BglI	GCCNNNNNGGC	1 cut(s)	3734
BlpI	GCTNAGC	1 cut(s)	2358
BmcAI	AGTACT	1 cut(s)	3605
Bme18I	GGWCC	5 cut(s)	1126, 2642, 2762, 3048, 3326
BmeRI	GACNNNNNGTC	2 cut(s)	1690, 2215
BmeT110I	CYCGRG	3 cut(s)	462, 3386, 3945
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	8 cut(s)	56, 460, 1126, 2186, 2642, 2762, 3048, 3326
BmiI	GGNNCC	9 cut(s)	336, 1012, 1127, 1139, 2168, 2232, 2763, 3182, 3328
BmsI	GCATC	6 cut(s)	308, 858, 1314, 1466, 1753, 2308
BmtI	GCTAGC	1 cut(s)	3795
BpiI	GAAGAC	4 cut(s)	78, 476, 1294, 3957
BplI	GAGNNNNNCTC	6 cut(s)	2057, 2089, 3327, 3359, 3914, 3946
BpmI	CTGGAG	2 cut(s)	464, 2064
Bpu10I	CCTNAGC	1 cut(s)	1344
Bpu1102I	GCTNAGC	1 cut(s)	2358
BpuEI	CTTGAG	2 cut(s)	1316, 2859
BpuMI	CCSGG	4 cut(s)	463, 464, 1836, 2662
Bsa29I	ATCGAT	2 cut(s)	175, 996
BsaHI	GRCGYC	1 cut(s)	1384
BsaI	GGTCTC	3 cut(s)	2611, 2863, 3330
BsaJI	CCNNGG	8 cut(s)	9, 110, 111, 462, 1800, 1953, 3136, 4099
BsaWI	WCCGGW	4 cut(s)	1759, 2163, 2764, 2927
BsaXI	ACNNNNNCTCC	6 cut(s)	1532, 1562, 2679, 2709, 3218, 3248
Bsc4I	CCNNNNNNNGG	7 cut(s)	979, 1184, 1678, 2123, 2341, 2748, 3878
Bse118I	RCCGGY	4 cut(s)	100, 2169, 2552, 3045
Bse1I	ACTGG	3 cut(s)	331, 3436, 3811
Bse21I	CCTNAGG	1 cut(s)	2259
Bse3DI	GCAATG	6 cut(s)	104, 1326, 2716, 2835, 3744, 3749
BseBI	CCWGG	6 cut(s)	112, 158, 2646, 3485, 3873, 4100
BseCI	ATCGAT	2 cut(s)	175, 996
BseDI	CCNNGG	8 cut(s)	9, 110, 111, 462, 1800, 1953, 3136, 4099
BseGI	GGATG	7 cut(s)	892, 984, 1768, 2734, 3097, 3493, 4021
BseLI	CCNNNNNNNGG	7 cut(s)	979, 1184, 1678, 2123, 2341, 2748, 3878
BseMI	GCAATG	6 cut(s)	104, 1326, 2716, 2835, 3744, 3749
BseNI	ACTGG	3 cut(s)	331, 3436, 3811
BsePI	GCGCGC	1 cut(s)	2556
BseRI	GAGGAG	4 cut(s)	197, 967, 2328, 2438
BseX3I	CGGCCG	2 cut(s)	1837, 3043
BsgI	GTGCAG	4 cut(s)	164, 3456, 4008, 4056
Bsh1236I	CGCG	2 cut(s)	1674, 2558
Bsh1285I	CGRYCG	2 cut(s)	1840, 3046
BshFI	GGCC	9 cut(s)	57, 461, 1560, 1839, 2188, 3045, 3685, 3728, 3871
BshNI	GGYRCC	2 cut(s)	1137, 2166
BshVI	ATCGAT	2 cut(s)	175, 996
BsiEI	CGRYCG	2 cut(s)	1840, 3046
BsiHKAI	GWGCWC	2 cut(s)	322, 2592
BsiHKCI	CYCGRG	3 cut(s)	462, 3386, 3945
BslFI	GGGAC	3 cut(s)	128, 1139, 2677
BslI	CCNNNNNNNGG	7 cut(s)	979, 1184, 1678, 2123, 2341, 2748, 3878
BsmFI	GGGAC	3 cut(s)	128, 1139, 2677
BsnI	GGCC	9 cut(s)	57, 461, 1560, 1839, 2188, 3045, 3685, 3728, 3871
Bso31I	GGTCTC	3 cut(s)	2611, 2863, 3330
