MD09G1136900.v1.1

UPF0586 protein C9orf41 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
10609835 .. 10615780
5946 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1136900.v1.1.491

Sequence Viewer

Length: 1503 bp
ATGCATCCTGTAGCAGCAGGAGGAGGAGTTGAGGACGAAGACGACGAACGACGTCGCCAGAGTAAGCTCGAAGAAGCTCTCGAAATCAAGTCCCTCAGGCGCATAATCAGCGCCTACCTCAACTACCCGGAGGCGTCAGAAGAGGACGTGAGACGATATGAAAGATCTTTCAGAATGCTTCCACCTGCCCATAAGGCTCTGTTATCCCACTACCCGTTAAAGCTTCAAAGACTAAGACGGTGCATCTCTGTAAATTCATATTTCATTTTTAACATGCTTCAGGCATTTGAACCCCCACTTGATTTGAGCCAGGACATAGATGTCTGTGATGGCCCCCATCTTGAAAACGTCCCAAATAATCACAATGTTTCTGGAGTAAATAATGTTTGCTCTTCTCAGTCTACCTCCGCCAGCGAAAGATTGCATATTTCCAATTCAGATCAGGTCTGTTATGAGGAAGGGAGCAACACAGTCCACAGTTCACCAATAGTGACTGCTAAAAAGGTTTCTGCAACACTTACACGACCATACAATAACGGTCATCGTGAGTCCATTACCGATGGACACACTTCAGGTGTGGAATATATTAGAGAGACACATAACTGTTGTGGGAATGATTCCAATGGAGATGTATCCTCACCATCTCGGACATGGTTGGATCCATCGTTACAGTTACATGTTCCGTTAGTTGATGTTGATAAGGTCCGTTGTATAGTACGGAACATAGTTAGAGACTGGGCGGCAGAGGGACAGAAAGAACGTGATCAGTGCTACAAGCCTATATTAGAAGAACTTGATGCACTATTTGCTGATCGCTCTAAGAAAAGTCCTCCTGCCTGTTTGGTTCCTGGTGCTGGACTTGGGCGGCTGGCTTTGGAAATCTCGTGTTTAGGTTTCATAAGCCAGGGAAATGAATTTTCATACTACATGATGATATGTTCAAATTTTATTCTTAATCATTGTCAAACTGCTGGGGAGTGGACAATATATCCTTGGATCCACAGCAATTGCAATTCACTTTCAGAGAGTGACCAACTTCGCCCCGTTACAGTACCAGATATTCATCCGGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGTGGCGACTTTGTTGAGGTTTACAACGATCCAAACCAAGTAGGTGTCTGGGATGCGGTTGTGACCTGCTTCTTTATTGATACGGCACACAACATTATTGAATACATAGAAATCATATCAAGAATCTTGAAGGATGGTGGAGTTTGGATAAATTTGGGTCCCCTACTATACCACTTTGCTGATGTCTATGGGCAAGATGAAATGTCTGTTGAACTGAGTTTGGAGGATGTGAGGAGGGTTGCCTTGCACTACGGATTTCATTTTGAGAAAGAAAGCAGCATTGAGACAACCTACACTACAAATCCTAGGTCAATGATGCAGAACCGATACTACGCCGCATTTTGGACAATGAGAAAGAGATCAGCAACAATGGAGCACCAACCTCCTTTAACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

501

Amino Acids

56.45

Weight (kDa)

