AT2G32170

UPF0586 protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
13666396 .. 13671754
5359 bp
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UTR
Exon/CDS
Intron
AT2G32170.2

Sequence Viewer

Length: 1515 bp
ATGGTTTCGCCGTCAGAGATGACGGAGACGGCACCGGCAATTATGACAACGGAAAGCGAAAGGATAGAGAGTTCGAGGGAACTCGTGGATAATGAAGAGGAGGAGAAAATACGCCGTCAGAAGAAGCTCGAAGAAGCTCTCGAAGCCAAATCTCTTCGCCGCATTATCAGTGCTTACCTCAATTACCCAGAGGCTTCGGAAGAGGATTTGAAAAGATGGGAAAGATCATATCGGAAGCTGTCTCCTGCACACAAGGCATTGGTACCCCATTACCCTATGAAGTTTCAGAGATTAAGAAGGTGTATATCGGCGAATTCATATTTCATATTTAATATGCTTCAGGCTTTTGAGCCTCCTATAGACTTGAGTCAGGAACTTGATGGTTGTGAAGACTCAAATCTTGACTGCGCTCCACATGAGAGATACACTCTAGATGAAAGGCACGACTCTTCTTGTCAGCCGGCCTTGACCAATAGTTGTACATATAAGGAAGAAAGCAAACACATTCGTGACCCAATAACAGGAGTGTCTATCGAGGAGCTTCAGAGGAAAGAAGCTCATGATCATTCTCCCAAGGATGACTCTGCAGACACAAGAATCAACGATAAGACATGTGATTGTCATGAAGGCCAGTTAAATCATGACCATGGCAGTGTATCATTTTCATCCCATGATTGGTTGGATTCATCGTTACAGACACATGTTCCTCTGGTTGATGTAGATAAGGTTCGTTGTATTATAAGGAATATTGTTCGAGACTGGGCAGCAGAGGGTCAGAGAGAACGAGATCAATGCTACAAGCCTATCCTTGAAGAGCTTGATTCCTTGTTTCCTGACCGTTTGAAGGAGAGCACCCCTCCTGCCTGTTTAGTCCCTGGTGCTGGACTTGGACGTCTGGCCCTTGAAATTTCTTGTCTAGGTTTCATAAGCCAAGGAAATGAATTTTCATACTACATGATGATATGCTCAAGTTTTATTCTGAATTATACACAAGTCCCTGGTGAGTGGACAATATACCCCTGGATACACAGCAACTGCAATTCGCTCTCGGACAATGATCAGCTACGCCCTATTGCGATTCCTGATATTCATCCTGCAAGTGCAGGAATAACAGAAGGTTTCTCTATGTGTGGTGGTGATTTTGTTGAAGTATACAATGAATCAAGTCATGCAGGAATGTGGGATGCAGTTGTTACTTGCTTTTTCATCGACACTGCTCATAATGTCATCGAGTACATTCAAACCATATCCAAGATCCTAAAAGATGGAGGAGTTTGGATAAATTTAGGACCTCTGTTGTATCATTTTGCGGACACATATGGCCATGAAAATGAAATGTCTATCGAGCTAAGTTTGGAGGATGTAAAGAGGGTTGCTTCACATTTTGGGTTTGTGATCGAGAAAGAAAGAACAATTGAAACAACTTACACTACAAATCCCCGGGCTATGATGCAGAACCGATACTATACTGCCTTCTGGACAATGAGGAAGAAATGTGCTATAACAACAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

504

Amino Acids

57.71

Weight (kDa)

