MD17G1127100.v1.1

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012063
Physical Location & Seq
Forward (+)
11150997 .. 11156253
5257 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1127100.v1.1.491

Sequence Viewer

Length: 1647 bp
ATGCTGGGCTCGGCCCTTTTATGTATTCAATCATGCTCGTGTAACTCATCCTGTTTGACTGACAGCGCGAGGAGTCGAAGTACTCGCATCAGTTGTTGGAACAAACACCAGAGTGTTCCTCTCAGTATTCTGTCAGTCAGAGCCGACGACAGCAGAGATATGCATCCATTAGCTGGAGGAGGAGTTGAGGACGAAGACGACAAGCGACGTCGTCAGAGGAAGCTTGAAGAAGCTCTCGAAATCAAGTCCCTCAGGCGCATCATCAGCGCCTACCTCAATTACCCGGAGGCGTCAGAAGAGGACGTGAGGCGGTATGAAAGATCTTTTAGATTGCTTCCACCTGCCCATAAGGCTCTCTTATCCCACTACCCATTGAAGTTTCAAAGACTAAGACGGTGCATCTCCGCAAATTCATATTTCATTTTTAACATGCTTCAGGCATTTGAACCTCCACTTGGTTTGAGCCAGGACATAGATGTCTGTGATGGACCACATCTTGAAAACGTCCTGAAGAATCACGATGTTTCTGGAGTAAATAATGTCTTCTCTTCTCAGTCTACCTGCGCTAGCGAAAGATTGCATACCTCCAATTCAGATCAGGCCTGTTGTGGAGAAGGGAGCAATACAGTGAGCAGTTCACCGATAGTGACTACCAATAAGGTAGACAAAAATGGTCATCGTGAGTCCATGACCGATAGACACGCTCTAGGCGTGGAATATGACAAAGAGACACAGAACTGTTGTGGGAATGATGCCATTGATTCCAATGGAGATGTATCCTCACCAACTCGGACATGGTTGGATCCATCATTACAATTACATGTTCCATTAGTTGATGTTGATAAGGTTCGTTGTGTAGTACGGAACATAGTTAGAGACTGGGCGGCAGAGGGACAGAAAGAACGTGATCAGTGCTACAAGCCTATATTAAAAGAACTTGATGCACTTTTTGCTAATCGCTCTAAGGAAAGTCCTCCTGCCTGTTTGGTTCCTGGTGCTGGACTTGGGCGGCTGGCTTTGGAAATCTCGTGTCTAGGTTTTATAAGTCAGGGAAATGAATTTTCATACTACATGATGATATGTTCGAATTTTATTCTTAATCATTGCCAAACTGCTGGGGAGTGGACAATATATCCTTGGATCCACAGCAATTGCAATTCACTTTCAGATAGTGACCAACTTCGTCCTGTTCCAGTGCCAGATATTCATCCAGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGCGGTGGCGACTTTGTTGAGGTTTACAACGATCCAAGCCAAGTAGGTGTCTGGGATGCGGTTGTGACCTGTTTCTTTATTGATACCGCGCACAACATTATTGAATACATTGAAATCATATCAAGAATCTTGAAAGACGGCGGAGTTTGGATAAATCTGGGTCCCCTACTTTATCACTTTGCGGATGTCTATGGGCAAGATGAAATATCTATTGAACTGAGTTTGGAGGATGTGAAGAGGGTTGCTTTGCACTACGGATTTCATTTCGAGAAAGAAAGTACCGTTGAGACAACCTACACTACAAATCCTAGGTCAATGATGCAAAACCGATACTACGCCGCATTTTGGACGATGAGGAAGAGATCGGCAACAATGGAGCACCAACCTCCTTTAACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

549

Amino Acids

61.56

Weight (kDa)

5.59

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 271 - 536 1.3e-111 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32170 AT2G32170
fragaria_vesca FvH4_6g39770 FvH4_6g39770
malus_domestica MD09G1136900.v1.1 MD17G1127100.v1.1
prunus_persica Prupe.3G188100_v2.0.a1
pyrus_communis pycom09g05780 pycom17g11940
rosa_chinensis RchiOBHm_Chr2g0153881
rosa_laevigata RLG00000020736
rosa_multiflora Rmu_sc0003887.1_g000010
