FvH4_6g39770

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012063
Physical Location & Seq
Reverse (-)
31389665 .. 31396472
6808 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39770.t1

Sequence Viewer

Length: 1494 bp
ATGTCAGCCCCAATGAACGAGAGCCTAATTCTCCGACGAGACCAAGAAGACGACGACGACGACGAAGAACGACGTCGTCCAAGGCACGAAGAAGCCCTAGAAATCAAATCTCTCCGGCGCATCATCAGCGCCTACCTCAACTATCCGGAGGCTGCAGAAGAGGATGTGAGAAGATATGAAAGATCTTTTAAAATGCTTCCACCTCCCCATAAGGCTCTACTGTCTCACTACCATTCTAAGTTCGAAAAACTAAGACGGTGTATTTCTGCCAATTCATATTTCATTTTCGATATGCTTCAGGCATTTCAACCCCCACTTGATTTGAGCCAGGATGTAGATGATTATGATGGCCTACCTGAAAACATCTCAACTAATCATGATGTTTCTAGAGTTTCAAAATCTTCTCAATTAACCTCCACGAATACTCATGTCTCCAAATCTGTTCAAGCGGCTGAAGCCTATGTGGTGGAAAGGAGCAACACAGTATGCAATTGCAATTTACCTATAGGGGAGGATAAGCATGAAGGTCATGGTGGGTCCATCAATGGGAGTCACACTTCAAGCTTGGAATATACCAAAGACATACATATTTGTCACGGAAATAATGCCATCGATTCCAATGGAAATGTATCGTCGTCAACTCGTACATGGTTGGATCCATCTATACAATTACATGTTCCATTAGTTGATGTTGATAAGGTTCGATGTATTATACGGAACATAGTTAGAGACTGGGCAGCTGAGGGTCAAAAAGAACGTGATCAATGCTACACGCCTATACTTGAAGAACTTGATTCATTATTTGTTAATCGCTCTAAGGAAAGCCCTCCTGCCTGTTTAGTTCCGGGCGCTGGACTTGGGCGGCTTGCTTTGGAGATCTCATCTAGAGGTTTCATTTGCCAGGGAAATGAATTTTCATACTACATGATGATATGCTCAAGTTTTATTCTCAATGATTGTCAAACTGCTGGGGAGTGGACAATATATCCGTGGATCCACAGCAATTGTAATTCACTTTCAGATGATGACCAACTTCGTCCCATTCCAATACCGGATATTCATCCCGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGGGGGGACTTTGTTGAGGTTTATAATGATCCAAGCCAAGTAGGTGCTTGGGATGCTGTTGTCACCTGTTTCTTTATTGATACGGCGCACAACATTGTTGAATACATTGAAATCATATCAAGAATCTTGAAAGAAGGAGGCGTTTGGATAAATTTGGGTCCCCTATTGTATCACTTTGCAGATGTATATGGACAAGGAGATGATATGTCTATTGAACTGAGTTTGGAGGATGTTAAGAGGGTGGCTTTGCACTATGGATTTCATATAGAGAAGGAAACGACCATTGAGACAACCTACACTACAAATCCCAAGTCAATGATGCAGAACCGATACTATGCTGCTTTTTGGACAATGAGAAAGAAATCAACGACAATGGCACACATCACTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

498

Amino Acids

56.28

Weight (kDa)