5.1

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 292 - 565 3.9e-108 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012063)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 740
AasI GACNNNNNNGTC 1 cut(s) 891
AatII GACGTC 1 cut(s) 895
Acc65I GGTACC 1 cut(s) 262
AccB1I GGYRCC 2 cut(s) 31, 262
AccI GTMKAC 1 cut(s) 1152
AciI CCGC 2 cut(s) 160, 1310
AclWI GGATC 1 cut(s) 1249
AcoI YGGCCR 1 cut(s) 1321
AcsI RAATTY 4 cut(s) 313, 906, 941, 1282
AcuI CTGAAG 2 cut(s) 323, 527
AcyI GRCGYC 1 cut(s) 892
AfaI GTAC 3 cut(s) 264, 481, 1235
AfiI CCNNNNNNNGG 4 cut(s) 521, 675, 844, 881
AflIII ACRYGT 2 cut(s) 611, 700
AgsI TTSAA 7 cut(s) 211, 812, 844, 905, 1148, 1241, 1418
AjnI CCWGG 3 cut(s) 874, 997, 1019
AleI CACNNNNGTG 1 cut(s) 507
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 8 cut(s) 127, 137, 238, 541, 557, 817, 1063, 1348
AluI AGCT 8 cut(s) 127, 137, 238, 541, 557, 817, 1063, 1348
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 3 cut(s) 20, 246, 750
AlwI GGATC 1 cut(s) 1249
AlwNI CAGNNNCTG 1 cut(s) 1035
Ama87I CYCGRG 1 cut(s) 1440
AoxI GGCC 4 cut(s) 462, 628, 897, 1321
ApeKI GCWGC 1 cut(s) 764
ApoI RAATTY 4 cut(s) 313, 906, 941, 1282
Asp718I GGTACC 1 cut(s) 262
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 2 cut(s) 898, 1289
AsuC2I CCSGG 2 cut(s) 1441, 1442
AsuHPI GGTGA 2 cut(s) 1013, 1148
AvaI CYCGRG 1 cut(s) 1440
AvaII GGWCC 1 cut(s) 1289
BalI TGGCCA 1 cut(s) 1323
BanI GGYRCC 2 cut(s) 31, 262
BauI CACGAG 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 854
BbvI GCAGC 1 cut(s) 776
BccI CCATC 3 cut(s) 210, 374, 1259
BceAI ACGGC 2 cut(s) 45, 99
BcgI CGANNNNNNTGC 2 cut(s) 774, 808
BciT130I CCWGG 3 cut(s) 876, 999, 1021
BciVI GTATCC 1 cut(s) 1017
BclI TGATCA 2 cut(s) 562, 1057
BcnI CCSGG 2 cut(s) 1441, 1442
BcoDI GTCTC 3 cut(s) 20, 246, 750
BfaI CTAG 2 cut(s) 431, 917
BfmI CTRYAG 2 cut(s) 357, 585
BfuI GTATCC 1 cut(s) 1017
BisI GCNGC 2 cut(s) 160, 765
BlsI GCNGC 2 cut(s) 161, 766
Bme1390I CCNGG 5 cut(s) 876, 999, 1021, 1441, 1442
Bme18I GGWCC 1 cut(s) 1289
BmeT110I CYCGRG 1 cut(s) 1440
BmgT120I GGNCC 2 cut(s) 898, 1289
BmiI GGNNCC 2 cut(s) 33, 264
BmrFI CCNGG 5 cut(s) 876, 999, 1021, 1441, 1442
BmrI ACTGGG 1 cut(s) 769
BmsI GCATC 2 cut(s) 1174, 1440
BmuI ACTGGG 1 cut(s) 769
BoxI GACNNNNGTC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 396
BplI GAGNNNNNCTC 4 cut(s) 412, 444, 841, 873
BpuEI CTTGAG 2 cut(s) 385, 952
BpuMI CCSGG 2 cut(s) 1441, 1442
BsaBI GATNNNNATC 1 cut(s) 1089
BsaHI GRCGYC 1 cut(s) 892
BsaJI CCNNGG 8 cut(s) 573, 646, 874, 931, 997, 1019, 1439, 1440
Bsc4I CCNNNNNNNGG 4 cut(s) 521, 675, 844, 881
Bse118I RCCGGY 2 cut(s) 34, 460
Bse1I ACTGG 2 cut(s) 631, 764
Bse8I GATNNNNATC 1 cut(s) 1089
BseBI CCWGG 3 cut(s) 876, 999, 1021
BseDI CCNNGG 8 cut(s) 573, 646, 874, 931, 997, 1019, 1439, 1440
BseGI GGATG 5 cut(s) 583, 665, 1090, 1189, 1366