BsoBI	CYCGRG	3 cut(s)	462, 3386, 3945
Bsp1286I	GDGCHC	3 cut(s)	322, 2267, 2592
Bsp1720I	GCTNAGC	1 cut(s)	2358
BspANI	GGCC	9 cut(s)	57, 461, 1560, 1839, 2188, 3045, 3685, 3728, 3871
BspDI	ATCGAT	2 cut(s)	175, 996
BspFNI	CGCG	2 cut(s)	1674, 2558
BspHI	TCATGA	2 cut(s)	45, 2668
BspLI	GGNNCC	9 cut(s)	336, 1012, 1127, 1139, 2168, 2232, 2763, 3182, 3328
BspMAI	CTGCAG	1 cut(s)	3838
BspMI	ACCTGC	2 cut(s)	3366, 3706
BspOI	GCTAGC	1 cut(s)	3795
BspPI	GGATC	9 cut(s)	278, 329, 342, 711, 1195, 1334, 1410, 1799, 3590
BspQI	GCTCTTC	1 cut(s)	528
BspT107I	GGYRCC	2 cut(s)	1137, 2166
BspTNI	GGTCTC	3 cut(s)	2611, 2863, 3330
BsrDI	GCAATG	6 cut(s)	104, 1326, 2716, 2835, 3744, 3749
BsrFI	RCCGGY	4 cut(s)	100, 2169, 2552, 3045
BsrI	ACTGG	3 cut(s)	331, 3436, 3811
BssAI	RCCGGY	4 cut(s)	100, 2169, 2552, 3045
BssECI	CCNNGG	8 cut(s)	9, 110, 111, 462, 1800, 1953, 3136, 4099
BssHII	GCGCGC	1 cut(s)	2556
BssNAI	GTATAC	3 cut(s)	542, 1815, 2503
BssNI	GRCGYC	1 cut(s)	1384
BssSI	CACGAG	1 cut(s)	3408
BssT1I	CCWWGG	1 cut(s)	3136
Bst1107I	GTATAC	3 cut(s)	542, 1815, 2503
Bst2BI	CACGAG	1 cut(s)	3408
Bst2UI	CCWGG	6 cut(s)	112, 158, 2646, 3485, 3873, 4100
Bst4CI	ACNGT	5 cut(s)	736, 974, 1619, 2113, 3525
Bst6I	CTCTTC	7 cut(s)	516, 528, 557, 1514, 1750, 2303, 2548
BstACI	GRCGYC	1 cut(s)	1384
BstAPI	GCANNNNNTGC	3 cut(s)	1238, 3424, 3677
BstC8I	GCNNGC	6 cut(s)	1243, 1365, 2141, 2558, 3165, 3793
BstF5I	GGATG	7 cut(s)	892, 984, 1768, 2734, 3097, 3493, 4021
BstFNI	CGCG	2 cut(s)	1674, 2558
BstH2I	RGCGCY	3 cut(s)	1351, 1626, 3405
BstHHI	GCGC	5 cut(s)	1350, 1625, 2558, 2560, 3404
BstMCI	CGRYCG	2 cut(s)	1840, 3046
BstMWI	GCNNNNNNNGC	9 cut(s)	356, 1025, 1238, 2991, 3238, 3424, 3509, 3677, 3734
BstNI	CCWGG	6 cut(s)	112, 158, 2646, 3485, 3873, 4100
BstNSI	RCATGY	4 cut(s)	350, 762, 2368, 3232
BstSFI	CTRYAG	2 cut(s)	3834, 4053
BstUI	CGCG	2 cut(s)	1674, 2558
BstV2I	GAAGAC	4 cut(s)	78, 476, 1294, 3957
BstX2I	RGATCY	5 cut(s)	334, 1187, 1339, 1402, 1791
BstXI	CCANNNNNNTGG	2 cut(s)	3347, 3372
BstYI	RGATCY	5 cut(s)	334, 1187, 1339, 1402, 1791
BstZ17I	GTATAC	3 cut(s)	542, 1815, 2503
BstZI	CGGCCG	2 cut(s)	1837, 3043
Bsu15I	ATCGAT	2 cut(s)	175, 996
Bsu36I	CCTNAGG	1 cut(s)	2259
BsuRI	GGCC	9 cut(s)	57, 461, 1560, 1839, 2188, 3045, 3685, 3728, 3871
BsuTUI	ATCGAT	2 cut(s)	175, 996
BtgZI	GCGATG	1 cut(s)	3233