rosa_roxburghii Rroxscaffold_2G00094680
rosa_rugosa Rorug02G0443000
rosa_samantha Rh2AG506700 Rh2BG516700 Rh2CG492400 Rh2DG528800
rosa_wichuraiana Rw2G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1043
AarI CACCTGC 1 cut(s) 349
AasI GACNNNNNNGTC 1 cut(s) 476
AatII GACGTC 1 cut(s) 211
Acc36I ACCTGC 2 cut(s) 349, 569
AccB7I CCANNNNNTGG 1 cut(s) 173
AccI GTMKAC 2 cut(s) 557, 663
AccII CGCG 2 cut(s) 68, 1334
AclWI GGATC 5 cut(s) 797, 810, 1135, 1148, 1271
AcsI RAATTY 3 cut(s) 409, 1058, 1087
AcuI CTGAAG 3 cut(s) 419, 530, 1251
AcyI GRCGYC 2 cut(s) 208, 290
AfaI GTAC 3 cut(s) 82, 861, 1525
AfiI CCNNNNNNNGG 4 cut(s) 173, 455, 998, 1590
AflIII ACRYGT 1 cut(s) 820
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 2 cut(s) 465, 991
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AleI CACNNNNGTG 1 cut(s) 111
AluBI AGCT 4 cut(s) 173, 223, 233, 1214
AluI AGCT 4 cut(s) 173, 223, 233, 1214
Alw21I GWGCWC 1 cut(s) 1626
Alw26I GTCTC 3 cut(s) 722, 870, 1526
AlwI GGATC 5 cut(s) 797, 810, 1135, 1148, 1271
AoxI GGCC 2 cut(s) 12, 600
ApoI RAATTY 3 cut(s) 409, 1058, 1087
ArsI GACNNNNNNTTYG 2 cut(s) 1541, 1573
AspA2I CCTAGG 1 cut(s) 1553
AspLEI GCGC 5 cut(s) 68, 258, 269, 566, 1336
AspS9I GGNCC 3 cut(s) 13, 488, 1406
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 630, 774
AsuII TTCGAA 1 cut(s) 1085
AsuNHI GCTAGC 1 cut(s) 566
AvaII GGWCC 2 cut(s) 488, 1406
AvrII CCTAGG 1 cut(s) 1553
AxyI CCTNAGG 1 cut(s) 251
BamHI GGATCC 2 cut(s) 802, 1140
BanII GRGCYC 1 cut(s) 11
BauI CACGAG 2 cut(s) 37, 1027
BbsI GAAGAC 2 cut(s) 201, 535
Bbv12I GWGCWC 1 cut(s) 1626
BccI CCATC 2 cut(s) 479, 814
BceAI ACGGC 1 cut(s) 1399
BciT130I CCWGG 2 cut(s) 467, 993
BciVI GTATCC 1 cut(s) 787
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 3 cut(s) 722, 870, 1526
BfaI CTAG 5 cut(s) 567, 707, 1034, 1215, 1554
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 2 cut(s) 349, 569
BfuI GTATCC 1 cut(s) 787
BglI GCCNNNNNGGC 1 cut(s) 350
BglII AGATCT 1 cut(s) 320
BisI GCNGC 3 cut(s) 885, 1010, 1584
BlnI CCTAGG 1 cut(s) 1553
BlsI GCNGC 3 cut(s) 886, 1011, 1585
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 284, 467, 993
Bme18I GGWCC 2 cut(s) 488, 1406
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 3 cut(s) 13, 488, 1406
BmiI GGNNCC 5 cut(s) 804, 990, 1142, 1407, 1408
BmrFI CCNGG 3 cut(s) 284, 467, 993
BmrI ACTGGG 1 cut(s) 889
BmsI GCATC 8 cut(s) 96, 172, 267, 408, 742, 931, 1291, 1554
BmtI GCTAGC 1 cut(s) 570
BmuI ACTGGG 1 cut(s) 889