5.11

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 223 - 488 5.9e-112 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32170 AT2G32170
fragaria_vesca FvH4_6g39770 FvH4_6g39770
malus_domestica MD09G1136900.v1.1 MD17G1127100.v1.1
prunus_persica Prupe.3G188100_v2.0.a1
pyrus_communis pycom09g05780 pycom17g11940
rosa_chinensis RchiOBHm_Chr2g0153881
rosa_laevigata RLG00000020736
rosa_multiflora Rmu_sc0003887.1_g000010
rosa_roxburghii Rroxscaffold_2G00094680
rosa_rugosa Rorug02G0443000
rosa_samantha Rh2AG506700 Rh2BG516700 Rh2CG492400 Rh2DG528800
rosa_wichuraiana Rw2G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1125
AatII GACGTC 1 cut(s) 76
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 3 cut(s) 449, 862, 1065
AclWI GGATC 5 cut(s) 650, 663, 988, 1001, 1124
AcsI RAATTY 2 cut(s) 911, 1252
AcuI CTGAAG 3 cut(s) 281, 474, 1104
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 2 cut(s) 546, 851
AflIII ACRYGT 1 cut(s) 673
AgsI TTSAA 9 cut(s) 308, 396, 446, 561, 785, 1202, 1211, 1231, 1316
AjnI CCWGG 2 cut(s) 327, 900
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 2 cut(s) 564, 740
AluI AGCT 2 cut(s) 564, 740
Alw26I GTCTC 5 cut(s) 33, 228, 436, 723, 1382
AlwI GGATC 5 cut(s) 650, 663, 988, 1001, 1124
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 152, 737, 1439
ApoI RAATTY 2 cut(s) 911, 1252
ArsI GACNNNNNNTTYG 2 cut(s) 1397, 1429
AspLEI GCGC 4 cut(s) 120, 131, 851, 1189
AspS9I GGNCC 2 cut(s) 537, 1259
AsuC2I CCSGG 1 cut(s) 846
AsuHPI GGTGA 1 cut(s) 1156
AsuII TTCGAA 1 cut(s) 243
AvaII GGWCC 2 cut(s) 537, 1259
BamHI GGATCC 2 cut(s) 655, 993
BbsI GAAGAC 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 741
BbvI GCAGC 3 cut(s) 139, 749, 1426
BccI CCATC 4 cut(s) 341, 548, 617, 667
BceAI ACGGC 1 cut(s) 1200
BciT130I CCWGG 2 cut(s) 329, 902
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 846
BcoDI GTCTC 5 cut(s) 33, 228, 436, 723, 1382
BfaI CTAG 4 cut(s) 98, 387, 885, 1068
BfmI CTRYAG 2 cut(s) 153, 504
BfoI RGCGCY 2 cut(s) 132, 852
BglII AGATCT 2 cut(s) 182, 876
BisI GCNGC 5 cut(s) 153, 450, 738, 863, 1440
BlsI GCNGC 5 cut(s) 154, 451, 739, 864, 1441
Bme1390I CCNGG 3 cut(s) 329, 846, 902
Bme18I GGWCC 2 cut(s) 537, 1259
BmgT120I GGNCC 2 cut(s) 537, 1259
BmiI GGNNCC 5 cut(s) 538, 657, 995, 1260, 1261
BmrFI CCNGG 3 cut(s) 329, 846, 902
BmrI ACTGGG 1 cut(s) 742
BmsI GCATC 3 cut(s) 129, 1144, 1410
BmuI ACTGGG 1 cut(s) 742
BpiI GAAGAC 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 922
BpuMI CCSGG 1 cut(s) 846
Bsa29I ATCGAT 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 1059
BsaHI GRCGYC 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 80, 901, 989
BsaWI WCCGGW 2 cut(s) 145, 1051
Bsc4I CCNNNNNNNGG 2 cut(s) 546, 851
Bse1I ACTGG 1 cut(s) 737
Bse8I GATNNNNATC 1 cut(s) 1059
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 2 cut(s) 329, 902
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 3 cut(s) 80, 901, 989
BseGI GGATG 5 cut(s) 169, 337, 1060, 1159, 1336
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 2 cut(s) 546, 851
BseMII CTCAG 2 cut(s) 732, 1310
BseNI ACTGG 1 cut(s) 737
BseXI GCAGC 3 cut(s) 139, 749, 1426
BseYI CCCAGC 1 cut(s) 968
BsgI GTGCAG 1 cut(s) 1092
BshFI GGCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 612
BsiSI CCGG 4 cut(s) 115, 146, 845, 1052
BslFI GGGAC 3 cut(s) 1023, 1121, 1245
BslI CCNNNNNNNGG 2 cut(s) 546, 851
BsmAI GTCTC 5 cut(s) 33, 228, 436, 723, 1382
BsmFI GGGAC 3 cut(s) 1023, 1121, 1245
BsnI GGCC 1 cut(s) 351
Bso31I GGTCTC 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 243
