Rmu_sc0001082.1_g000001

Xyloglucan galactosyltransferase KATAMARI1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001082.1
Physical Location & Seq
Forward (+)
20 .. 1570
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001082.1_g000001.1.cds

Sequence Viewer

Length: 1551 bp
atggcagttcccttgtcgaaaagaaattccaaacacttgaagaaagaagccccgaaaagggagccttgtttctgtttctcaccatgtttctgtttcattgctctattcaagtttctatatagactccctgcagcatttttctttctttttcttatctacctctggtcttcctccaccaccattatttcaggtaacattgttcatgtctgtgtctcgtcgcggaagctcaacaatcattactgcctatctgctggtagtaccagacccaattttgaactcccaaatctcagtaatgctacactttacctccacattcctgacccgagttcaaacctctctatctcgatatcgcctcctttgtcccaaaaaaacagtcccattagtcctccacctcctaaagtcagtagtgagattgtgatcagagagactgttcaagttgtccatgatgagtctgatccagcaaagaatggggccaacaaagaacgagaagaagagattgcaaatgcaaagaaggaagtcgaagagcagctaagattgcacagatcatggatatcaaataaaaagcatgaagggtgtgaaggaagaggagtctacgtgtatgacttgccatccaagtttaacaaggacttgttgggtcaatgcagagacatggttccatggatggatttctgcaagtacttcaggaatgaggcgttgggtgaaccgattcccaaacttggagaggggtggtaccacactcatcagtactcattggagcccatattccaccaaaggatcttgaagcacccttgcagggtttacagtgaaaatgaagcgaagcttttctatgttccattttatggcggtttggacattctgagatggcatttcaagaatgtgtccaatgatgtcaaggacactttgagcttggagctcataacatggcttgagaagcaagactcttggactaagaattcaggtagagatcattttctggtgttggggaagatctcatgggattttaggctagtgagcttcgctggtgcagcaaggcctggtgcagctgaaagcataaggtccatactgatcaaccagtgcaacacagccgaaaatgggaaatgtcactttctcaactgtggttcaggtggttgtgatcagccagaaatggtcactgagcttttcatggagtctgaattctgcttgcagcctccaggagatagcccaactcgaaagtccttattcgattccttaatttcaggttgtattcctgtgattttcgatcctttcacagcttactatcagtatccatggcatctcccagaggaacatggaaagtattctgtgtttgtagaccaagaagatgtgaggggaatgaaggtgaatgtggtggaaatgcttatgaagatttctaaggaaaagagggatgatatgaggaggcacattgtgtatgagttgttgcctggtttggtttatggggattcaaatgccaagtttgacaagtttcaggatgcattttcgattacaatgagaaatctgatggagagggtcaccaaattggatttagctgtataa

Protein Analysis

516

Amino Acids

59.18

Weight (kDa)

