Rroxscaffold_2G00094680

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012063
Physical Location & Seq
Forward (+)
16062594 .. 16071152
8559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094680.1

Sequence Viewer

Length: 1497 bp
ATGTCAGTCCCAATGAACGAGACTCTGATTCTCCGAAGAGAAGAAGAAGAAGAAGACGACGAGGAACGACGTCGTCAAAGGAAGCTCGAAGAAGCCCTAGAAATCAAATCCCTCAAGCGCATCATCAGCGCCTACCTCAACTATCCGGAGGCTGCAGAAGAGGACGTGAGAAGATATGAAAGATCTTTTAAAATGCTTGCACCAGCCCATAAGGCTCTACTGTCTCACTACCCTTCTAAGTTTGAAAGACTAAGACGGTGTATTTCTGCCAATTCATATTTCATTTTCGATATGCTTCAGGAATTTGAACCCCCACTTGATTTGAGCCAGGATGTAGATGTTTGTGATGGCCTACATCCTGAAAACATCCCATCTGATCATGATGATTCTAGAGTAACAAATTGCTCTTCTCAATCAACCTCCGCAAGTCAAAGTATGCATGTCTCTGAATCTGATCATTCCTGTCTGGGTCTGGTGGAAGGGAGCAACAGAGTCTGCAATTCACCAGTACAGGAGGAGAAGTTTGAAGGTCATGGTGAGTCCATCAACGGGAGTCACACTTTAAGCTTGGAATATACCAAACAGATGCATAATTGTCATGCGAATAATGCCATTGATTCCAATGGAAATGTGTCCTCATCAACGCGCACATGGTTGGATCCATCAATTCAGTTACATGTTCCATTAGTTGATGTTGATAAGGTTCGATGTATTATACGGAACATAGTTAGAGACTGGGCAGCAGAGGGTCAGAAAGAACGTGATCAATGCTACAGGCCTATACTTGAAGAACTTGATTCACTATTTGTTGATCGCTGTAAGGAAAGCCCTCCTGCCTGTTTAGTTCCTGGTGCTGGACTTGGGCGGCTTGCATTGGAGATCTCATGTCGAGGTTTCATTAGCCAGGGAAATGAATTTTCATACTACATGATGATATGCTCAAGTTTTATTCTCAATGCTTGTCAAACTGCTGGGGAGTGGACAATATATCCGTGGATCCACAGCAATTGTAATTCACTTTCAGATGATGACCAACTTCGCCCCGTATCGATACCAGATATCCATCCCGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAACGATCCAAGCCAAGTAGGTGCTTGGGATGCAGTTGTGACCTGTTTCTTTATTGATACAGCACACAACATTGTTGAATACATTGAAATCATATCAAGAATCTTAAAAGAAGGAGGCGTTTGGATAAATATGGGTCCCCTACTATATCACTTTGCAGATGTATATGGACAAGGAGATGATATGTCTATTGAACTGAGTTTGGAGGATGTGAAGAGGGTTGCTTTGCATTATGGATTTCATATAGAGAAGGAAAAGACCATTGAGACAACCTACACTACAAATCCCAGATCAATGATGCAAAACCGATACCATGCTGCTTTTTGGACAATGAGAAAGAGATCAGCAAGAATAGAGCACAGCACTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

498

Amino Acids

56.64

Weight (kDa)

5.05

Isoelectric Point (pI)