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 6 cut(s) 182, 655, 760, 876, 993, 1129
BspACI CCGC 3 cut(s) 449, 862, 1065
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 2 cut(s) 733, 1311
BspDI ATCGAT 1 cut(s) 612
BspEI TCCGGA 1 cut(s) 145
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 5 cut(s) 538, 657, 995, 1260, 1261
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 5 cut(s) 650, 663, 988, 1001, 1124
BspT104I TTCGAA 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 737
BssECI CCNNGG 3 cut(s) 80, 901, 989
BssMI GATC 6 cut(s) 182, 655, 760, 876, 993, 1129
BssNI GRCGYC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 329, 902
Bst4CI ACNGT 3 cut(s) 222, 258, 484
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 73
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 867
BstDEI CTNAG 5 cut(s) 237, 251, 741, 816, 1319
BstDSI CCRYGG 1 cut(s) 989
BstF5I GGATG 5 cut(s) 169, 337, 1060, 1159, 1336
BstH2I RGCGCY 2 cut(s) 132, 852
BstHHI GCGC 4 cut(s) 120, 131, 851, 1189
BstKTI GATC 6 cut(s) 185, 658, 763, 879, 996, 1132
BstMAI GTCTC 5 cut(s) 33, 228, 436, 723, 1382
BstMBI GATC 6 cut(s) 182, 655, 760, 876, 993, 1129
BstMWI GCNNNNNNNGC 3 cut(s) 126, 455, 1154
BstNI CCWGG 2 cut(s) 329, 902
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 3 cut(s) 327, 844, 900
BstSFI CTRYAG 2 cut(s) 153, 504
BstV1I GCAGC 3 cut(s) 139, 749, 1426
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 4 cut(s) 182, 655, 876, 993
BstYI RGATCY 4 cut(s) 182, 655, 876, 993
Bsu15I ATCGAT 1 cut(s) 612
BsuRI GGCC 1 cut(s) 351
BsuTUI ATCGAT 1 cut(s) 612
BtgI CCRYGG 1 cut(s) 989
BtsCI GGATG 5 cut(s) 169, 337, 1060, 1159, 1336
Cac8I GCNNGC 1 cut(s) 867
CciI TCATGA 1 cut(s) 376
CfoI GCGC 4 cut(s) 120, 131, 851, 1189
Cfr13I GGNCC 2 cut(s) 537, 1259
ClaI ATCGAT 1 cut(s) 612
Csp6I GTAC 1 cut(s) 645
CspCI CAANNNNNGTGG 4 cut(s) 303, 338, 986, 1021
CviAII CATG 7 cut(s) 377, 428, 521, 530, 648, 674, 925
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 5 cut(s) 237, 251, 741, 816, 1319
DpnI GATC 6 cut(s) 184, 657, 762, 878, 995, 1131
DpnII GATC 6 cut(s) 182, 655, 760, 876, 993, 1129
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 537, 1259
Eco57I CTGAAG 3 cut(s) 281, 474, 1104
EcoO109I RGGNCCY 1 cut(s) 1259
EcoRII CCWGG 2 cut(s) 327, 900
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 7 cut(s) 380, 431, 524, 533, 651, 677, 928
FaqI GGGAC 3 cut(s) 1023, 1121, 1245
FatI CATG 7 cut(s) 376, 427, 520, 529, 647, 673, 924
FauI CCCGC 1 cut(s) 1072
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 5 cut(s) 153, 450, 738, 863, 1440
FokI GGATG 5 cut(s) 176, 344, 1047, 1166, 1343
Fsp4HI GCNGC 5 cut(s) 153, 450, 738, 863, 1440
FspBI CTAG 4 cut(s) 98, 387, 885, 1068
GlaI GCGC 4 cut(s) 119, 130, 850, 1188
GluI GCNGC 5 cut(s) 153, 450, 738, 863, 1440
GsaI CCCAGC 1 cut(s) 972
HaeII RGCGCY 2 cut(s) 132, 852
HaeIII GGCC 1 cut(s) 351
HapII CCGG 4 cut(s) 115, 146, 845, 1052
HhaI GCGC 4 cut(s) 120, 131, 851, 1189
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 7 cut(s) 380, 431, 524, 533, 651, 677, 928
Hin6I GCGC 4 cut(s) 118, 129, 849, 1187
HinP1I GCGC 4 cut(s) 118, 129, 849, 1187
HincII GTYRAC 1 cut(s) 639
HindII GTYRAC 1 cut(s) 639
HindIII AAGCTT 1 cut(s) 562
HinfI GANTC 4 cut(s) 550, 614, 794, 1224
HpaII CCGG 4 cut(s) 115, 146, 845, 1052
HphI GGTGA 1 cut(s) 1156
Hpy166II GTNNAC 2 cut(s) 639, 978
Hpy188I TCNGA 2 cut(s) 35, 1021
Hpy188III TCNNGA 6 cut(s) 146, 377, 387, 885, 1221, 1228
Hpy8I GTNNAC 2 cut(s) 639, 978
Hpy99I CGWCG 8 cut(s) 39, 56, 59, 62, 65, 75, 78, 637