BseJI GATNNNNATC 1 cut(s) 1089
BseLI CCNNNNNNNGG 4 cut(s) 521, 675, 844, 881
BseNI ACTGG 2 cut(s) 631, 764
BseRI GAGGAG 4 cut(s) 113, 116, 551, 1284
BseXI GCAGC 1 cut(s) 776
BsgI GTGCAG 2 cut(s) 231, 1122
BshFI GGCC 4 cut(s) 464, 630, 899, 1323
BshNI GGYRCC 2 cut(s) 31, 262
BsiHKAI GWGCWC 1 cut(s) 854
BsiHKCI CYCGRG 1 cut(s) 1440
BsiSI CCGG 3 cut(s) 35, 461, 1441
BslFI GGGAC 2 cut(s) 857, 980
BslI CCNNNNNNNGG 4 cut(s) 521, 675, 844, 881
BsmAI GTCTC 3 cut(s) 20, 246, 750
BsmBI CGTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 857, 980
BsnI GGCC 4 cut(s) 464, 630, 899, 1323
BsoBI CYCGRG 1 cut(s) 1440
Bsp1286I GDGCHC 1 cut(s) 854
Bsp1407I TGTACA 1 cut(s) 479
Bsp143I GATC 6 cut(s) 224, 562, 787, 1057, 1254, 1395
Bsp19I CCATGG 1 cut(s) 646
BspACI CCGC 2 cut(s) 160, 1310
BspANI GGCC 4 cut(s) 464, 630, 899, 1323
BspHI TCATGA 3 cut(s) 559, 622, 640
BspLI GGNNCC 2 cut(s) 33, 264
BspMAI CTGCAG 1 cut(s) 589
BspPI GGATC 1 cut(s) 1249
BspQI GCTCTTC 1 cut(s) 807
BspT107I GGYRCC 2 cut(s) 31, 262
BsrFI RCCGGY 2 cut(s) 34, 460
BsrGI TGTACA 1 cut(s) 479
BsrI ACTGG 2 cut(s) 631, 764
BssAI RCCGGY 2 cut(s) 34, 460
BssECI CCNNGG 8 cut(s) 573, 646, 874, 931, 997, 1019, 1439, 1440
BssMI GATC 6 cut(s) 224, 562, 787, 1057, 1254, 1395
BssNAI GTATAC 1 cut(s) 1153
BssNI GRCGYC 1 cut(s) 892
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 3 cut(s) 573, 646, 931
Bst1107I GTATAC 1 cut(s) 1153
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 3 cut(s) 876, 999, 1021
Bst4CI ACNGT 1 cut(s) 839
Bst6I CTCTTC 5 cut(s) 90, 159, 195, 454, 807
BstACI GRCGYC 1 cut(s) 892
BstAUI TGTACA 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 1349
BstDSI CCRYGG 1 cut(s) 646
BstF5I GGATG 5 cut(s) 583, 665, 1090, 1189, 1366
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 6 cut(s) 227, 565, 790, 1060, 1257, 1398
BstMAI GTCTC 3 cut(s) 20, 246, 750
BstMBI GATC 6 cut(s) 224, 562, 787, 1057, 1254, 1395
BstMWI GCNNNNNNNGC 2 cut(s) 143, 254
BstNI CCWGG 3 cut(s) 876, 999, 1021
BstNSI RCATGY 2 cut(s) 615, 704
BstPAI GACNNNNGTC 1 cut(s) 366
BstSCI CCNGG 5 cut(s) 874, 997, 1019, 1439, 1440
BstSFI CTRYAG 2 cut(s) 357, 585
BstV1I GCAGC 1 cut(s) 776
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 1254
BstYI RGATCY 1 cut(s) 1254
BstZ17I GTATAC 1 cut(s) 1153
BsuI GTATCC 1 cut(s) 1017
BsuRI GGCC 4 cut(s) 464, 630, 899, 1323
BtgI CCRYGG 1 cut(s) 646
BtsCI GGATG 5 cut(s) 583, 665, 1090, 1189, 1366
BtsI GCAGTG 2 cut(s) 658, 1212
BtsIMutI CAGTG 3 cut(s) 175, 658, 1212
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 1 cut(s) 1035
CciI TCATGA 3 cut(s) 559, 622, 640
CfoI GCGC 1 cut(s) 410
Cfr10I RCCGGY 2 cut(s) 34, 460
Cfr13I GGNCC 2 cut(s) 898, 1289
Cfr9I CCCGGG 1 cut(s) 1440
Csp6I GTAC 3 cut(s) 263, 480, 1234
CviQI GTAC 3 cut(s) 263, 480, 1234
DdeI CTNAG 1 cut(s) 1349