64.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 224 - 489 1.2e-112 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32170 AT2G32170
fragaria_vesca FvH4_6g39770 FvH4_6g39770
malus_domestica MD09G1136900.v1.1 MD17G1127100.v1.1
prunus_persica Prupe.3G188100_v2.0.a1
pyrus_communis pycom09g05780 pycom17g11940
rosa_chinensis RchiOBHm_Chr2g0153881
rosa_laevigata RLG00000020736
rosa_multiflora Rmu_sc0003887.1_g000010
rosa_roxburghii Rroxscaffold_2G00094680
rosa_rugosa Rorug02G0443000
rosa_samantha Rh2AG506700 Rh2BG516700 Rh2CG492400 Rh2DG528800
rosa_wichuraiana Rw2G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1128
AatII GACGTC 1 cut(s) 73
AccII CGCG 1 cut(s) 646
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 4 cut(s) 423, 865, 1068, 1107
AclWI GGATC 5 cut(s) 653, 666, 991, 1004, 1127
AcsI RAATTY 2 cut(s) 302, 914
AcuI CTGAAG 2 cut(s) 281, 1107
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 2 cut(s) 549, 854
AflIII ACRYGT 1 cut(s) 676
AgsI TTSAA 7 cut(s) 245, 308, 527, 788, 1205, 1214, 1319
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 3 cut(s) 327, 847, 903
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 2 cut(s) 85, 567
AluI AGCT 2 cut(s) 85, 567
Alw21I GWGCWC 1 cut(s) 1485
Alw26I GTCTC 5 cut(s) 14, 228, 448, 726, 1385
AlwI GGATC 5 cut(s) 653, 666, 991, 1004, 1127
AlwNI CAGNNNCTG 1 cut(s) 495
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 2 cut(s) 349, 776
ApeKI GCWGC 3 cut(s) 152, 740, 1442
ApoI RAATTY 2 cut(s) 302, 914
AspLEI GCGC 3 cut(s) 120, 131, 648
AspS9I GGNCC 1 cut(s) 1262
AsuHPI GGTGA 3 cut(s) 495, 548, 1121
AvaII GGWCC 1 cut(s) 1262
BamHI GGATCC 2 cut(s) 658, 996
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 1485
BbvI GCAGC 3 cut(s) 139, 752, 1429
BccI CCATC 5 cut(s) 341, 379, 551, 670, 1071
BciT130I CCWGG 3 cut(s) 329, 849, 905
BclI TGATCA 3 cut(s) 376, 454, 763
BcoDI GTCTC 5 cut(s) 14, 228, 448, 726, 1385
BfaI CTAG 3 cut(s) 98, 390, 1071
BfmI CTRYAG 2 cut(s) 153, 772
BfoI RGCGCY 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 212
BglII AGATCT 2 cut(s) 182, 879
BisI GCNGC 4 cut(s) 153, 741, 866, 1443
BlsI GCNGC 4 cut(s) 154, 742, 867, 1444
Bme1390I CCNGG 3 cut(s) 329, 849, 905
Bme18I GGWCC 1 cut(s) 1262
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 1262
BmiI GGNNCC 4 cut(s) 660, 998, 1263, 1264
BmrFI CCNGG 3 cut(s) 329, 849, 905
BmrI ACTGGG 1 cut(s) 745
BmsI GCATC 4 cut(s) 129, 576, 1147, 1413
BmuI ACTGGG 1 cut(s) 745
BpiI GAAGAC 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 98, 925
Bsa29I ATCGAT 1 cut(s) 1049
BsaBI GATNNNNATC 1 cut(s) 1062
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 904, 992
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 549, 854