5.34

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 223 - 488 1.9e-112 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012063)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
AasI GACNNNNNNGTC 1 cut(s) 320
AatII GACGTC 1 cut(s) 55
Acc36I ACCTGC 2 cut(s) 193, 1178
AccI GTMKAC 1 cut(s) 401
AciI CCGC 5 cut(s) 408, 740, 865, 1160, 1440
AclWI GGATC 5 cut(s) 653, 666, 991, 1004, 1127
AcsI RAATTY 4 cut(s) 253, 914, 943, 1255
AcuI CTGAAG 3 cut(s) 263, 555, 1107
AcyI GRCGYC 2 cut(s) 52, 134
AfaI GTAC 2 cut(s) 717, 1053
AfiI CCNNNNNNNGG 2 cut(s) 854, 1446
AflIII ACRYGT 1 cut(s) 676
AgsI TTSAA 7 cut(s) 227, 290, 344, 942, 1205, 1234, 1316
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 3 cut(s) 309, 847, 903
AluBI AGCT 3 cut(s) 67, 77, 223
AluI AGCT 3 cut(s) 67, 77, 223
Alw21I GWGCWC 1 cut(s) 1482
Alw26I GTCTC 4 cut(s) 145, 587, 726, 1382
AlwI GGATC 5 cut(s) 653, 666, 991, 1004, 1127
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 2 cut(s) 14, 1380
ApoI RAATTY 4 cut(s) 253, 914, 943, 1255
ArsI GACNNNNNNTTYG 2 cut(s) 1397, 1429
AspA2I CCTAGG 1 cut(s) 1409
AspLEI GCGC 2 cut(s) 102, 113
AspS9I GGNCC 3 cut(s) 332, 703, 1262
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 474, 630
AvaII GGWCC 2 cut(s) 703, 1262
AvrII CCTAGG 1 cut(s) 1409
AxyI CCTNAGG 1 cut(s) 95
BamHI GGATCC 2 cut(s) 658, 996
BauI CACGAG 1 cut(s) 883
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 1482
BbvI GCAGC 2 cut(s) 26, 1392
BccI CCATC 6 cut(s) 323, 345, 554, 649, 670, 1232
BceAI ACGGC 1 cut(s) 1203
BciT130I CCWGG 3 cut(s) 311, 849, 905
BciVI GTATCC 1 cut(s) 643
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 4 cut(s) 145, 587, 726, 1382
BfaI CTAG 2 cut(s) 1071, 1410
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 114
BfuAI ACCTGC 2 cut(s) 193, 1178
BfuI GTATCC 1 cut(s) 643
BglI GCCNNNNNGGC 1 cut(s) 194
BglII AGATCT 1 cut(s) 164
BisI GCNGC 5 cut(s) 15, 741, 866, 1381, 1440
BlnI CCTAGG 1 cut(s) 1409
BlsI GCNGC 5 cut(s) 16, 742, 867, 1382, 1441
Bme1390I CCNGG 4 cut(s) 128, 311, 849, 905
Bme18I GGWCC 2 cut(s) 703, 1262
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 332, 703, 1262
BmiI GGNNCC 6 cut(s) 334, 660, 846, 998, 1263, 1264
BmrFI CCNGG 4 cut(s) 128, 311, 849, 905
BmrI ACTGGG 1 cut(s) 745
BmsI GCATC 5 cut(s) 13, 252, 787, 1147, 1410
BmuI ACTGGG 1 cut(s) 745
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 393
BpuMI CCSGG 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 1062
BsaHI GRCGYC 2 cut(s) 52, 134
BsaJI CCNNGG 3 cut(s) 904, 992, 1409
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 2 cut(s) 854, 1446
Bse1I ACTGG 1 cut(s) 740
Bse21I CCTNAGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 1062
BseBI CCWGG 3 cut(s) 311, 849, 905
BseDI CCNNGG 3 cut(s) 904, 992, 1409
BseGI GGATG 5 cut(s) 4, 1063, 1162, 1243, 1336
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 2 cut(s) 854, 1446
BseMII CTCAG 3 cut(s) 109, 410, 1310
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 3 cut(s) 36, 39, 1351
BseXI GCAGC 2 cut(s) 26, 1392
BseYI CCCAGC 1 cut(s) 971
BsgI GTGCAG 1 cut(s) 1095
BshFI GGCC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 1482
BsiSI CCGG 2 cut(s) 128, 1067
BslFI GGGAC 4 cut(s) 76, 335, 762, 1248
BslI CCNNNNNNNGG 2 cut(s) 854, 1446
BsmAI GTCTC 4 cut(s) 145, 587, 726, 1382
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 4 cut(s) 76, 335, 762, 1248
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 1482
Bsp143I GATC 8 cut(s) 164, 439, 658, 763, 811, 996, 1132, 1463
BspACI CCGC 5 cut(s) 408, 740, 865, 1160, 1440
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 3 cut(s) 108, 409, 1311
BspLI GGNNCC 6 cut(s) 334, 660, 846, 998, 1263, 1264
BspMI ACCTGC 2 cut(s) 193, 1178
BspPI GGATC 5 cut(s) 653, 666, 991, 1004, 1127
