FvH4_5g02120

Xyloglucan galactosyltransferase KATAMARI1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
1330174 .. 1332139
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02120.t1

Sequence Viewer

Length: 1743 bp
ATGGCGGTTGCCTTATCGAAAAGAAGTTCCAAACACTTGAAGAAAGAAGCCCCGAAAAGGGAGCCTTGTTTCTGTTTGTCACCATGTTTATGTTTCATTGCTCTATTCAAGTTTCTATATAGACTTCCTGCAGCATTTTTGTTGCTTTTTCTTATCTACCTCTGGTCTTCCTCCACCACCATTATCTCTGGCAACATTGTTCATGTCTGTATCTCGTCTCGGAAGCTCAATAATCATTACTGCCTATCTGCAGGTAGTACAAGACCCAAATTTGAACTCCCAAATCTCAATAATGCTACTCATTACCTCCACACTCCTGACCCGAGTTCAAACCTCTCTATCTCGATATCGCCTCCTTTGTCCCAAAATAACAGTCCCATTAGTCCTCCACCTCCTAAAGTCAGTAGTGAGATTGTGATCAGAGAGACTGTTCAAGTTGTCCATGATGAGTCTGATCCAGTGAAGAATGGAGCCAACAAAGAACGAGAAGAAGAGATTGCAAATGCAAAGAAGCAAGTTGAAGAGCAGCTAAGATTGCACAGATCATGGATATCAAATAAGAAGCATGAAGGGTGTGAAGGAAGAGGAGTCTATGTGTATGACTTGCCATCCAAGTTTAATAAGGACTTGTTGGGTCAATGCAGAGACATGGTTCCATGGATGGATTTCTGCGAGTATTTCAAAAACGAGGCATTGGGTGAATCGATTCCCAAGCTTGGAGATGGGTGGTACCACACTCATCAGTACTCATTGGAGCCAATATTCCATCAAAGGATCTTGAATCATCCTTGCAGGGTTCACAGTGAGAATGAAGCAAAGCTTTTCTATGTTCCATTCTATGGAGGTTTGGACATTCTGAGGTGGCATTTCAAGAATGTGTCCAATGATGTCAAGGACACTTTGAGCTTGGAGCTCATAACATGGCTTAAGAAGCAAGACTTTTGGAGGAAGAATTCAGGTAGAGATCATGTGCTGGTGTTGGGGAAGATTTCATGGGATTTTAGGCGAAAAGATGGTTCGTGGGGGACGAACTTCCTCGAAATTGATCAAATGCAAAATCCAATCAAGCTCTTGATTGAGAGACAACCATGGCAACAAAATGACGTTGGAATCCCACATCCAACATTCTTCCACCCGAATTCAGACGATGATATAATGGCATTGCAATGGAAGATCATTAGCTCATATAGAAAAACGTTAGTGAGCTTCGCTGGTGCAGCAAGGCCTAGTGCAGCCGAGAGCATAAGGTCCACATTGATCGATCAGTGCAACTCAGCCGAAAATGGGAAATGTCACTTCCTCAACTGCCATACAGGTGATTGTGATAAGCCAGAGTCGGTCATTGAGCTTTTCATGGAGTCTGAATTCTGCTTGCAGCCACCAGGAGACAGCCCAACTCGAAAGTCCTTATTTGATTCATTAATATCTGGTTGCATCCCTGTGCTTTTCGATCCTTTCACAGCTTATTATCAGTATCCATGGCATCTCCCAGTGGAACATGGAAAGTATTCTGTGTTTATAGACCAGAAAGATGTGAGGGGAATGAAGGTGAATGTGGTGGAGATGCTTATGAAGATTCCTAAGGAGAACAGGGATGATATGAGGAGGCACATTGTGTACGAGTTGTTGCCTGGTTTGGTTTATGGGGATTCAAATGCCCAGTTTGACAAGTTTCAGGATGCATTTTCGATTACAATGAGTAATCTGATGGAGAGGGTCACCAAATTGGAGTTAGCCGTATAA

Protein Analysis

581

Amino Acids

66.67

Weight (kDa)