7.54

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012934)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 729
AccB1I GGYRCC 1 cut(s) 729
AccB7I CCANNNNNTGG 1 cut(s) 839
AccI GTMKAC 2 cut(s) 591, 1329
AccII CGCG 1 cut(s) 220
AciI CCGC 2 cut(s) 220, 843
AclWI GGATC 3 cut(s) 449, 782, 1253
AcsI RAATTY 3 cut(s) 25, 952, 1172
AcuI CTGAAG 1 cut(s) 664
AdeI CACNNNGTG 1 cut(s) 1423
AfaI GTAC 4 cut(s) 259, 677, 731, 746
AfiI CCNNNNNNNGG 6 cut(s) 57, 58, 716, 793, 839, 1092
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 8 cut(s) 40, 109, 275, 330, 434, 781, 871, 1461
AjnI CCWGG 3 cut(s) 1033, 1189, 1438
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
Alw21I GWGCWC 1 cut(s) 915
Alw26I GTCTC 3 cut(s) 217, 419, 639
AlwI GGATC 3 cut(s) 449, 782, 1253
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 2 cut(s) 471, 1031
ApeKI GCWGC 5 cut(s) 131, 526, 1025, 1040, 1183
ApoI RAATTY 3 cut(s) 25, 952, 1172
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
Asp700I GAANNNNTTC 3 cut(s) 705, 821, 1315
Asp718I GGTACC 1 cut(s) 729
AspS9I GGNCC 2 cut(s) 471, 1056
AsuHPI GGTGA 4 cut(s) 72, 710, 1369, 1519
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 1056
BanI GGYRCC 1 cut(s) 729
BanII GRGCYC 2 cut(s) 759, 915
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 915
BbvI GCAGC 5 cut(s) 143, 538, 1037, 1052, 1195
BccI CCATC 4 cut(s) 616, 655, 855, 1510
BciT130I CCWGG 3 cut(s) 1035, 1191, 1440
BciVI GTATCC 1 cut(s) 1293
BclI TGATCA 3 cut(s) 417, 1065, 1132
BcoDI GTCTC 3 cut(s) 217, 419, 639
BfaI CTAG 1 cut(s) 1007
BfmI CTRYAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 1293
BglII AGATCT 1 cut(s) 987
BisI GCNGC 5 cut(s) 132, 527, 1026, 1041, 1184
BlsI GCNGC 5 cut(s) 133, 528, 1027, 1042, 1185
BmcAI AGTACT 2 cut(s) 677, 746
Bme1390I CCNGG 3 cut(s) 1035, 1191, 1440
Bme18I GGWCC 1 cut(s) 1056
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 471, 1056
BmiI GGNNCC 5 cut(s) 63, 472, 654, 731, 756
BmrFI CCNGG 3 cut(s) 1035, 1191, 1440
BmsI GCATC 2 cut(s) 1300, 1477
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 1173
BpuEI CTTGAG 1 cut(s) 947
BsaAI YACGTR 1 cut(s) 595
BsaBI GATNNNNATC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 656, 1286
BsaXI ACNNNNNCTCC 4 cut(s) 291, 321, 579, 609
Bsc4I CCNNNNNNNGG 6 cut(s) 57, 58, 716, 793, 839, 1092
Bse1I ACTGG 1 cut(s) 1072
Bse3DI GCAATG 1 cut(s) 96
Bse8I GATNNNNATC 1 cut(s) 416
BseBI CCWGG 3 cut(s) 1035, 1191, 1440
BseDI CCNNGG 2 cut(s) 656, 1286
BseGI GGATG 4 cut(s) 608, 666, 1408, 1492
BseJI GATNNNNATC 1 cut(s) 416
BseLI CCNNNNNNNGG 6 cut(s) 57, 58, 716, 793, 839, 1092
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 3 cut(s) 301, 848, 1143
