Rh2BG516700

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012063
Physical Location & Seq
Reverse (-)
72489371 .. 72497797
8427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG516700.1

Sequence Viewer

Length: 1536 bp
ATGTCAGTCCCAATGAACGAGACTCTGATTCTCCGAAGAGAAGAAGAAGAAGACGACGAGGAACGACGTCGTCAAAGGAAGCTCGAAGAAGCCCTAGAAATCAAATCTCTCAGGCGCATCATCAGCGCCTACCTCAACTATCCGGAGGCTGCAGAAGAGGACGTGAGAAGATATGAAAGATCTTTTAAAATGCTTCCACTAGCCCATAAGGCTCTACTGTCTCACTACCCTTCTAAGTTTGAAAGACTAAGACGGTGTATTTCTGCCAATTCATATTTCATTTTCGATATGCTTCAGGAATTTGAACCCCCACTTGATTTGAGCCAGGATGTAGATGTTTGTGATGGCCTACATCTTGAAAACATCCCATCTGATCATGATGATTCTAGAGTAACAAATTGCTCTTCTCAATCAACCTCCGCAAGTCAAAGTGTGCGTGTCTCCGAATCTGATCATTCCTGTCTGGGTCTGGTGGAAGGGAGCAACAGAGTCTGCAATTCACCAGTAGGGGTGAGTACCAATAAGGAGGAGAAGCATGAAGGTCATGCTGAGTCCATCAATGGGAATCACACTTTAAGCTTGGAATATACCAAACAGATACATAATTGTCATGCGAATAATGCCATTGATTCCAATGGAAATGTGTCCTCAACAATGCGCACGTGGTTGGATCCATCAATTCAATTACATGTTCCATTAGTTGATGTTGATAAGGTTCGATGTATTATACGGAACATAGTTAGAGACTGGGCAGCAGAGGGTCAGAAAGAACGTGATCAATGCTACAGGCCTATACTTGAAGAACTTGATTCACTATTTGTTGATCGCTGTAAGGAAAGCCCTCCTGCCTGTTTAGTTCCTGGTGCTGGACTTGGGCGGCTTGCATTGGAGATCTCATGTCGAGGTTTCATTAGCCAGGGAAATGAATTTTCATACTACATGATGATATGCTCAAGTTTTATTCTCAATGTTTGTCAAACTGCTGGGGAGTGGACAATATATCCGTGGATCCACAGCAATTGTAATTCACTTTCAGATGATGACCAACTTCGTCCCGTTTCAATACCAGATATTCATCCTGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAACGATCCAAGCCAAGTAGGTGCTTGGGATGCAGTTGTGACCTGTTTCTTTATTGATACGGCACACAACATTGTTGAATACATTGAAATCATATCAAGAATCTTGAAAGAAGGAGGCGTTTGGATAAATATGGGTCCCCTACTATATCACTTTGCAGATGTATATGGACAAGGAGATGATATGTCTATTGAACTGAGTTTGGAGGATGTGAAGAGGGTTGCTTTGTATTATGGATTTCATATAGAGAAGGAAAAGACCATTGAGACAACCTACACTACAAATCCCAGATCAATGATGCAAGTAAGTATCCCCAAGAGCCCAAGTACTGAAGCTTTTCCTTTTTTCTTTTTTGTCCCTCTTTTATTGTATCAGATCTTTGTATTTTTTTATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

511

Amino Acids

58.13

Weight (kDa)