Bse1I ACTGG 2 cut(s) 506, 740
Bse8I GATNNNNATC 1 cut(s) 1062
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 3 cut(s) 329, 849, 905
BseCI ATCGAT 1 cut(s) 1049
BseDI CCNNGG 2 cut(s) 904, 992
BseGI GGATG 6 cut(s) 337, 355, 366, 1063, 1162, 1339
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 2 cut(s) 549, 854
BseMII CTCAG 1 cut(s) 1313
BseNI ACTGG 2 cut(s) 506, 740
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 3 cut(s) 139, 752, 1429
BseYI CCCAGC 1 cut(s) 971
BsgI GTGCAG 1 cut(s) 1095
Bsh1236I CGCG 1 cut(s) 646
BshFI GGCC 2 cut(s) 351, 778
BshVI ATCGAT 1 cut(s) 1049
BsiHKAI GWGCWC 1 cut(s) 1485
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 1248
BslI CCNNNNNNNGG 2 cut(s) 549, 854
BsmAI GTCTC 5 cut(s) 14, 228, 448, 726, 1385
BsmFI GGGAC 1 cut(s) 1248
BsnI GGCC 2 cut(s) 351, 778
Bsp1286I GDGCHC 1 cut(s) 1485
Bsp13I TCCGGA 1 cut(s) 145
BspACI CCGC 4 cut(s) 423, 865, 1068, 1107
BspANI GGCC 2 cut(s) 351, 778
BspCNI CTCAG 1 cut(s) 1314
BspDI ATCGAT 1 cut(s) 1049
BspEI TCCGGA 1 cut(s) 145
BspFNI CGCG 1 cut(s) 646
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 4 cut(s) 660, 998, 1263, 1264
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 5 cut(s) 653, 666, 991, 1004, 1127
BspQI GCTCTTC 1 cut(s) 412
BsrI ACTGG 2 cut(s) 506, 740
BssECI CCNNGG 2 cut(s) 904, 992
BssNI GRCGYC 1 cut(s) 70
Bst2UI CCWGG 3 cut(s) 329, 849, 905
Bst4CI ACNGT 2 cut(s) 222, 258
Bst6I CTCTTC 4 cut(s) 31, 153, 412, 1334
BstACI GRCGYC 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 198, 870
BstDEI CTNAG 3 cut(s) 237, 251, 1322
BstDSI CCRYGG 1 cut(s) 992
BstF5I GGATG 6 cut(s) 337, 355, 366, 1063, 1162, 1339
BstFNI CGCG 1 cut(s) 646
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 3 cut(s) 120, 131, 648
BstMAI GTCTC 5 cut(s) 14, 228, 448, 726, 1385
BstMWI GCNNNNNNNGC 4 cut(s) 126, 212, 608, 1157
BstNI CCWGG 3 cut(s) 329, 849, 905
BstNSI RCATGY 2 cut(s) 443, 680
BstSCI CCNGG 3 cut(s) 327, 847, 903
BstSFI CTRYAG 2 cut(s) 153, 772
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 3 cut(s) 139, 752, 1429
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 4 cut(s) 182, 658, 879, 996
BstYI RGATCY 4 cut(s) 182, 658, 879, 996
Bsu15I ATCGAT 1 cut(s) 1049
BsuRI GGCC 2 cut(s) 351, 778
BsuTUI ATCGAT 1 cut(s) 1049
BtgI CCRYGG 1 cut(s) 992
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 6 cut(s) 337, 355, 366, 1063, 1162, 1339
Cac8I GCNNGC 2 cut(s) 198, 870
CaiI CAGNNNCTG 1 cut(s) 495
CciI TCATGA 1 cut(s) 379
CfoI GCGC 3 cut(s) 120, 131, 648
Cfr13I GGNCC 1 cut(s) 1262
ClaI ATCGAT 1 cut(s) 1049
Csp6I GTAC 1 cut(s) 509
CspCI CAANNNNNGTGG 4 cut(s) 303, 338, 989, 1024