7.29

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 192 - 514 3.4e-83 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012934)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
Acc65I GGTACC 1 cut(s) 729
AccB1I GGYRCC 1 cut(s) 729
AccB7I CCANNNNNTGG 1 cut(s) 839
AciI CCGC 1 cut(s) 5
AclI AACGTT 1 cut(s) 1196
AclWI GGATC 3 cut(s) 449, 782, 1445
AcsI RAATTY 4 cut(s) 269, 952, 1138, 1364
AdeI CACNNNGTG 1 cut(s) 1615
AfaI GTAC 4 cut(s) 259, 731, 746, 1619
AfiI CCNNNNNNNGG 5 cut(s) 57, 58, 716, 839, 1284
AflII CTTAAG 1 cut(s) 926
AjnI CCWGG 2 cut(s) 1381, 1630
Alw21I GWGCWC 1 cut(s) 915
Alw26I GTCTC 5 cut(s) 222, 419, 639, 1075, 1380
AlwI GGATC 3 cut(s) 449, 782, 1445
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 1 cut(s) 1223
ApeKI GCWGC 5 cut(s) 131, 526, 1217, 1232, 1375
ApoI RAATTY 4 cut(s) 269, 952, 1138, 1364
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AseI ATTAAT 1 cut(s) 1421
Asp700I GAANNNNTTC 2 cut(s) 705, 1507
Asp718I GGTACC 1 cut(s) 729
AspS9I GGNCC 1 cut(s) 1248
AsuHPI GGTGA 5 cut(s) 72, 710, 1328, 1561, 1711
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 1248
AxyI CCTNAGG 1 cut(s) 1581
BanI GGYRCC 1 cut(s) 729
BanII GRGCYC 1 cut(s) 915
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 915
BbvI GCAGC 5 cut(s) 143, 538, 1229, 1244, 1387
BccI CCATC 6 cut(s) 616, 655, 716, 774, 1007, 1702
BceAI ACGGC 1 cut(s) 1721
BciT130I CCWGG 2 cut(s) 1383, 1632
BciVI GTATCC 1 cut(s) 1485
BclI TGATCA 2 cut(s) 417, 1045
BcoDI GTCTC 5 cut(s) 222, 419, 639, 1075, 1380
BfaI CTAG 1 cut(s) 1227
BfmI CTRYAG 2 cut(s) 129, 249
BfrI CTTAAG 1 cut(s) 926
BfuAI ACCTGC 1 cut(s) 242
BfuI GTATCC 1 cut(s) 1485
BisI GCNGC 5 cut(s) 132, 527, 1218, 1233, 1376
BlsI GCNGC 5 cut(s) 133, 528, 1219, 1234, 1377
BmcAI AGTACT 1 cut(s) 746
Bme1390I CCNGG 2 cut(s) 1383, 1632
Bme18I GGWCC 1 cut(s) 1248
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 1248
BmiI GGNNCC 5 cut(s) 63, 472, 654, 731, 756
BmrFI CCNGG 2 cut(s) 1383, 1632
BmrI ACTGGG 2 cut(s) 1484, 1654
BmsI GCATC 4 cut(s) 1443, 1492, 1554, 1669
BmuI ACTGGG 2 cut(s) 1484, 1654
BpiI GAAGAC 1 cut(s) 159
Bsa29I ATCGAT 2 cut(s) 704, 1260
BsaBI GATNNNNATC 1 cut(s) 416
BsaJI CCNNGG 3 cut(s) 656, 1088, 1478
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 58, 716, 839, 1284
Bse1I ACTGG 3 cut(s) 458, 1490, 1660
Bse21I CCTNAGG 1 cut(s) 1581
Bse3DI GCAATG 3 cut(s) 96, 1160, 1172
Bse8I GATNNNNATC 1 cut(s) 416
BseBI CCWGG 2 cut(s) 1383, 1632
BseCI ATCGAT 2 cut(s) 704, 1260
BseDI CCNNGG 3 cut(s) 656, 1088, 1478
BseGI GGATG 7 cut(s) 608, 666, 784, 1117, 1434, 1600, 1684