4.91

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 228 - 481 2.5e-106 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32170 AT2G32170
fragaria_vesca FvH4_6g39770 FvH4_6g39770
malus_domestica MD09G1136900.v1.1 MD17G1127100.v1.1
prunus_persica Prupe.3G188100_v2.0.a1
pyrus_communis pycom09g05780 pycom17g11940
rosa_chinensis RchiOBHm_Chr2g0153881
rosa_laevigata RLG00000020736
rosa_multiflora Rmu_sc0003887.1_g000010
rosa_roxburghii Rroxscaffold_2G00094680
rosa_rugosa Rorug02G0443000
rosa_samantha Rh2AG506700 Rh2BG516700 Rh2CG492400 Rh2DG528800
rosa_wichuraiana Rw2G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1140
AatII GACGTC 1 cut(s) 70
Acc16I TGCGCA 1 cut(s) 659
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 3 cut(s) 420, 877, 1119
AclWI GGATC 5 cut(s) 665, 678, 1003, 1016, 1139
AcsI RAATTY 2 cut(s) 299, 926
AcuI CTGAAG 3 cut(s) 278, 1119, 1488
AcvI CACGTG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 2 cut(s) 517, 1465
AfiI CCNNNNNNNGG 2 cut(s) 561, 866
AflIII ACRYGT 1 cut(s) 688
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 3 cut(s) 324, 859, 915
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 3 cut(s) 82, 579, 1472
AluI AGCT 3 cut(s) 82, 579, 1472
Alw26I GTCTC 5 cut(s) 14, 225, 445, 738, 1397
AlwI GGATC 5 cut(s) 665, 678, 1003, 1016, 1139
AlwNI CAGNNNCTG 1 cut(s) 492
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 2 cut(s) 346, 788
ApeKI GCWGC 2 cut(s) 149, 752
ApoI RAATTY 2 cut(s) 299, 926
Asp700I GAANNNNTTC 1 cut(s) 1473
AspLEI GCGC 3 cut(s) 117, 128, 660
AspS9I GGNCC 1 cut(s) 1274
AsuHPI GGTGA 3 cut(s) 492, 523, 1133
AvaII GGWCC 1 cut(s) 1274
BamHI GGATCC 2 cut(s) 670, 1008
BanII GRGCYC 1 cut(s) 1460
BbrPI CACGTG 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 136, 764
BccI CCATC 4 cut(s) 338, 376, 563, 682
BceAI ACGGC 1 cut(s) 1215
BciT130I CCWGG 3 cut(s) 326, 861, 917
BciVI GTATCC 1 cut(s) 1457
BclI TGATCA 3 cut(s) 373, 451, 775
BcoDI GTCTC 5 cut(s) 14, 225, 445, 738, 1397
BfaI CTAG 4 cut(s) 95, 200, 387, 1083
BfmI CTRYAG 2 cut(s) 150, 784
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 1457
BglI GCCNNNNNGGC 1 cut(s) 209
BglII AGATCT 3 cut(s) 179, 891, 1512
BisI GCNGC 3 cut(s) 150, 753, 878
BlsI GCNGC 3 cut(s) 151, 754, 879
BmcAI AGTACT 1 cut(s) 1465
Bme1390I CCNGG 3 cut(s) 326, 861, 917
Bme18I GGWCC 1 cut(s) 1274
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 1274
BmiI GGNNCC 4 cut(s) 672, 1010, 1275, 1276
BmrFI CCNGG 3 cut(s) 326, 861, 917
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 3 cut(s) 126, 1159, 1425
BmuI ACTGGG 1 cut(s) 757
BpiI GAAGAC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 937