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	7 cut(s)	892, 984, 1768, 2734, 3097, 3493, 4021
BtsI	GCAGTG	3 cut(s)	607, 2565, 4044
BtsIMutI	CAGTG	9 cut(s)	607, 775, 1315, 1917, 2109, 2565, 3263, 3804, 4044
BveI	ACCTGC	2 cut(s)	3366, 3706
Cac8I	GCNNGC	6 cut(s)	1243, 1365, 2141, 2558, 3165, 3793
CaiI	CAGNNNCTG	1 cut(s)	1359
CciI	TCATGA	2 cut(s)	45, 2668
CfoI	GCGC	5 cut(s)	1350, 1625, 2558, 2560, 3404
Cfr10I	RCCGGY	4 cut(s)	100, 2169, 2552, 3045
Cfr13I	GGNCC	8 cut(s)	56, 460, 1126, 2186, 2642, 2762, 3048, 3326
Cfr9I	CCCGGG	1 cut(s)	462
ClaI	ATCGAT	2 cut(s)	175, 996
CseI	GACGC	1 cut(s)	1907
DraI	TTTAAA	2 cut(s)	363, 1780
DraIII	CACNNNGTG	1 cut(s)	4031
DriI	GACNNNNNGTC	2 cut(s)	1690, 2215
EaeI	YGGCCR	3 cut(s)	1837, 3043, 3726
EagI	CGGCCG	2 cut(s)	1837, 3043
Eam1104I	CTCTTC	7 cut(s)	516, 528, 557, 1514, 1750, 2303, 2548
Eam1105I	GACNNNNNGTC	2 cut(s)	1690, 2215
EarI	CTCTTC	7 cut(s)	516, 528, 557, 1514, 1750, 2303, 2548
EciI	GGCGGA	1 cut(s)	1540
EclXI	CGGCCG	2 cut(s)	1837, 3043
Eco130I	CCWWGG	1 cut(s)	3136
Eco147I	AGGCCT	2 cut(s)	3685, 3871
Eco24I	GRGCYC	1 cut(s)	2267
Eco31I	GGTCTC	3 cut(s)	2611, 2863, 3330
Eco47I	GGWCC	5 cut(s)	1126, 2642, 2762, 3048, 3326
Eco47III	AGCGCT	1 cut(s)	1349
Eco52I	CGGCCG	2 cut(s)	1837, 3043
Eco57I	CTGAAG	9 cut(s)	447, 509, 1336, 1510, 1701, 2116, 2327, 3592, 3836
Eco81I	CCTNAGG	1 cut(s)	2259
Eco88I	CYCGRG	3 cut(s)	462, 3386, 3945
EcoRI	GAATTC	1 cut(s)	2338
EcoRII	CCWGG	6 cut(s)	110, 156, 2644, 3483, 3871, 4098
EcoT14I	CCWWGG	1 cut(s)	3136
EcoT22I	ATGCAT	1 cut(s)	2254
EcoT38I	GRGCYC	1 cut(s)	2267
ErhI	CCWWGG	1 cut(s)	3136
FalI	AAGNNNNNCTT	6 cut(s)	1971, 2003, 2027, 2059, 3120, 3152
FaqI	GGGAC	3 cut(s)	128, 1139, 2677
FauI	CCCGC	2 cut(s)	1251, 2791
FbaI	TGATCA	1 cut(s)	2442
FblI	GTMKAC	3 cut(s)	541, 1814, 2502
FokI	GGATG	7 cut(s)	899, 991, 1775, 2741, 3104, 3500, 4028
FriOI	GRGCYC	1 cut(s)	2267
FspBI	CTAG	6 cut(s)	753, 1191, 2937, 2970, 3302, 3792
GlaI	GCGC	5 cut(s)	1349, 1624, 2557, 2559, 3403
GsuI	CTGGAG	2 cut(s)	464, 2064
HaeII	RGCGCY	3 cut(s)	1351, 1626, 3405
HaeIII	GGCC	9 cut(s)	57, 461, 1560, 1839, 2188, 3045, 3685, 3728, 3871
HgaI	GACGC	1 cut(s)	1907
HhaI	GCGC	5 cut(s)	1350, 1625, 2558, 2560, 3404
Hin1I	GRCGYC	1 cut(s)	1384
Hin6I	GCGC	5 cut(s)	1348, 1623, 2556, 2558, 3402
HinP1I	GCGC	5 cut(s)	1348, 1623, 2556, 2558, 3402
HincII	GTYRAC	2 cut(s)	493, 3778