BseNI ACTGG 1 cut(s) 1072
BseRI GAGGAG 2 cut(s) 600, 1426
BseXI GCAGC 5 cut(s) 143, 538, 1037, 1052, 1195
BsgI GTGCAG 2 cut(s) 1044, 1059
Bsh1236I CGCG 1 cut(s) 220
BshFI GGCC 2 cut(s) 473, 1033
BshNI GGYRCC 1 cut(s) 729
BsiHKAI GWGCWC 1 cut(s) 915
BsiHKCI CYCGRG 1 cut(s) 322
BslFI GGGAC 2 cut(s) 346, 360
BslI CCNNNNNNNGG 6 cut(s) 57, 58, 716, 793, 839, 1092
BsmAI GTCTC 3 cut(s) 217, 419, 639
BsmFI GGGAC 2 cut(s) 346, 360
BsnI GGCC 2 cut(s) 473, 1033
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 759, 915
Bsp143I GATC 9 cut(s) 417, 454, 542, 774, 964, 987, 1065, 1132, 1258
Bsp19I CCATGG 2 cut(s) 656, 1286
BspACI CCGC 2 cut(s) 220, 843
BspANI GGCC 2 cut(s) 473, 1033
BspCNI CTCAG 3 cut(s) 300, 849, 1144
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 5 cut(s) 63, 472, 654, 731, 756
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 3 cut(s) 449, 782, 1253
BspQI GCTCTTC 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 729
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 1072
BssECI CCNNGG 2 cut(s) 656, 1286
BssMI GATC 9 cut(s) 417, 454, 542, 774, 964, 987, 1065, 1132, 1258
BssT1I CCWWGG 2 cut(s) 656, 1286
Bst2UI CCWGG 3 cut(s) 1035, 1191, 1440
Bst4CI ACNGT 4 cut(s) 374, 430, 803, 1115
Bst6I CTCTTC 3 cut(s) 486, 516, 577
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 1 cut(s) 1181
BstDEI CTNAG 6 cut(s) 287, 530, 857, 948, 1152, 1389
BstDSI CCRYGG 2 cut(s) 656, 1286
BstEII GGTNACC 1 cut(s) 1525
BstF5I GGATG 4 cut(s) 608, 666, 1408, 1492
BstFNI CGCG 1 cut(s) 220
BstKTI GATC 9 cut(s) 420, 457, 545, 777, 967, 990, 1068, 1135, 1261
BstMAI GTCTC 3 cut(s) 217, 419, 639
BstMBI GATC 9 cut(s) 417, 454, 542, 774, 964, 987, 1065, 1132, 1258
BstMWI GCNNNNNNNGC 3 cut(s) 535, 931, 1025
BstNI CCWGG 3 cut(s) 1035, 1191, 1440
BstPI GGTNACC 1 cut(s) 1525
BstSCI CCNGG 3 cut(s) 1033, 1189, 1438
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 5 cut(s) 143, 538, 1037, 1052, 1195
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 774, 987
BstYI RGATCY 2 cut(s) 774, 987
BsuI GTATCC 1 cut(s) 1293
BsuRI GGCC 2 cut(s) 473, 1033
BtgI CCRYGG 2 cut(s) 656, 1286
BtsCI GGATG 4 cut(s) 608, 666, 1408, 1492
BtsIMutI CAGTG 3 cut(s) 808, 1079, 1149
Cac8I GCNNGC 1 cut(s) 1181
Cfr13I GGNCC 2 cut(s) 471, 1056
Csp6I GTAC 4 cut(s) 258, 676, 730, 745
CviQI GTAC 4 cut(s) 258, 676, 730, 745
DdeI CTNAG 6 cut(s) 287, 530, 857, 948, 1152, 1389
DpnI GATC 9 cut(s) 419, 456, 544, 776, 966, 989, 1067, 1134, 1260
DpnII GATC 9 cut(s) 417, 454, 542, 774, 964, 987, 1065, 1132, 1258
DraIII CACNNNGTG 1 cut(s) 1423
Eam1104I CTCTTC 3 cut(s) 486, 516, 577
EarI CTCTTC 3 cut(s) 486, 516, 577
Ecl136II GAGCTC 1 cut(s) 913