DpnI GATC 6 cut(s) 226, 564, 789, 1059, 1256, 1397
DpnII GATC 6 cut(s) 224, 562, 787, 1057, 1254, 1395
DrdI GACNNNNNNGTC 1 cut(s) 891
DseDI GACNNNNNNGTC 1 cut(s) 891
EaeI YGGCCR 1 cut(s) 1321
Eam1104I CTCTTC 5 cut(s) 90, 159, 195, 454, 807
EarI CTCTTC 5 cut(s) 90, 159, 195, 454, 807
Eco130I CCWWGG 3 cut(s) 573, 646, 931
Eco47I GGWCC 1 cut(s) 1289
Eco57I CTGAAG 2 cut(s) 323, 527
Eco88I CYCGRG 1 cut(s) 1440
EcoO109I RGGNCCY 1 cut(s) 1289
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 3 cut(s) 874, 997, 1019
EcoT14I CCWWGG 3 cut(s) 573, 646, 931
ErhI CCWWGG 3 cut(s) 573, 646, 931
Esp3I CGTCTC 1 cut(s) 20
FaqI GGGAC 2 cut(s) 857, 980
FauNDI CATATG 1 cut(s) 1318
FbaI TGATCA 2 cut(s) 562, 1057
FblI GTMKAC 1 cut(s) 1152
Fnu4HI GCNGC 2 cut(s) 160, 765
FokI GGATG 5 cut(s) 590, 652, 1077, 1196, 1373
Fsp4HI GCNGC 2 cut(s) 160, 765
FspBI CTAG 2 cut(s) 431, 917
GlaI GCGC 1 cut(s) 409
GluI GCNGC 2 cut(s) 160, 765
HaeIII GGCC 4 cut(s) 464, 630, 899, 1323
HapII CCGG 3 cut(s) 35, 461, 1441
HhaI GCGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 892
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HinfI GANTC 9 cut(s) 367, 392, 446, 581, 597, 683, 821, 1078, 1160
HpaII CCGG 3 cut(s) 35, 461, 1441
HphI GGTGA 2 cut(s) 1013, 1148
Hpy166II GTNNAC 2 cut(s) 1008, 1153
Hpy188I TCNGA 9 cut(s) 16, 120, 199, 234, 288, 546, 777, 981, 1051
Hpy8I GTNNAC 2 cut(s) 1008, 1153
HpyAV CCTTC 5 cut(s) 291, 620, 838, 1109, 1483
HpyCH4III ACNGT 1 cut(s) 839
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 8 cut(s) 248, 587, 1038, 1097, 1103, 1172, 1187, 1453
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 254
HpyF3I CTNAG 1 cut(s) 1349
HpySE526I ACGT 1 cut(s) 892
Hsp92I GRCGYC 1 cut(s) 892
HspAI GCGC 1 cut(s) 408
KpnI GGTACC 1 cut(s) 266
KroI GCCGGC 1 cut(s) 460
KroNI GCCGGC 1 cut(s) 462
Ksp22I TGATCA 2 cut(s) 562, 1057
Kzo9I GATC 6 cut(s) 224, 562, 787, 1057, 1254, 1395
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 2 cut(s) 415, 538
Lsp1109I GCAGC 1 cut(s) 776
LweI GCATC 2 cut(s) 1174, 1440
MaeI CTAG 2 cut(s) 431, 917
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 3 cut(s) 509, 690, 1192
MalI GATC 6 cut(s) 226, 564, 789, 1059, 1256, 1397
MboI GATC 6 cut(s) 224, 562, 787, 1057, 1254, 1395
MfeI CAATTG 1 cut(s) 1413
MflI RGATCY 1 cut(s) 1254
MhlI GDGCHC 1 cut(s) 854
MlsI TGGCCA 1 cut(s) 1323
MluCI AATT 9 cut(s) 39, 181, 313, 906, 941, 982, 1039, 1282, 1413
MluNI TGGCCA 1 cut(s) 1323
MlyI GAGTC 4 cut(s) 376, 386, 440, 575
MmeI TCCRAC 1 cut(s) 660
Mox20I TGGCCA 1 cut(s) 1323
MroNI GCCGGC 1 cut(s) 460
MscI TGGCCA 1 cut(s) 1323
MseI TTAA 4 cut(s) 293, 330, 635, 1513
MslI CAYNNNNRTG 4 cut(s) 507, 645, 651, 1329
Msp20I TGGCCA 1 cut(s) 1323
MspI CCGG 3 cut(s) 35, 461, 1441
MspR9I CCNGG 5 cut(s) 876, 999, 1021, 1441, 1442
MunI CAATTG 1 cut(s) 1413
MvaI CCWGG 3 cut(s) 876, 999, 1021