BsaAI YACGTR 1 cut(s) 663
BsaBI GATNNNNATC 1 cut(s) 1074
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 2 cut(s) 916, 1004
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 561, 866
Bse1I ACTGG 2 cut(s) 503, 752
Bse8I GATNNNNATC 1 cut(s) 1074
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 3 cut(s) 326, 861, 917
BseDI CCNNGG 2 cut(s) 916, 1004
BseGI GGATG 5 cut(s) 334, 363, 1075, 1174, 1351
BseJI GATNNNNATC 1 cut(s) 1074
BseLI CCNNNNNNNGG 2 cut(s) 561, 866
BseMII CTCAG 3 cut(s) 124, 540, 1325
BseNI ACTGG 2 cut(s) 503, 752
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 2 cut(s) 136, 764
BseYI CCCAGC 1 cut(s) 983
BsgI GTGCAG 1 cut(s) 1107
BshFI GGCC 2 cut(s) 348, 790
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 3 cut(s) 1038, 1260, 1478
BslI CCNNNNNNNGG 2 cut(s) 561, 866
BsmAI GTCTC 5 cut(s) 14, 225, 445, 738, 1397
BsmFI GGGAC 3 cut(s) 1038, 1260, 1478
BsnI GGCC 2 cut(s) 348, 790
Bsp1286I GDGCHC 1 cut(s) 1460
Bsp13I TCCGGA 1 cut(s) 142
BspACI CCGC 3 cut(s) 420, 877, 1119
BspANI GGCC 2 cut(s) 348, 790
BspCNI CTCAG 3 cut(s) 123, 541, 1326
BspEI TCCGGA 1 cut(s) 142
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 4 cut(s) 672, 1010, 1275, 1276
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 5 cut(s) 665, 678, 1003, 1016, 1139
BspQI GCTCTTC 1 cut(s) 409
BsrI ACTGG 2 cut(s) 503, 752
BssECI CCNNGG 2 cut(s) 916, 1004
BssNI GRCGYC 1 cut(s) 67
Bst2UI CCWGG 3 cut(s) 326, 861, 917
Bst4CI ACNGT 2 cut(s) 219, 255
Bst6I CTCTTC 4 cut(s) 31, 150, 409, 1346
BstACI GRCGYC 1 cut(s) 67
BstBAI YACGTR 1 cut(s) 663
BstC8I GCNNGC 1 cut(s) 882
BstDEI CTNAG 5 cut(s) 110, 234, 248, 549, 1334
BstDSI CCRYGG 1 cut(s) 1004
BstF5I GGATG 5 cut(s) 334, 363, 1075, 1174, 1351
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 3 cut(s) 117, 128, 660
BstMAI GTCTC 5 cut(s) 14, 225, 445, 738, 1397
BstMWI GCNNNNNNNGC 4 cut(s) 123, 209, 620, 1169
BstNI CCWGG 3 cut(s) 326, 861, 917
BstNSI RCATGY 1 cut(s) 692
BstSCI CCNGG 3 cut(s) 324, 859, 915
BstSFI CTRYAG 2 cut(s) 150, 784
BstV1I GCAGC 2 cut(s) 136, 764
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 5 cut(s) 179, 670, 891, 1008, 1512
BstYI RGATCY 5 cut(s) 179, 670, 891, 1008, 1512
BsuI GTATCC 1 cut(s) 1457
BsuRI GGCC 2 cut(s) 348, 790
BtgI CCRYGG 1 cut(s) 1004
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 5 cut(s) 334, 363, 1075, 1174, 1351
Cac8I GCNNGC 1 cut(s) 882
CaiI CAGNNNCTG 1 cut(s) 492
CciI TCATGA 1 cut(s) 376
CfoI GCGC 3 cut(s) 117, 128, 660
Cfr13I GGNCC 1 cut(s) 1274
Csp6I GTAC 2 cut(s) 516, 1464
CspCI CAANNNNNGTGG 4 cut(s) 300, 335, 1001, 1036