BseJI GATNNNNATC 1 cut(s) 416
BseLI CCNNNNNNNGG 5 cut(s) 57, 58, 716, 839, 1284
BseMI GCAATG 3 cut(s) 96, 1160, 1172
BseMII CTCAG 2 cut(s) 848, 1287
BseNI ACTGG 3 cut(s) 458, 1490, 1660
BseRI GAGGAG 2 cut(s) 600, 1618
BseXI GCAGC 5 cut(s) 143, 538, 1229, 1244, 1387
BsgI GTGCAG 2 cut(s) 1236, 1251
BshFI GGCC 1 cut(s) 1225
BshNI GGYRCC 1 cut(s) 729
BshVI ATCGAT 2 cut(s) 704, 1260
BsiHKAI GWGCWC 1 cut(s) 915
BsiHKCI CYCGRG 1 cut(s) 322
BslFI GGGAC 3 cut(s) 346, 360, 1039
BslI CCNNNNNNNGG 5 cut(s) 57, 58, 716, 839, 1284
BsmAI GTCTC 5 cut(s) 222, 419, 639, 1075, 1380
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 3 cut(s) 346, 360, 1039
BsnI GGCC 1 cut(s) 1225
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 915
Bsp19I CCATGG 3 cut(s) 656, 1088, 1478
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 1225
BspCNI CTCAG 2 cut(s) 849, 1286
BspDI ATCGAT 2 cut(s) 704, 1260
BspLI GGNNCC 5 cut(s) 63, 472, 654, 731, 756
BspMAI CTGCAG 2 cut(s) 133, 253
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 3 cut(s) 449, 782, 1445
BspQI GCTCTTC 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 729
BspTI CTTAAG 1 cut(s) 926
BsrDI GCAATG 3 cut(s) 96, 1160, 1172
BsrI ACTGG 3 cut(s) 458, 1490, 1660
BssECI CCNNGG 3 cut(s) 656, 1088, 1478
BssT1I CCWWGG 3 cut(s) 656, 1088, 1478
Bst2UI CCWGG 2 cut(s) 1383, 1632
Bst4CI ACNGT 3 cut(s) 374, 430, 803
Bst6I CTCTTC 3 cut(s) 486, 516, 577
BstAFI CTTAAG 1 cut(s) 926
BstC8I GCNNGC 1 cut(s) 1373
BstDEI CTNAG 4 cut(s) 530, 857, 1273, 1581
BstDSI CCRYGG 3 cut(s) 656, 1088, 1478
BstEII GGTNACC 1 cut(s) 1717
BstF5I GGATG 7 cut(s) 608, 666, 784, 1117, 1434, 1600, 1684
BstMAI GTCTC 5 cut(s) 222, 419, 639, 1075, 1380
BstMWI GCNNNNNNNGC 3 cut(s) 535, 931, 1217
BstNI CCWGG 2 cut(s) 1383, 1632
BstPI GGTNACC 1 cut(s) 1717
BstSCI CCNGG 2 cut(s) 1381, 1630
BstSFI CTRYAG 2 cut(s) 129, 249
BstV1I GCAGC 5 cut(s) 143, 538, 1229, 1244, 1387
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 774
BstYI RGATCY 1 cut(s) 774
Bsu15I ATCGAT 2 cut(s) 704, 1260
Bsu36I CCTNAGG 1 cut(s) 1581
BsuI GTATCC 1 cut(s) 1485
BsuRI GGCC 1 cut(s) 1225
BsuTUI ATCGAT 2 cut(s) 704, 1260
BtgI CCRYGG 3 cut(s) 656, 1088, 1478
BtsCI GGATG 7 cut(s) 608, 666, 784, 1117, 1434, 1600, 1684
BtsIMutI CAGTG 4 cut(s) 465, 808, 1271, 1497
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 1373
Cfr13I GGNCC 1 cut(s) 1248
ClaI ATCGAT 2 cut(s) 704, 1260
Csp6I GTAC 4 cut(s) 258, 730, 745, 1618
CviQI GTAC 4 cut(s) 258, 730, 745, 1618
DdeI CTNAG 4 cut(s) 530, 857, 1273, 1581
DraIII CACNNNGTG 1 cut(s) 1615