HindII	GTYRAC	2 cut(s)	493, 3778
HindIII	AAGCTT	3 cut(s)	2411, 2722, 3161
HphI	GGTGA	6 cut(s)	961, 2190, 2542, 2779, 3115, 3730
HpyCH4III	ACNGT	5 cut(s)	736, 974, 1619, 2113, 3525
HpyCH4IV	ACGT	4 cut(s)	66, 620, 1384, 2274
HpyF10VI	GCNNNNNNNGC	9 cut(s)	356, 1025, 1238, 2991, 3238, 3424, 3509, 3677, 3734
HpySE526I	ACGT	4 cut(s)	66, 620, 1384, 2274
Hsp92I	GRCGYC	1 cut(s)	1384
HspAI	GCGC	5 cut(s)	1348, 1623, 2556, 2558, 3402
KpnI	GGTACC	2 cut(s)	1141, 2170
Ksp22I	TGATCA	1 cut(s)	2442
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	7 cut(s)	1630, 1647, 2083, 2230, 2290, 3541, 3800
LweI	GCATC	6 cut(s)	308, 858, 1314, 1466, 1753, 2308
MaeI	CTAG	6 cut(s)	753, 1191, 2937, 2970, 3302, 3792
MaeII	ACGT	4 cut(s)	66, 620, 1384, 2274
MflI	RGATCY	5 cut(s)	334, 1187, 1339, 1402, 1791
MhlI	GDGCHC	3 cut(s)	322, 2267, 2592
MlyI	GAGTC	5 cut(s)	1718, 2078, 2093, 2659, 3973
MmeI	TCCRAC	6 cut(s)	956, 1920, 2050, 2387, 3126, 3525
Mph1103I	ATGCAT	1 cut(s)	2254
MroXI	GAANNNNTTC	3 cut(s)	397, 1059, 1986
MslI	CAYNNNNRTG	6 cut(s)	1970, 3345, 3370, 3432, 3459, 3569
MspA1I	CMGCKG	4 cut(s)	1721, 2136, 2603, 4064
MvaI	CCWGG	6 cut(s)	112, 158, 2646, 3485, 3873, 4100
MvnI	CGCG	2 cut(s)	1674, 2558
MwoI	GCNNNNNNNGC	9 cut(s)	356, 1025, 1238, 2991, 3238, 3424, 3509, 3677, 3734
NciI	CCSGG	4 cut(s)	463, 464, 1836, 2662
NheI	GCTAGC	1 cut(s)	3791
NlaIV	GGNNCC	9 cut(s)	336, 1012, 1127, 1139, 2168, 2232, 2763, 3182, 3328
NmeAIII	GCCGAG	1 cut(s)	3754
NmuCI	GTSAC	6 cut(s)	227, 649, 772, 1444, 2821, 4057
NsiI	ATGCAT	1 cut(s)	2254
NspI	RCATGY	4 cut(s)	350, 762, 2368, 3232
OliI	CACNNNNGTG	2 cut(s)	1970, 3569
PaeR7I	CTCGAG	2 cut(s)	3386, 3945
PagI	TCATGA	2 cut(s)	45, 2668
PaqCI	CACCTGC	1 cut(s)	3706
PasI	CCCWGGG	1 cut(s)	111
PauI	GCGCGC	1 cut(s)	2556
PceI	AGGCCT	2 cut(s)	3685, 3871
PciI	ACATGT	1 cut(s)	758
PciSI	GCTCTTC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 32, 172
PdmI	GAANNNNTTC	3 cut(s)	397, 1059, 1986
PfeI	GAWTC	8 cut(s)	172, 998, 1805, 1849, 2010, 2372, 3273, 4049
PfoI	TCCNGGA	2 cut(s)	2660, 3483
PleI	GAGTC	5 cut(s)	1718, 2078, 2093, 2659, 3972
PpsI	GAGTC	5 cut(s)	1718, 2078, 2093, 2659, 3972
PscI	ACATGT	1 cut(s)	758
PshBI	ATTAAT	2 cut(s)	2508, 3204
Psp6I	CCWGG	6 cut(s)	110, 156, 2644, 3483, 3871, 4098
PspGI	CCWGG	6 cut(s)	110, 156, 2644, 3483, 3871, 4098