MwoI GCNNNNNNNGC 2 cut(s) 143, 254
NaeI GCCGGC 1 cut(s) 462
NciI CCSGG 2 cut(s) 1441, 1442
NcoI CCATGG 1 cut(s) 646
NdeI CATATG 1 cut(s) 1318
NdeII GATC 6 cut(s) 224, 562, 787, 1057, 1254, 1395
NgoMIV GCCGGC 1 cut(s) 460
NlaIV GGNNCC 2 cut(s) 33, 264
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 2 cut(s) 615, 704
OliI CACNNNNGTG 1 cut(s) 507
PagI TCATGA 3 cut(s) 559, 622, 640
PciI ACATGT 2 cut(s) 611, 700
PciSI GCTCTTC 1 cut(s) 807
PdiI GCCGGC 1 cut(s) 462
PfeI GAWTC 5 cut(s) 597, 683, 821, 1078, 1160
PkrI GCNGC 2 cut(s) 161, 766
PleI GAGTC 4 cut(s) 375, 386, 440, 575
PpsI GAGTC 4 cut(s) 375, 386, 440, 575
PpuMI RGGWCCY 1 cut(s) 1289
PscI ACATGT 2 cut(s) 611, 700
PshAI GACNNNNGTC 1 cut(s) 366
PsiI TTATAA 1 cut(s) 740
Psp5II RGGWCCY 1 cut(s) 1289
Psp6I CCWGG 3 cut(s) 874, 997, 1019
PspGI CCWGG 3 cut(s) 874, 997, 1019
PspN4I GGNNCC 2 cut(s) 33, 264
PspPI GGNCC 2 cut(s) 898, 1289
PspPPI RGGWCCY 1 cut(s) 1289
PsrI GAACNNNNNNTAC 2 cut(s) 711, 743
PstI CTGCAG 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 1035
PsuI RGATCY 1 cut(s) 1254
RsaI GTAC 3 cut(s) 264, 481, 1235
RsaNI GTAC 3 cut(s) 263, 480, 1234
RseI CAYNNNNRTG 4 cut(s) 507, 645, 651, 1329
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 4 cut(s) 293, 330, 635, 1513
SatI GCNGC 2 cut(s) 160, 765
Sau3AI GATC 6 cut(s) 224, 562, 787, 1057, 1254, 1395
Sau96I GGNCC 2 cut(s) 898, 1289
SchI GAGTC 4 cut(s) 376, 386, 440, 575
ScrFI CCNGG 5 cut(s) 876, 999, 1021, 1441, 1442
SduI GDGCHC 1 cut(s) 854
SfaNI GCATC 2 cut(s) 1174, 1440
SfcI CTRYAG 2 cut(s) 357, 585
SinI GGWCC 1 cut(s) 1289
SmaI CCCGGG 1 cut(s) 1442
SmiMI CAYNNNNRTG 4 cut(s) 507, 645, 651, 1329
SmlI CTYRAG 2 cut(s) 364, 967
SmoI CTYRAG 2 cut(s) 364, 967
Sse9I AATT 9 cut(s) 39, 181, 313, 906, 941, 982, 1039, 1282, 1413
SsiI CCGC 2 cut(s) 160, 1310
SspI AATATT 1 cut(s) 748
SspMI CTAG 2 cut(s) 431, 917
StyD4I CCNGG 5 cut(s) 874, 997, 1019, 1439, 1440
StyI CCWWGG 3 cut(s) 573, 646, 931
TaaI ACNGT 1 cut(s) 839
TaiI ACGT 1 cut(s) 895
TaqI TCGA 9 cut(s) 74, 129, 141, 534, 754, 1209, 1230, 1344, 1398
TasI AATT 9 cut(s) 39, 181, 313, 906, 941, 982, 1039, 1282, 1413
TatI WGTACW 2 cut(s) 479, 1233
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 5 cut(s) 597, 683, 821, 1078, 1160
Tru1I TTAA 4 cut(s) 293, 330, 635, 1513
Tru9I TTAA 4 cut(s) 293, 330, 635, 1513
TscAI CASTG 3 cut(s) 175, 658, 1219
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 1 cut(s) 764
Tsp45I GTSAC 1 cut(s) 509
TspGWI ACGGA 2 cut(s) 38, 65
TspMI CCCGGG 1 cut(s) 1440
TspRI CASTG 3 cut(s) 175, 658, 1219
VpaK11BI GGWCC 1 cut(s) 1289
XapI RAATTY 4 cut(s) 313, 906, 941, 1282
XbaI TCTAGA 1 cut(s) 430
XceI RCATGY 2 cut(s) 615, 704
XmaI CCCGGG 1 cut(s) 1440
XmiI GTMKAC 1 cut(s) 1152
XspI CTAG 2 cut(s) 431, 917
ZraI GACGTC 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.