BpiI GAAGAC 2 cut(s) 201, 535
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 2 cut(s) 195, 549
Bpu14I TTCGAA 1 cut(s) 1085
BpuMI CCSGG 1 cut(s) 284
BsaBI GATNNNNATC 2 cut(s) 162, 1206
BsaHI GRCGYC 2 cut(s) 208, 290
BsaJI CCNNGG 2 cut(s) 1136, 1553
BsaXI ACNNNNNCTCC 4 cut(s) 64, 94, 168, 198
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 455, 998, 1590
Bse1I ACTGG 2 cut(s) 884, 1193
Bse21I CCTNAGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 1102
Bse8I GATNNNNATC 2 cut(s) 162, 1206
BseBI CCWGG 2 cut(s) 467, 993
BseDI CCNNGG 2 cut(s) 1136, 1553
BseGI GGATG 6 cut(s) 47, 163, 1207, 1306, 1435, 1480
BseJI GATNNNNATC 2 cut(s) 162, 1206
BseLI CCNNNNNNNGG 4 cut(s) 173, 455, 998, 1590
BseMI GCAATG 1 cut(s) 1102
BseMII CTCAG 4 cut(s) 136, 265, 566, 1454
BseNI ACTGG 2 cut(s) 884, 1193
BseRI GAGGAG 3 cut(s) 85, 192, 195
BseYI CCCAGC 2 cut(s) 4, 1115
BsgI GTGCAG 1 cut(s) 1239
Bsh1236I CGCG 2 cut(s) 68, 1334
BshFI GGCC 2 cut(s) 14, 602
BsiHKAI GWGCWC 1 cut(s) 1626
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 3 cut(s) 232, 906, 1392
BslI CCNNNNNNNGG 4 cut(s) 173, 455, 998, 1590
BsmAI GTCTC 3 cut(s) 722, 870, 1526
BsmFI GGGAC 3 cut(s) 232, 906, 1392
BsnI GGCC 2 cut(s) 14, 602
Bsp119I TTCGAA 1 cut(s) 1085
Bsp1286I GDGCHC 2 cut(s) 11, 1626
Bsp143I GATC 7 cut(s) 320, 595, 802, 907, 1140, 1276, 1607
BspANI GGCC 2 cut(s) 14, 602
BspCNI CTCAG 4 cut(s) 135, 264, 565, 1455
BspFNI CGCG 2 cut(s) 68, 1334
BspLI GGNNCC 5 cut(s) 804, 990, 1142, 1407, 1408
BspMI ACCTGC 2 cut(s) 349, 569
BspOI GCTAGC 1 cut(s) 570
BspPI GGATC 5 cut(s) 797, 810, 1135, 1148, 1271
BspT104I TTCGAA 1 cut(s) 1085
BsrDI GCAATG 1 cut(s) 1102
BsrI ACTGG 2 cut(s) 884, 1193
BssECI CCNNGG 2 cut(s) 1136, 1553
BssMI GATC 7 cut(s) 320, 595, 802, 907, 1140, 1276, 1607
BssNI GRCGYC 2 cut(s) 208, 290
BssSI CACGAG 2 cut(s) 37, 1027
BssT1I CCWWGG 2 cut(s) 1136, 1553
Bst2BI CACGAG 2 cut(s) 37, 1027
Bst2UI CCWGG 2 cut(s) 467, 993
Bst4CI ACNGT 4 cut(s) 396, 628, 740, 1528
Bst6I CTCTTC 4 cut(s) 291, 553, 1475, 1598
BstACI GRCGYC 2 cut(s) 208, 290
BstAPI GCANNNNNTGC 1 cut(s) 950
BstBI TTCGAA 1 cut(s) 1085
BstC8I GCNNGC 2 cut(s) 568, 1014
BstDEI CTNAG 6 cut(s) 122, 251, 389, 552, 963, 1463
BstF5I GGATG 6 cut(s) 47, 163, 1207, 1306, 1435, 1480
BstFNI CGCG 2 cut(s) 68, 1334
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 5 cut(s) 68, 258, 269, 566, 1336
BstKTI GATC 7 cut(s) 323, 598, 805, 910, 1143, 1279, 1610