CviAII CATG 7 cut(s) 377, 536, 545, 611, 689, 897, 940
CviQI GTAC 2 cut(s) 516, 1464
DdeI CTNAG 5 cut(s) 110, 234, 248, 549, 1334
DraI TTTAAA 1 cut(s) 187
Eam1104I CTCTTC 4 cut(s) 31, 150, 409, 1346
EarI CTCTTC 4 cut(s) 31, 150, 409, 1346
Eco147I AGGCCT 1 cut(s) 790
Eco24I GRGCYC 1 cut(s) 1460
Eco47I GGWCC 1 cut(s) 1274
Eco57I CTGAAG 3 cut(s) 278, 1119, 1488
Eco72I CACGTG 1 cut(s) 663
EcoO109I RGGNCCY 1 cut(s) 1274
EcoRII CCWGG 3 cut(s) 324, 859, 915
EcoT38I GRGCYC 1 cut(s) 1460
FaeI CATG 7 cut(s) 380, 539, 548, 614, 692, 900, 943
FaqI GGGAC 3 cut(s) 1038, 1260, 1478
FatI CATG 7 cut(s) 376, 535, 544, 610, 688, 896, 939
FbaI TGATCA 3 cut(s) 373, 451, 775
Fnu4HI GCNGC 3 cut(s) 150, 753, 878
FokI GGATG 5 cut(s) 341, 350, 1062, 1181, 1358
FriOI GRGCYC 1 cut(s) 1460
Fsp4HI GCNGC 3 cut(s) 150, 753, 878
FspAI RTGCGCAY 1 cut(s) 659
FspBI CTAG 4 cut(s) 95, 200, 387, 1083
FspI TGCGCA 1 cut(s) 659
GlaI GCGC 3 cut(s) 116, 127, 659
GluI GCNGC 3 cut(s) 150, 753, 878
GsaI CCCAGC 1 cut(s) 987
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 348, 790
HapII CCGG 1 cut(s) 143
HhaI GCGC 3 cut(s) 117, 128, 660
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 7 cut(s) 380, 539, 548, 614, 692, 900, 943
Hin6I GCGC 3 cut(s) 115, 126, 658
HinP1I GCGC 3 cut(s) 115, 126, 658
HindIII AAGCTT 2 cut(s) 577, 1470
HpaII CCGG 1 cut(s) 143
HphI GGTGA 3 cut(s) 492, 523, 1133
Hpy166II GTNNAC 1 cut(s) 993
Hpy188I TCNGA 8 cut(s) 27, 35, 373, 445, 451, 765, 1036, 1512
Hpy188III TCNNGA 7 cut(s) 143, 296, 356, 377, 387, 1236, 1243
Hpy8I GTNNAC 1 cut(s) 993
Hpy99I CGWCG 3 cut(s) 59, 69, 72
HpyAV CCTTC 6 cut(s) 240, 470, 533, 1094, 1244, 1381
HpyCH4III ACNGT 2 cut(s) 219, 255
HpyCH4IV ACGT 4 cut(s) 67, 162, 662, 772
HpyCH4V TGCA 7 cut(s) 152, 495, 884, 1088, 1172, 1295, 1438
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 209, 620, 1169
HpyF3I CTNAG 5 cut(s) 110, 234, 248, 549, 1334
HpySE526I ACGT 4 cut(s) 67, 162, 662, 772
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 7 cut(s) 380, 539, 548, 614, 692, 900, 943
HspAI GCGC 3 cut(s) 115, 126, 658
KflI GGGWCCC 1 cut(s) 1274
Kpn2I TCCGGA 1 cut(s) 142
Ksp22I TGATCA 3 cut(s) 373, 451, 775
LguI GCTCTTC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 2 cut(s) 136, 764
LweI GCATC 3 cut(s) 126, 1159, 1425
MaeI CTAG 4 cut(s) 95, 200, 387, 1083
MaeII ACGT 4 cut(s) 67, 162, 662, 772
MaeIII GTNAC 3 cut(s) 391, 1121, 1177
MfeI CAATTG 1 cut(s) 1018
MflI RGATCY 5 cut(s) 179, 670, 891, 1008, 1512
MhlI GDGCHC 1 cut(s) 1460
MlyI GAGTC 3 cut(s) 16, 498, 560
MmeI TCCRAC 1 cut(s) 648
MroI TCCGGA 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 1473