HpyAV CCTTC 4 cut(s) 518, 1079, 1229, 1366
HpyCH4III ACNGT 3 cut(s) 222, 258, 484
HpyCH4IV ACGT 2 cut(s) 73, 757
HpyCH4V TGCA 7 cut(s) 155, 489, 495, 1073, 1280, 1351, 1423
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 455, 1154
HpyF3I CTNAG 5 cut(s) 237, 251, 741, 816, 1319
HpySE526I ACGT 2 cut(s) 73, 757
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 7 cut(s) 380, 431, 524, 533, 651, 677, 928
HspAI GCGC 4 cut(s) 118, 129, 849, 1187
KflI GGGWCCC 1 cut(s) 1259
Kpn2I TCCGGA 1 cut(s) 145
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 6 cut(s) 182, 655, 760, 876, 993, 1129
LmnI GCTCC 1 cut(s) 474
Lsp1109I GCAGC 3 cut(s) 139, 749, 1426
LweI GCATC 3 cut(s) 129, 1144, 1410
MaeI CTAG 4 cut(s) 98, 387, 885, 1068
MaeII ACGT 2 cut(s) 73, 757
MaeIII GTNAC 3 cut(s) 551, 593, 1162
MalI GATC 6 cut(s) 184, 657, 762, 878, 995, 1131
MboI GATC 6 cut(s) 182, 655, 760, 876, 993, 1129
MboII GAAGA 7 cut(s) 59, 77, 101, 170, 183, 393, 797
MfeI CAATTG 2 cut(s) 490, 1003
MflI RGATCY 4 cut(s) 182, 655, 876, 993
MlyI GAGTC 1 cut(s) 559
MmeI TCCRAC 2 cut(s) 58, 633
MroI TCCGGA 1 cut(s) 145
MseI TTAA 5 cut(s) 189, 410, 807, 1335, 1492
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 4 cut(s) 115, 146, 845, 1052
MspR9I CCNGG 3 cut(s) 329, 846, 902
MunI CAATTG 2 cut(s) 490, 1003
MvaI CCWGG 2 cut(s) 329, 902
MwoI GCNNNNNNNGC 3 cut(s) 126, 455, 1154
NciI CCSGG 1 cut(s) 846
NdeII GATC 6 cut(s) 182, 655, 760, 876, 993, 1129
NlaIII CATG 7 cut(s) 380, 431, 524, 533, 651, 677, 928
NlaIV GGNNCC 5 cut(s) 538, 657, 995, 1260, 1261
NmuCI GTSAC 3 cut(s) 551, 593, 1162
NspI RCATGY 1 cut(s) 677
NspV TTCGAA 1 cut(s) 243
PagI TCATGA 1 cut(s) 376
PciI ACATGT 1 cut(s) 673
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 60
PfeI GAWTC 3 cut(s) 614, 794, 1224
PflFI GACNNNGTC 1 cut(s) 75
PkrI GCNGC 5 cut(s) 154, 451, 739, 864, 1441
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
PpuMI RGGWCCY 1 cut(s) 1259
PscI ACATGT 1 cut(s) 673
PsiI TTATAA 1 cut(s) 1125
Psp5II RGGWCCY 1 cut(s) 1259
Psp6I CCWGG 2 cut(s) 327, 900
PspFI CCCAGC 1 cut(s) 968
PspGI CCWGG 2 cut(s) 327, 900
PspN4I GGNNCC 5 cut(s) 538, 657, 995, 1260, 1261
PspPI GGNCC 2 cut(s) 537, 1259
PspPPI RGGWCCY 1 cut(s) 1259
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 4 cut(s) 182, 655, 876, 993
PsyI GACNNNGTC 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
SaqAI TTAA 5 cut(s) 189, 410, 807, 1335, 1492
SatI GCNGC 5 cut(s) 153, 450, 738, 863, 1440
Sau3AI GATC 6 cut(s) 182, 655, 760, 876, 993, 1129
Sau96I GGNCC 2 cut(s) 537, 1259
SchI GAGTC 1 cut(s) 559
ScrFI CCNGG 3 cut(s) 329, 846, 902
SfaNI GCATC 3 cut(s) 129, 1144, 1410
SfcI CTRYAG 2 cut(s) 153, 504
SfuI TTCGAA 1 cut(s) 243
SinI GGWCC 2 cut(s) 537, 1259
SmlI CTYRAG 1 cut(s) 937
SmoI CTYRAG 1 cut(s) 937
SsiI CCGC 3 cut(s) 449, 862, 1065
SspMI CTAG 4 cut(s) 98, 387, 885, 1068
StyD4I CCNGG 3 cut(s) 327, 844, 900
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 3 cut(s) 222, 258, 484
TaiI ACGT 2 cut(s) 76, 760
TaqI TCGA 4 cut(s) 243, 288, 612, 703
TauI GCSGC 2 cut(s) 452, 865
TfiI GAWTC 3 cut(s) 614, 794, 1224
Tru1I TTAA 5 cut(s) 189, 410, 807, 1335, 1492
Tru9I TTAA 5 cut(s) 189, 410, 807, 1335, 1492
TseFI GTSAC 3 cut(s) 551, 593, 1162
TseI GCWGC 3 cut(s) 152, 737, 1439
Tsp45I GTSAC 3 cut(s) 551, 593, 1162
TspGWI ACGGA 3 cut(s) 612, 730, 978
Tth111I GACNNNGTC 1 cut(s) 75
VpaK11BI GGWCC 2 cut(s) 537, 1259
XapI RAATTY 2 cut(s) 911, 1252
XbaI TCTAGA 2 cut(s) 386, 884
XceI RCATGY 1 cut(s) 677
XspI CTAG 4 cut(s) 98, 387, 885, 1068
ZraI GACGTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.