BstMAI GTCTC 3 cut(s) 722, 870, 1526
BstMBI GATC 7 cut(s) 320, 595, 802, 907, 1140, 1276, 1607
BstMWI GCNNNNNNNGC 3 cut(s) 264, 350, 950
BstNI CCWGG 2 cut(s) 467, 993
BstNSI RCATGY 2 cut(s) 433, 824
BstSCI CCNGG 3 cut(s) 282, 465, 991
BstUI CGCG 2 cut(s) 68, 1334
BstV2I GAAGAC 2 cut(s) 201, 535
BstX2I RGATCY 3 cut(s) 320, 802, 1140
BstXI CCANNNNNNTGG 1 cut(s) 1115
BstYI RGATCY 3 cut(s) 320, 802, 1140
Bsu36I CCTNAGG 1 cut(s) 251
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 2 cut(s) 14, 602
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 6 cut(s) 47, 163, 1207, 1306, 1435, 1480
BtsIMutI CAGTG 3 cut(s) 633, 917, 1200
BveI ACCTGC 2 cut(s) 349, 569
Cac8I GCNNGC 2 cut(s) 568, 1014
CfoI GCGC 5 cut(s) 68, 258, 269, 566, 1336
Cfr13I GGNCC 3 cut(s) 13, 488, 1406
CseI GACGC 1 cut(s) 279
Csp6I GTAC 3 cut(s) 81, 860, 1524
CspCI CAANNNNNGTGG 4 cut(s) 441, 476, 1133, 1168
CviAII CATG 6 cut(s) 33, 430, 688, 795, 821, 1072
CviQI GTAC 3 cut(s) 81, 860, 1524
DdeI CTNAG 6 cut(s) 122, 251, 389, 552, 963, 1463
DpnI GATC 7 cut(s) 322, 597, 804, 909, 1142, 1278, 1609
DpnII GATC 7 cut(s) 320, 595, 802, 907, 1140, 1276, 1607
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
Eam1104I CTCTTC 4 cut(s) 291, 553, 1475, 1598
EarI CTCTTC 4 cut(s) 291, 553, 1475, 1598
EciI GGCGGA 1 cut(s) 1401
Eco130I CCWWGG 2 cut(s) 1136, 1553
Eco147I AGGCCT 1 cut(s) 602
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 2 cut(s) 488, 1406
Eco57I CTGAAG 3 cut(s) 419, 530, 1251
Eco81I CCTNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 1406
EcoRII CCWGG 2 cut(s) 465, 991
EcoT14I CCWWGG 2 cut(s) 1136, 1553
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 1136, 1553
FaeI CATG 6 cut(s) 36, 433, 691, 798, 824, 1075
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 3 cut(s) 232, 906, 1392
FatI CATG 6 cut(s) 32, 429, 687, 794, 820, 1071
FbaI TGATCA 1 cut(s) 907
FblI GTMKAC 2 cut(s) 557, 663
Fnu4HI GCNGC 3 cut(s) 885, 1010, 1584
FokI GGATG 6 cut(s) 34, 150, 1194, 1313, 1442, 1487
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 885, 1010, 1584
FspBI CTAG 5 cut(s) 567, 707, 1034, 1215, 1554
GlaI GCGC 5 cut(s) 67, 257, 268, 565, 1335
GluI GCNGC 3 cut(s) 885, 1010, 1584
GsaI CCCAGC 2 cut(s) 8, 1119
GsuI CTGGAG 2 cut(s) 195, 549
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 14, 602
HapII CCGG 1 cut(s) 284
HgaI GACGC 1 cut(s) 279
HhaI GCGC 5 cut(s) 68, 258, 269, 566, 1336
Hin1I GRCGYC 2 cut(s) 208, 290