Eco130I CCWWGG 2 cut(s) 656, 1286
Eco147I AGGCCT 1 cut(s) 1033
Eco24I GRGCYC 2 cut(s) 759, 915
Eco32I GATATC 2 cut(s) 348, 552
Eco47I GGWCC 1 cut(s) 1056
Eco53kI GAGCTC 1 cut(s) 913
Eco57I CTGAAG 1 cut(s) 664
Eco88I CYCGRG 1 cut(s) 322
Eco91I GGTNACC 1 cut(s) 1525
EcoICRI GAGCTC 1 cut(s) 913
EcoO65I GGTNACC 1 cut(s) 1525
EcoRI GAATTC 2 cut(s) 952, 1172
EcoRII CCWGG 3 cut(s) 1033, 1189, 1438
EcoRV GATATC 2 cut(s) 348, 552
EcoT14I CCWWGG 2 cut(s) 656, 1286
EcoT22I ATGCAT 1 cut(s) 1492
EcoT38I GRGCYC 2 cut(s) 759, 915
ErhI CCWWGG 2 cut(s) 656, 1286
FalI AAGNNNNNCTT 4 cut(s) 49, 81, 804, 836
FaqI GGGAC 2 cut(s) 346, 360
FbaI TGATCA 3 cut(s) 417, 1065, 1132
FblI GTMKAC 2 cut(s) 591, 1329
Fnu4HI GCNGC 5 cut(s) 132, 527, 1026, 1041, 1184
FokI GGATG 4 cut(s) 595, 673, 1415, 1499
FriOI GRGCYC 2 cut(s) 759, 915
Fsp4HI GCNGC 5 cut(s) 132, 527, 1026, 1041, 1184
FspBI CTAG 1 cut(s) 1007
GluI GCNGC 5 cut(s) 132, 527, 1026, 1041, 1184
GsuI CTGGAG 1 cut(s) 1173
HaeIII GGCC 2 cut(s) 473, 1033
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 8 cut(s) 123, 449, 588, 706, 938, 1166, 1223, 1457
HphI GGTGA 4 cut(s) 72, 710, 1369, 1519
Hpy166II GTNNAC 4 cut(s) 592, 701, 799, 1330
Hpy188I TCNGA 5 cut(s) 422, 454, 858, 1171, 1515
Hpy188III TCNNGA 6 cut(s) 317, 343, 682, 778, 871, 1484
Hpy8I GTNNAC 4 cut(s) 592, 701, 799, 1330
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 4 cut(s) 505, 563, 572, 1348
HpyCH4III ACNGT 4 cut(s) 374, 430, 803, 1115
HpyCH4IV ACGT 1 cut(s) 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 535, 931, 1025
HpyF3I CTNAG 6 cut(s) 287, 530, 857, 948, 1152, 1389
HpySE526I ACGT 1 cut(s) 594
KpnI GGTACC 1 cut(s) 733
Ksp22I TGATCA 3 cut(s) 417, 1065, 1132
Kzo9I GATC 9 cut(s) 417, 454, 542, 774, 964, 987, 1065, 1132, 1258
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 3 cut(s) 61, 754, 910
Lsp1109I GCAGC 5 cut(s) 143, 538, 1037, 1052, 1195
LweI GCATC 2 cut(s) 1300, 1477
MaeI CTAG 1 cut(s) 1007
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 4 cut(s) 191, 1100, 1147, 1525
MalI GATC 9 cut(s) 419, 456, 544, 776, 966, 989, 1067, 1134, 1260
MboI GATC 9 cut(s) 417, 454, 542, 774, 964, 987, 1065, 1132, 1258
MboII GAAGA 9 cut(s) 52, 159, 500, 503, 533, 594, 997, 1349, 1393
MflI RGATCY 2 cut(s) 774, 987
MhlI GDGCHC 2 cut(s) 759, 915
MluCI AATT 6 cut(s) 25, 268, 952, 1172, 1230, 1532
MlyI GAGTC 5 cut(s) 117, 458, 597, 932, 1175
Mph1103I ATGCAT 1 cut(s) 1492
MroXI GAANNNNTTC 3 cut(s) 705, 821, 1315
MseI TTAA 2 cut(s) 618, 1229
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 1043
MspR9I CCNGG 3 cut(s) 1035, 1191, 1440
MvaI CCWGG 3 cut(s) 1035, 1191, 1440