CviAII CATG 9 cut(s) 380, 440, 533, 599, 651, 677, 885, 928, 1439
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 3 cut(s) 237, 251, 1322
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 4 cut(s) 31, 153, 412, 1334
EarI CTCTTC 4 cut(s) 31, 153, 412, 1334
Eco147I AGGCCT 1 cut(s) 778
Eco32I GATATC 1 cut(s) 1060
Eco47I GGWCC 1 cut(s) 1262
Eco57I CTGAAG 2 cut(s) 281, 1107
EcoO109I RGGNCCY 1 cut(s) 1262
EcoRII CCWGG 3 cut(s) 327, 847, 903
EcoRV GATATC 1 cut(s) 1060
EcoT22I ATGCAT 2 cut(s) 441, 591
FaeI CATG 9 cut(s) 383, 443, 536, 602, 654, 680, 888, 931, 1442
FaqI GGGAC 1 cut(s) 1248
FatI CATG 9 cut(s) 379, 439, 532, 598, 650, 676, 884, 927, 1438
FauI CCCGC 1 cut(s) 1075
FbaI TGATCA 3 cut(s) 376, 454, 763
Fnu4HI GCNGC 4 cut(s) 153, 741, 866, 1443
FokI GGATG 6 cut(s) 342, 344, 353, 1050, 1169, 1346
Fsp4HI GCNGC 4 cut(s) 153, 741, 866, 1443
FspBI CTAG 3 cut(s) 98, 390, 1071
GlaI GCGC 3 cut(s) 119, 130, 647
GluI GCNGC 4 cut(s) 153, 741, 866, 1443
GsaI CCCAGC 1 cut(s) 975
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 2 cut(s) 351, 778
HapII CCGG 1 cut(s) 146
HhaI GCGC 3 cut(s) 120, 131, 648
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 9 cut(s) 383, 443, 536, 602, 654, 680, 888, 931, 1442
Hin6I GCGC 3 cut(s) 118, 129, 646
HinP1I GCGC 3 cut(s) 118, 129, 646
HindIII AAGCTT 1 cut(s) 565
HpaII CCGG 1 cut(s) 146
HphI GGTGA 3 cut(s) 495, 548, 1121
Hpy166II GTNNAC 1 cut(s) 981
Hpy188I TCNGA 7 cut(s) 27, 35, 376, 448, 454, 753, 1024
Hpy188III TCNNGA 6 cut(s) 146, 299, 359, 380, 390, 1224
Hpy8I GTNNAC 1 cut(s) 981
Hpy99I CGWCG 3 cut(s) 62, 72, 75
HpyAV CCTTC 6 cut(s) 243, 473, 521, 1082, 1232, 1369
HpyCH4III ACNGT 2 cut(s) 222, 258
HpyCH4IV ACGT 3 cut(s) 70, 165, 760
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 212, 608, 1157
HpyF3I CTNAG 3 cut(s) 237, 251, 1322
HpySE526I ACGT 3 cut(s) 70, 165, 760
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 9 cut(s) 383, 443, 536, 602, 654, 680, 888, 931, 1442
HspAI GCGC 3 cut(s) 118, 129, 646
KflI GGGWCCC 1 cut(s) 1262
Kpn2I TCCGGA 1 cut(s) 145
Ksp22I TGATCA 3 cut(s) 376, 454, 763
LguI GCTCTTC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 483
Lsp1109I GCAGC 3 cut(s) 139, 752, 1429
LweI GCATC 4 cut(s) 129, 576, 1147, 1413
MaeI CTAG 3 cut(s) 98, 390, 1071
MaeII ACGT 3 cut(s) 70, 165, 760
MaeIII GTNAC 5 cut(s) 394, 554, 672, 1109, 1165
MfeI CAATTG 1 cut(s) 1006
MflI RGATCY 4 cut(s) 182, 658, 879, 996
MhlI GDGCHC 1 cut(s) 1485
MluCI AATT 9 cut(s) 271, 302, 400, 499, 592, 666, 914, 1006, 1012
MlyI GAGTC 4 cut(s) 16, 501, 548, 562
MmeI TCCRAC 1 cut(s) 636
Mph1103I ATGCAT 2 cut(s) 441, 591
MroI TCCGGA 1 cut(s) 145
MseI TTAA 4 cut(s) 189, 563, 1232, 1495