Hin1II CATG 6 cut(s) 36, 433, 691, 798, 824, 1075
Hin6I GCGC 5 cut(s) 66, 256, 267, 564, 1334
HinP1I GCGC 5 cut(s) 66, 256, 267, 564, 1334
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 5 cut(s) 73, 514, 683, 761, 1371
HpaII CCGG 1 cut(s) 284
HphI GGTGA 2 cut(s) 630, 774
Hpy166II GTNNAC 5 cut(s) 558, 638, 664, 1125, 1270
Hpy188I TCNGA 6 cut(s) 140, 216, 295, 595, 792, 1168
Hpy188III TCNNGA 9 cut(s) 236, 497, 508, 518, 528, 680, 1368, 1375, 1513
Hpy8I GTNNAC 5 cut(s) 558, 638, 664, 1125, 1270
Hpy99I CGWCG 3 cut(s) 149, 210, 213
HpyAV CCTTC 2 cut(s) 608, 1226
HpyCH4III ACNGT 4 cut(s) 396, 628, 740, 1528
HpyCH4IV ACGT 4 cut(s) 208, 303, 504, 904
HpyCH4V TGCA 8 cut(s) 163, 399, 580, 944, 1155, 1220, 1495, 1567
HpyF10VI GCNNNNNNNGC 3 cut(s) 264, 350, 950
HpyF3I CTNAG 6 cut(s) 122, 251, 389, 552, 963, 1463
HpySE526I ACGT 4 cut(s) 208, 303, 504, 904
Hsp92I GRCGYC 2 cut(s) 208, 290
Hsp92II CATG 6 cut(s) 36, 433, 691, 798, 824, 1075
HspAI GCGC 5 cut(s) 66, 256, 267, 564, 1334
KflI GGGWCCC 1 cut(s) 1406
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 7 cut(s) 320, 595, 802, 907, 1140, 1276, 1607
LmnI GCTCC 2 cut(s) 618, 1621
LweI GCATC 8 cut(s) 96, 172, 267, 408, 742, 931, 1291, 1554
MaeI CTAG 5 cut(s) 567, 707, 1034, 1215, 1554
MaeII ACGT 4 cut(s) 208, 303, 504, 904
MaeIII GTNAC 4 cut(s) 41, 646, 1172, 1309
MalI GATC 7 cut(s) 322, 597, 804, 909, 1142, 1278, 1609
MboI GATC 7 cut(s) 320, 595, 802, 907, 1140, 1276, 1607
MboII GAAGA 8 cut(s) 206, 239, 308, 523, 535, 540, 1492, 1615
MfeI CAATTG 1 cut(s) 1150
MflI RGATCY 3 cut(s) 320, 802, 1140
MhlI GDGCHC 2 cut(s) 11, 1626
MluCI AATT 8 cut(s) 277, 409, 589, 815, 1058, 1087, 1150, 1156
MlyI GAGTC 2 cut(s) 82, 692
MmeI TCCRAC 2 cut(s) 77, 780
Mph1103I ATGCAT 1 cut(s) 165
MseI TTAA 4 cut(s) 426, 929, 1098, 1637
MslI CAYNNNNRTG 2 cut(s) 37, 111
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 3 cut(s) 284, 467, 993
MunI CAATTG 1 cut(s) 1150
MvaI CCWGG 2 cut(s) 467, 993
MvnI CGCG 2 cut(s) 68, 1334
MwoI GCNNNNNNNGC 3 cut(s) 264, 350, 950
NciI CCSGG 1 cut(s) 284
NdeII GATC 7 cut(s) 320, 595, 802, 907, 1140, 1276, 1607
NheI GCTAGC 1 cut(s) 566
NlaIII CATG 6 cut(s) 36, 433, 691, 798, 824, 1075
NlaIV GGNNCC 5 cut(s) 804, 990, 1142, 1407, 1408
NmuCI GTSAC 3 cut(s) 646, 1172, 1309
NsiI ATGCAT 1 cut(s) 165
NspI RCATGY 2 cut(s) 433, 824
NspV TTCGAA 1 cut(s) 1085
OliI CACNNNNGTG 1 cut(s) 111
PaqCI CACCTGC 1 cut(s) 349
PceI AGGCCT 1 cut(s) 602
PciI ACATGT 1 cut(s) 820