Eam1104I CTCTTC 3 cut(s) 486, 516, 577
EarI CTCTTC 3 cut(s) 486, 516, 577
Ecl136II GAGCTC 1 cut(s) 913
Eco130I CCWWGG 3 cut(s) 656, 1088, 1478
Eco147I AGGCCT 1 cut(s) 1225
Eco24I GRGCYC 1 cut(s) 915
Eco32I GATATC 2 cut(s) 348, 552
Eco47I GGWCC 1 cut(s) 1248
Eco53kI GAGCTC 1 cut(s) 913
Eco81I CCTNAGG 1 cut(s) 1581
Eco88I CYCGRG 1 cut(s) 322
Eco91I GGTNACC 1 cut(s) 1717
EcoICRI GAGCTC 1 cut(s) 913
EcoO65I GGTNACC 1 cut(s) 1717
EcoRI GAATTC 3 cut(s) 952, 1138, 1364
EcoRII CCWGG 2 cut(s) 1381, 1630
EcoRV GATATC 2 cut(s) 348, 552
EcoT14I CCWWGG 3 cut(s) 656, 1088, 1478
EcoT22I ATGCAT 1 cut(s) 1684
EcoT38I GRGCYC 1 cut(s) 915
ErhI CCWWGG 3 cut(s) 656, 1088, 1478
Esp3I CGTCTC 1 cut(s) 222
FalI AAGNNNNNCTT 6 cut(s) 49, 81, 804, 836, 923, 955
FaqI GGGAC 3 cut(s) 346, 360, 1039
FbaI TGATCA 2 cut(s) 417, 1045
Fnu4HI GCNGC 5 cut(s) 132, 527, 1218, 1233, 1376
FokI GGATG 7 cut(s) 595, 673, 771, 1104, 1421, 1607, 1691
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 5 cut(s) 132, 527, 1218, 1233, 1376
FspBI CTAG 1 cut(s) 1227
GluI GCNGC 5 cut(s) 132, 527, 1218, 1233, 1376
HaeIII GGCC 1 cut(s) 1225
HindIII AAGCTT 2 cut(s) 713, 818
HphI GGTGA 5 cut(s) 72, 710, 1328, 1561, 1711
Hpy166II GTNNAC 3 cut(s) 799, 1251, 1618
Hpy188I TCNGA 7 cut(s) 222, 422, 454, 858, 1144, 1363, 1707
Hpy188III TCNNGA 6 cut(s) 317, 343, 778, 871, 1072, 1676
Hpy8I GTNNAC 3 cut(s) 799, 1251, 1618
HpyAV CCTTC 3 cut(s) 563, 572, 1540
HpyCH4III ACNGT 3 cut(s) 374, 430, 803
HpyCH4IV ACGT 2 cut(s) 1104, 1196
HpyF10VI GCNNNNNNNGC 3 cut(s) 535, 931, 1217
HpyF3I CTNAG 4 cut(s) 530, 857, 1273, 1581
HpySE526I ACGT 2 cut(s) 1104, 1196
KpnI GGTACC 1 cut(s) 733
Ksp22I TGATCA 2 cut(s) 417, 1045
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 4 cut(s) 61, 470, 754, 910
Lsp1109I GCAGC 5 cut(s) 143, 538, 1229, 1244, 1387
LweI GCATC 4 cut(s) 1443, 1492, 1554, 1669
MaeI CTAG 1 cut(s) 1227
MaeII ACGT 2 cut(s) 1104, 1196
MaeIII GTNAC 3 cut(s) 78, 1292, 1717
MflI RGATCY 1 cut(s) 774
MhlI GDGCHC 1 cut(s) 915
MluCI AATT 6 cut(s) 269, 952, 1041, 1138, 1364, 1724
MlyI GAGTC 4 cut(s) 458, 597, 1343, 1367
MmeI TCCRAC 2 cut(s) 1087, 1145
Mph1103I ATGCAT 1 cut(s) 1684
MroXI GAANNNNTTC 2 cut(s) 705, 1507
MseI TTAA 3 cut(s) 618, 927, 1421
MslI CAYNNNNRTG 4 cut(s) 88, 1165, 1314, 1439
MspCI CTTAAG 1 cut(s) 926
MspR9I CCNGG 2 cut(s) 1383, 1632
MvaI CCWGG 2 cut(s) 1383, 1632
MwoI GCNNNNNNNGC 3 cut(s) 535, 931, 1217
NcoI CCATGG 3 cut(s) 656, 1088, 1478
NlaIV GGNNCC 5 cut(s) 63, 472, 654, 731, 756
NmeAIII GCCGAG 1 cut(s) 1261
NmuCI GTSAC 3 cut(s) 78, 1292, 1717