PspN4I	GGNNCC	9 cut(s)	336, 1012, 1127, 1139, 2168, 2232, 2763, 3182, 3328
PspPI	GGNCC	8 cut(s)	56, 460, 1126, 2186, 2642, 2762, 3048, 3326
PspXI	VCTCGAGB	1 cut(s)	3386
PstI	CTGCAG	1 cut(s)	3838
PstNI	CAGNNNCTG	1 cut(s)	1359
PsuI	RGATCY	5 cut(s)	334, 1187, 1339, 1402, 1791
PteI	GCGCGC	1 cut(s)	2556
PvuII	CAGCTG	2 cut(s)	1721, 4064
RseI	CAYNNNNRTG	6 cut(s)	1970, 3345, 3370, 3432, 3459, 3569
SapI	GCTCTTC	1 cut(s)	528
Sau96I	GGNCC	8 cut(s)	56, 460, 1126, 2186, 2642, 2762, 3048, 3326
ScaI	AGTACT	1 cut(s)	3605
SchI	GAGTC	5 cut(s)	1718, 2078, 2093, 2659, 3973
SduI	GDGCHC	3 cut(s)	322, 2267, 2592
SfaNI	GCATC	6 cut(s)	308, 858, 1314, 1466, 1753, 2308
SfcI	CTRYAG	2 cut(s)	3834, 4053
Sfr274I	CTCGAG	2 cut(s)	3386, 3945
SgrAI	CRCCGGYG	1 cut(s)	2552
SinI	GGWCC	5 cut(s)	1126, 2642, 2762, 3048, 3326
SlaI	CTCGAG	2 cut(s)	3386, 3945
SmaI	CCCGGG	1 cut(s)	464
SmiMI	CAYNNNNRTG	6 cut(s)	1970, 3345, 3370, 3432, 3459, 3569
SmlI	CTYRAG	4 cut(s)	1295, 2874, 3386, 3945
SmoI	CTYRAG	4 cut(s)	1295, 2874, 3386, 3945
SpeI	ACTAGT	1 cut(s)	3301
SseBI	AGGCCT	2 cut(s)	3685, 3871
SspMI	CTAG	6 cut(s)	753, 1191, 2937, 2970, 3302, 3792
StuI	AGGCCT	2 cut(s)	3685, 3871
StyI	CCWWGG	1 cut(s)	3136
TaaI	ACNGT	5 cut(s)	736, 974, 1619, 2113, 3525
TaiI	ACGT	4 cut(s)	69, 623, 1387, 2277
TaqII	GACCGA	2 cut(s)	65, 2332
TatI	WGTACW	5 cut(s)	2490, 2754, 2963, 3312, 3603
TauI	GCSGC	2 cut(s)	1842, 2139
TfiI	GAWTC	8 cut(s)	172, 998, 1805, 1849, 2010, 2372, 3273, 4049
TscAI	CASTG	9 cut(s)	607, 775, 1315, 1917, 2116, 2572, 3270, 3811, 4044
TseFI	GTSAC	6 cut(s)	227, 649, 772, 1444, 2821, 4057
Tsp45I	GTSAC	6 cut(s)	227, 649, 772, 1444, 2821, 4057
TspDTI	ATGAA	8 cut(s)	34, 105, 468, 476, 657, 733, 1737, 2801
TspGWI	ACGGA	2 cut(s)	337, 1003
TspMI	CCCGGG	1 cut(s)	462
TspRI	CASTG	9 cut(s)	607, 775, 1315, 1917, 2116, 2572, 3270, 3811, 4044
VpaK11BI	GGWCC	5 cut(s)	1126, 2642, 2762, 3048, 3326
VspI	ATTAAT	2 cut(s)	2508, 3204
XapI	RAATTY	6 cut(s)	278, 529, 812, 2338, 2392, 3493
XbaI	TCTAGA	2 cut(s)	1190, 2969
XceI	RCATGY	4 cut(s)	350, 762, 2368, 3232
XhoI	CTCGAG	2 cut(s)	3386, 3945
XmaI	CCCGGG	1 cut(s)	462
XmiI	GTMKAC	3 cut(s)	541, 1814, 2502
XmnI	GAANNNNTTC	3 cut(s)	397, 1059, 1986
XspI	CTAG	6 cut(s)	753, 1191, 2937, 2970, 3302, 3792
ZraI	GACGTC	1 cut(s)	1385
ZrmI	AGTACT	1 cut(s)	3605
Zsp2I	ATGCAT	1 cut(s)	2254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.