PcsI WCGNNNNNNNCGW 1 cut(s) 708
PfeI GAWTC 3 cut(s) 514, 761, 1371
PflFI GACNNNGTC 1 cut(s) 210
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 3 cut(s) 886, 1011, 1585
PleI GAGTC 2 cut(s) 81, 691
PpsI GAGTC 2 cut(s) 81, 691
PpuMI RGGWCCY 1 cut(s) 1406
PscI ACATGT 1 cut(s) 820
PsiI TTATAA 1 cut(s) 1043
Psp5II RGGWCCY 1 cut(s) 1406
Psp6I CCWGG 2 cut(s) 465, 991
PspFI CCCAGC 2 cut(s) 4, 1115
PspGI CCWGG 2 cut(s) 465, 991
PspN4I GGNNCC 5 cut(s) 804, 990, 1142, 1407, 1408
PspPI GGNCC 3 cut(s) 13, 488, 1406
PspPPI RGGWCCY 1 cut(s) 1406
PsuI RGATCY 3 cut(s) 320, 802, 1140
PsyI GACNNNGTC 1 cut(s) 210
RsaI GTAC 3 cut(s) 82, 861, 1525
RsaNI GTAC 3 cut(s) 81, 860, 1524
RseI CAYNNNNRTG 2 cut(s) 37, 111
SaqAI TTAA 4 cut(s) 426, 929, 1098, 1637
SatI GCNGC 3 cut(s) 885, 1010, 1584
Sau3AI GATC 7 cut(s) 320, 595, 802, 907, 1140, 1276, 1607
Sau96I GGNCC 3 cut(s) 13, 488, 1406
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 2 cut(s) 82, 692
ScrFI CCNGG 3 cut(s) 284, 467, 993
SduI GDGCHC 2 cut(s) 11, 1626
SfaNI GCATC 8 cut(s) 96, 172, 267, 408, 742, 931, 1291, 1554
SfuI TTCGAA 1 cut(s) 1085
SinI GGWCC 2 cut(s) 488, 1406
SmiMI CAYNNNNRTG 2 cut(s) 37, 111
Sse9I AATT 8 cut(s) 277, 409, 589, 815, 1058, 1087, 1150, 1156
SseBI AGGCCT 1 cut(s) 602
SspMI CTAG 5 cut(s) 567, 707, 1034, 1215, 1554
StuI AGGCCT 1 cut(s) 602
StyD4I CCNGG 3 cut(s) 282, 465, 991
StyI CCWWGG 2 cut(s) 1136, 1553
TaaI ACNGT 4 cut(s) 396, 628, 740, 1528
TaiI ACGT 4 cut(s) 211, 306, 507, 907
TaqI TCGA 4 cut(s) 76, 237, 1085, 1512
TaqII GACCGA 1 cut(s) 707
TasI AATT 8 cut(s) 277, 409, 589, 815, 1058, 1087, 1150, 1156
TatI WGTACW 1 cut(s) 80
TauI GCSGC 3 cut(s) 887, 1012, 1586
TfiI GAWTC 3 cut(s) 514, 761, 1371
Tru1I TTAA 4 cut(s) 426, 929, 1098, 1637
Tru9I TTAA 4 cut(s) 426, 929, 1098, 1637
TscAI CASTG 3 cut(s) 633, 917, 1200
TseFI GTSAC 3 cut(s) 646, 1172, 1309
Tsp45I GTSAC 3 cut(s) 646, 1172, 1309
TspDTI ATGAA 8 cut(s) 330, 402, 409, 1053, 1071, 1196, 1461, 1496
TspGWI ACGGA 2 cut(s) 877, 1515
TspRI CASTG 3 cut(s) 633, 917, 1200
Tth111I GACNNNGTC 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 488, 1406
XapI RAATTY 3 cut(s) 409, 1058, 1087
XceI RCATGY 2 cut(s) 433, 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 792
XmaJI CCTAGG 1 cut(s) 1553
XmiI GTMKAC 2 cut(s) 557, 663
XspI CTAG 5 cut(s) 567, 707, 1034, 1215, 1554
ZraI GACGTC 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 82
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.