NsiI ATGCAT 1 cut(s) 1684
PceI AGGCCT 1 cut(s) 1225
PciSI GCTCTTC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 1025
PdmI GAANNNNTTC 2 cut(s) 705, 1507
PfeI GAWTC 7 cut(s) 701, 706, 781, 1110, 1415, 1576, 1649
PflMI CCANNNNNTGG 1 cut(s) 839
PkrI GCNGC 5 cut(s) 133, 528, 1219, 1234, 1377
PleI GAGTC 4 cut(s) 457, 596, 1342, 1366
PpsI GAGTC 4 cut(s) 457, 596, 1342, 1366
PshBI ATTAAT 1 cut(s) 1421
Psp124BI GAGCTC 1 cut(s) 915
Psp1406I AACGTT 1 cut(s) 1196
Psp6I CCWGG 2 cut(s) 1381, 1630
PspEI GGTNACC 1 cut(s) 1717
PspGI CCWGG 2 cut(s) 1381, 1630
PspN4I GGNNCC 5 cut(s) 63, 472, 654, 731, 756
PspPI GGNCC 1 cut(s) 1248
PstI CTGCAG 2 cut(s) 133, 253
PsuI RGATCY 1 cut(s) 774
RsaI GTAC 4 cut(s) 259, 731, 746, 1619
RsaNI GTAC 4 cut(s) 258, 730, 745, 1618
RseI CAYNNNNRTG 4 cut(s) 88, 1165, 1314, 1439
SacI GAGCTC 1 cut(s) 915
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 3 cut(s) 618, 927, 1421
SatI GCNGC 5 cut(s) 132, 527, 1218, 1233, 1376
Sau96I GGNCC 1 cut(s) 1248
ScaI AGTACT 1 cut(s) 746
SchI GAGTC 4 cut(s) 458, 597, 1343, 1367
ScrFI CCNGG 2 cut(s) 1383, 1632
SduI GDGCHC 1 cut(s) 915
SfaNI GCATC 4 cut(s) 1443, 1492, 1554, 1669
SfcI CTRYAG 2 cut(s) 129, 249
SinI GGWCC 1 cut(s) 1248
SmiMI CAYNNNNRTG 4 cut(s) 88, 1165, 1314, 1439
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 6 cut(s) 269, 952, 1041, 1138, 1364, 1724
SseBI AGGCCT 1 cut(s) 1225
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 762
SspMI CTAG 1 cut(s) 1227
SstI GAGCTC 1 cut(s) 915
StuI AGGCCT 1 cut(s) 1225
StyD4I CCNGG 2 cut(s) 1381, 1630
StyI CCWWGG 3 cut(s) 656, 1088, 1478
TaaI ACNGT 3 cut(s) 374, 430, 803
TaiI ACGT 2 cut(s) 1107, 1199
TaqI TCGA 8 cut(s) 17, 344, 704, 1038, 1260, 1399, 1449, 1688
TaqII GACCGA 1 cut(s) 1327
TasI AATT 6 cut(s) 269, 952, 1041, 1138, 1364, 1724
TatI WGTACW 2 cut(s) 257, 744
TfiI GAWTC 7 cut(s) 701, 706, 781, 1110, 1415, 1576, 1649
Tru1I TTAA 3 cut(s) 618, 927, 1421
Tru9I TTAA 3 cut(s) 618, 927, 1421
TscAI CASTG 4 cut(s) 465, 808, 1271, 1497
TseFI GTSAC 3 cut(s) 78, 1292, 1717
TseI GCWGC 5 cut(s) 131, 526, 1217, 1232, 1375
Tsp45I GTSAC 3 cut(s) 78, 1292, 1717
TspDTI ATGAA 9 cut(s) 85, 191, 582, 825, 981, 1342, 1407, 1559, 1586
TspRI CASTG 4 cut(s) 465, 808, 1271, 1497
Van91I CCANNNNNTGG 1 cut(s) 839
Vha464I CTTAAG 1 cut(s) 926
VpaK11BI GGWCC 1 cut(s) 1248
VspI ATTAAT 1 cut(s) 1421
XapI RAATTY 4 cut(s) 269, 952, 1138, 1364
XmnI GAANNNNTTC 2 cut(s) 705, 1507
XspI CTAG 1 cut(s) 1227
ZrmI AGTACT 1 cut(s) 746
Zsp2I ATGCAT 1 cut(s) 1684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.