MseI TTAA 2 cut(s) 186, 575
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 3 cut(s) 326, 861, 917
MunI CAATTG 1 cut(s) 1018
MvaI CCWGG 3 cut(s) 326, 861, 917
MwoI GCNNNNNNNGC 4 cut(s) 123, 209, 620, 1169
NlaIII CATG 7 cut(s) 380, 539, 548, 614, 692, 900, 943
NlaIV GGNNCC 4 cut(s) 672, 1010, 1275, 1276
NmuCI GTSAC 2 cut(s) 1121, 1177
NsbI TGCGCA 1 cut(s) 659
NspI RCATGY 1 cut(s) 692
PagI TCATGA 1 cut(s) 376
PceI AGGCCT 1 cut(s) 790
PciI ACATGT 1 cut(s) 688
PciSI GCTCTTC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 1473
PfeI GAWTC 7 cut(s) 28, 383, 446, 565, 629, 809, 1239
PflFI GACNNNGTC 1 cut(s) 69
PkrI GCNGC 3 cut(s) 151, 754, 879
PleI GAGTC 3 cut(s) 16, 497, 559
PmaCI CACGTG 1 cut(s) 663
PmlI CACGTG 1 cut(s) 663
PpsI GAGTC 3 cut(s) 16, 497, 559
Ppu21I YACGTR 1 cut(s) 663
PpuMI RGGWCCY 1 cut(s) 1274
PscI ACATGT 1 cut(s) 688
PsiI TTATAA 1 cut(s) 1140
Psp5II RGGWCCY 1 cut(s) 1274
Psp6I CCWGG 3 cut(s) 324, 859, 915
PspCI CACGTG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 983
PspGI CCWGG 3 cut(s) 324, 859, 915
PspN4I GGNNCC 4 cut(s) 672, 1010, 1275, 1276
PspPI GGNCC 1 cut(s) 1274
PspPPI RGGWCCY 1 cut(s) 1274
PstI CTGCAG 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 492
PsuI RGATCY 5 cut(s) 179, 670, 891, 1008, 1512
PsyI GACNNNGTC 1 cut(s) 69
RsaI GTAC 2 cut(s) 517, 1465
RsaNI GTAC 2 cut(s) 516, 1464
SapI GCTCTTC 1 cut(s) 409
SaqAI TTAA 2 cut(s) 186, 575
SatI GCNGC 3 cut(s) 150, 753, 878
Sau96I GGNCC 1 cut(s) 1274
ScaI AGTACT 1 cut(s) 1465
SchI GAGTC 3 cut(s) 16, 498, 560
ScrFI CCNGG 3 cut(s) 326, 861, 917
SduI GDGCHC 1 cut(s) 1460
SfaNI GCATC 3 cut(s) 126, 1159, 1425
SfcI CTRYAG 2 cut(s) 150, 784
SinI GGWCC 1 cut(s) 1274
SmlI CTYRAG 1 cut(s) 952
SmoI CTYRAG 1 cut(s) 952
SseBI AGGCCT 1 cut(s) 790
SsiI CCGC 3 cut(s) 420, 877, 1119
SspMI CTAG 4 cut(s) 95, 200, 387, 1083
StuI AGGCCT 1 cut(s) 790
StyD4I CCNGG 3 cut(s) 324, 859, 915
TaaI ACNGT 2 cut(s) 219, 255
TaiI ACGT 4 cut(s) 70, 165, 665, 775
TaqI TCGA 4 cut(s) 84, 285, 718, 901
TatI WGTACW 1 cut(s) 1463
TauI GCSGC 1 cut(s) 880
TfiI GAWTC 7 cut(s) 28, 383, 446, 565, 629, 809, 1239
Tru1I TTAA 2 cut(s) 186, 575
Tru9I TTAA 2 cut(s) 186, 575
TseFI GTSAC 2 cut(s) 1121, 1177
TseI GCWGC 2 cut(s) 149, 752
Tsp45I GTSAC 2 cut(s) 1121, 1177
TspGWI ACGGA 2 cut(s) 745, 993
Tth111I GACNNNGTC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 1274
XapI RAATTY 2 cut(s) 299, 926
XbaI TCTAGA 1 cut(s) 386
XceI RCATGY 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 1473
XspI CTAG 4 cut(s) 95, 200, 387, 1083
ZraI GACGTC 1 cut(s) 68
ZrmI AGTACT 1 cut(s) 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.