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 3 cut(s) 329, 849, 905
MunI CAATTG 1 cut(s) 1006
MvaI CCWGG 3 cut(s) 329, 849, 905
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 4 cut(s) 126, 212, 608, 1157
NlaIII CATG 9 cut(s) 383, 443, 536, 602, 654, 680, 888, 931, 1442
NlaIV GGNNCC 4 cut(s) 660, 998, 1263, 1264
NmuCI GTSAC 3 cut(s) 554, 1109, 1165
NsiI ATGCAT 2 cut(s) 441, 591
NspI RCATGY 2 cut(s) 443, 680
PagI TCATGA 1 cut(s) 379
PceI AGGCCT 1 cut(s) 778
PciI ACATGT 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 412
PfeI GAWTC 6 cut(s) 28, 386, 449, 617, 797, 1227
PflFI GACNNNGTC 1 cut(s) 72
PkrI GCNGC 4 cut(s) 154, 742, 867, 1444
PleI GAGTC 4 cut(s) 16, 500, 547, 561
PpsI GAGTC 4 cut(s) 16, 500, 547, 561
PpuMI RGGWCCY 1 cut(s) 1262
PscI ACATGT 1 cut(s) 676
PsiI TTATAA 1 cut(s) 1128
Psp5II RGGWCCY 1 cut(s) 1262
Psp6I CCWGG 3 cut(s) 327, 847, 903
PspFI CCCAGC 1 cut(s) 971
PspGI CCWGG 3 cut(s) 327, 847, 903
PspN4I GGNNCC 4 cut(s) 660, 998, 1263, 1264
PspPI GGNCC 1 cut(s) 1262
PspPPI RGGWCCY 1 cut(s) 1262
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 495
PsuI RGATCY 4 cut(s) 182, 658, 879, 996
PsyI GACNNNGTC 1 cut(s) 72
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SapI GCTCTTC 1 cut(s) 412
SaqAI TTAA 4 cut(s) 189, 563, 1232, 1495
SatI GCNGC 4 cut(s) 153, 741, 866, 1443
Sau96I GGNCC 1 cut(s) 1262
SchI GAGTC 4 cut(s) 16, 501, 548, 562
ScrFI CCNGG 3 cut(s) 329, 849, 905
SduI GDGCHC 1 cut(s) 1485
SfaNI GCATC 4 cut(s) 129, 576, 1147, 1413
SfcI CTRYAG 2 cut(s) 153, 772
SinI GGWCC 1 cut(s) 1262
SmlI CTYRAG 2 cut(s) 113, 940
SmoI CTYRAG 2 cut(s) 113, 940
Sse9I AATT 9 cut(s) 271, 302, 400, 499, 592, 666, 914, 1006, 1012
SseBI AGGCCT 1 cut(s) 778
SsiI CCGC 4 cut(s) 423, 865, 1068, 1107
SspMI CTAG 3 cut(s) 98, 390, 1071
StuI AGGCCT 1 cut(s) 778
StyD4I CCNGG 3 cut(s) 327, 847, 903
TaaI ACNGT 2 cut(s) 222, 258
TaiI ACGT 3 cut(s) 73, 168, 763
TaqI TCGA 5 cut(s) 87, 288, 706, 889, 1049
TasI AATT 9 cut(s) 271, 302, 400, 499, 592, 666, 914, 1006, 1012
TatI WGTACW 1 cut(s) 508
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 6 cut(s) 28, 386, 449, 617, 797, 1227
Tru1I TTAA 4 cut(s) 189, 563, 1232, 1495
Tru9I TTAA 4 cut(s) 189, 563, 1232, 1495
TseFI GTSAC 3 cut(s) 554, 1109, 1165
TseI GCWGC 3 cut(s) 152, 740, 1442
Tsp45I GTSAC 3 cut(s) 554, 1109, 1165
TspDTI ATGAA 8 cut(s) 29, 192, 264, 271, 886, 909, 927, 1355
TspGWI ACGGA 2 cut(s) 733, 981
Tth111I GACNNNGTC 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 1262
XapI RAATTY 2 cut(s) 302, 914
XbaI TCTAGA 1 cut(s) 389
XceI RCATGY 2 cut(s) 443, 680
XspI CTAG 3 cut(s) 98, 390, 1071
ZraI GACGTC 1 cut(s) 71
Zsp2I ATGCAT 2 cut(s) 441, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.