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 3 cut(s) 535, 931, 1025
NcoI CCATGG 2 cut(s) 656, 1286
NdeII GATC 9 cut(s) 417, 454, 542, 774, 964, 987, 1065, 1132, 1258
NlaIV GGNNCC 5 cut(s) 63, 472, 654, 731, 756
NmuCI GTSAC 3 cut(s) 1100, 1147, 1525
NsiI ATGCAT 1 cut(s) 1492
PceI AGGCCT 1 cut(s) 1033
PciSI GCTCTTC 1 cut(s) 516
PdmI GAANNNNTTC 3 cut(s) 705, 821, 1315
PfeI GAWTC 3 cut(s) 706, 1223, 1457
PflMI CCANNNNNTGG 1 cut(s) 839
PfoI TCCNGGA 1 cut(s) 1189
PkrI GCNGC 5 cut(s) 133, 528, 1027, 1042, 1185
PleI GAGTC 5 cut(s) 117, 457, 596, 932, 1174
PpsI GAGTC 5 cut(s) 117, 457, 596, 932, 1174
Ppu21I YACGTR 1 cut(s) 595
Psp124BI GAGCTC 1 cut(s) 915
Psp6I CCWGG 3 cut(s) 1033, 1189, 1438
PspEI GGTNACC 1 cut(s) 1525
PspGI CCWGG 3 cut(s) 1033, 1189, 1438
PspN4I GGNNCC 5 cut(s) 63, 472, 654, 731, 756
PspPI GGNCC 2 cut(s) 471, 1056
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 2 cut(s) 774, 987
PvuII CAGCTG 1 cut(s) 1043
RsaI GTAC 4 cut(s) 259, 677, 731, 746
RsaNI GTAC 4 cut(s) 258, 676, 730, 745
RseI CAYNNNNRTG 1 cut(s) 207
SacI GAGCTC 1 cut(s) 915
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 2 cut(s) 618, 1229
SatI GCNGC 5 cut(s) 132, 527, 1026, 1041, 1184
Sau3AI GATC 9 cut(s) 417, 454, 542, 774, 964, 987, 1065, 1132, 1258
Sau96I GGNCC 2 cut(s) 471, 1056
ScaI AGTACT 2 cut(s) 677, 746
SchI GAGTC 5 cut(s) 117, 458, 597, 932, 1175
ScrFI CCNGG 3 cut(s) 1035, 1191, 1440
SduI GDGCHC 2 cut(s) 759, 915
SfaNI GCATC 2 cut(s) 1300, 1477
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 1056
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 6 cut(s) 25, 268, 952, 1172, 1230, 1532
SseBI AGGCCT 1 cut(s) 1033
SsiI CCGC 2 cut(s) 220, 843
SspMI CTAG 1 cut(s) 1007
SstI GAGCTC 1 cut(s) 915
StuI AGGCCT 1 cut(s) 1033
StyD4I CCNGG 3 cut(s) 1033, 1189, 1438
StyI CCWWGG 2 cut(s) 656, 1286
TaaI ACNGT 4 cut(s) 374, 430, 803, 1115
TaiI ACGT 1 cut(s) 597
TaqI TCGA 7 cut(s) 17, 344, 519, 1207, 1221, 1257, 1496
TasI AATT 6 cut(s) 25, 268, 952, 1172, 1230, 1532
TatI WGTACW 2 cut(s) 675, 744
TfiI GAWTC 3 cut(s) 706, 1223, 1457
Tru1I TTAA 2 cut(s) 618, 1229
Tru9I TTAA 2 cut(s) 618, 1229
TscAI CASTG 3 cut(s) 808, 1079, 1156
TseFI GTSAC 3 cut(s) 1100, 1147, 1525
TseI GCWGC 5 cut(s) 131, 526, 1025, 1040, 1183
Tsp45I GTSAC 3 cut(s) 1100, 1147, 1525
TspDTI ATGAA 7 cut(s) 85, 191, 582, 825, 1150, 1367, 1394
TspRI CASTG 3 cut(s) 808, 1079, 1156
Van91I CCANNNNNTGG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 1056
XapI RAATTY 3 cut(s) 25, 952, 1172
XmiI GTMKAC 2 cut(s) 591, 1329
XmnI GAANNNNTTC 3 cut(s) 705, 821, 1315
XspI CTAG 1 cut(s) 1007
ZrmI AGTACT 2 cut(s) 677, 746
Zsp2I ATGCAT 1 cut(s) 1492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.