BspQI GCTCTTC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 3 cut(s) 904, 992, 1409
BssMI GATC 8 cut(s) 164, 439, 658, 763, 811, 996, 1132, 1463
BssNI GRCGYC 2 cut(s) 52, 134
BssSI CACGAG 1 cut(s) 883
BssT1I CCWWGG 2 cut(s) 992, 1409
Bst2BI CACGAG 1 cut(s) 883
Bst2UI CCWGG 3 cut(s) 311, 849, 905
Bst4CI ACNGT 7 cut(s) 240, 472, 479, 539, 605, 672, 1051
Bst6I CTCTTC 2 cut(s) 135, 397
BstACI GRCGYC 2 cut(s) 52, 134
BstAPI GCANNNNNTGC 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 412, 870
BstDEI CTNAG 5 cut(s) 95, 233, 396, 819, 1319
BstF5I GGATG 5 cut(s) 4, 1063, 1162, 1243, 1336
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 2 cut(s) 102, 113
BstKTI GATC 8 cut(s) 167, 442, 661, 766, 814, 999, 1135, 1466
BstMAI GTCTC 4 cut(s) 145, 587, 726, 1382
BstMBI GATC 8 cut(s) 164, 439, 658, 763, 811, 996, 1132, 1463
BstMWI GCNNNNNNNGC 3 cut(s) 108, 194, 806
BstNI CCWGG 3 cut(s) 311, 849, 905
BstNSI RCATGY 2 cut(s) 277, 680
BstSCI CCNGG 4 cut(s) 126, 309, 847, 903
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 26, 1392
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 3 cut(s) 164, 658, 996
BstYI RGATCY 3 cut(s) 164, 658, 996
Bsu36I CCTNAGG 1 cut(s) 95
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 1 cut(s) 333
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 5 cut(s) 4, 1063, 1162, 1243, 1336
BtsIMutI CAGTG 1 cut(s) 773
BveI ACCTGC 2 cut(s) 193, 1178
Cac8I GCNNGC 2 cut(s) 412, 870
CfoI GCGC 2 cut(s) 102, 113
Cfr13I GGNCC 3 cut(s) 332, 703, 1262
CseI GACGC 1 cut(s) 123
Csp6I GTAC 2 cut(s) 716, 1052
CspCI CAANNNNNGTGG 4 cut(s) 285, 320, 989, 1024
CviAII CATG 4 cut(s) 274, 651, 677, 928
CviQI GTAC 2 cut(s) 716, 1052
DdeI CTNAG 5 cut(s) 95, 233, 396, 819, 1319
DpnI GATC 8 cut(s) 166, 441, 660, 765, 813, 998, 1134, 1465
DpnII GATC 8 cut(s) 164, 439, 658, 763, 811, 996, 1132, 1463
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 135, 397
EarI CTCTTC 2 cut(s) 135, 397
EciI GGCGGA 1 cut(s) 397
Eco130I CCWWGG 2 cut(s) 992, 1409
Eco47I GGWCC 2 cut(s) 703, 1262
Eco57I CTGAAG 3 cut(s) 263, 555, 1107
Eco81I CCTNAGG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 1262
EcoRII CCWGG 3 cut(s) 309, 847, 903
EcoT14I CCWWGG 2 cut(s) 992, 1409
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 992, 1409
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 4 cut(s) 277, 654, 680, 931
FaqI GGGAC 4 cut(s) 76, 335, 762, 1248
FatI CATG 4 cut(s) 273, 650, 676, 927
FbaI TGATCA 1 cut(s) 763
FblI GTMKAC 1 cut(s) 401
Fnu4HI GCNGC 5 cut(s) 15, 741, 866, 1381, 1440
FokI GGATG 4 cut(s) 1050, 1169, 1250, 1343
Fsp4HI GCNGC 5 cut(s) 15, 741, 866, 1381, 1440
FspBI CTAG 2 cut(s) 1071, 1410
GlaI GCGC 2 cut(s) 101, 112
GluI GCNGC 5 cut(s) 15, 741, 866, 1381, 1440
GsaI CCCAGC 1 cut(s) 975
GsuI CTGGAG 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 1 cut(s) 333
HapII CCGG 2 cut(s) 128, 1067
HgaI GACGC 1 cut(s) 123
HhaI GCGC 2 cut(s) 102, 113
Hin1I GRCGYC 2 cut(s) 52, 134
Hin1II CATG 4 cut(s) 277, 654, 680, 931
Hin6I GCGC 2 cut(s) 100, 111
HinP1I GCGC 2 cut(s) 100, 111
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 548, 617, 1227
HpaII CCGG 2 cut(s) 128, 1067
HphI GGTGA 2 cut(s) 474, 630
Hpy166II GTNNAC 5 cut(s) 402, 475, 482, 981, 1126
Hpy188I TCNGA 5 cut(s) 139, 173, 439, 648, 1024
Hpy188III TCNNGA 6 cut(s) 80, 341, 372, 545, 1224, 1231
Hpy8I GTNNAC 5 cut(s) 402, 475, 482, 981, 1126
Hpy99I CGWCG 3 cut(s) 47, 54, 57
HpyAV CCTTC 3 cut(s) 452, 1082, 1228
HpyCH4III ACNGT 7 cut(s) 240, 472, 479, 539, 605, 672, 1051
HpyCH4IV ACGT 4 cut(s) 52, 147, 348, 760
HpyCH4V TGCA 9 cut(s) 4, 243, 424, 512, 800, 1011, 1076, 1351, 1423
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 194, 806
HpyF3I CTNAG 5 cut(s) 95, 233, 396, 819, 1319
HpySE526I ACGT 4 cut(s) 52, 147, 348, 760
Hsp92I GRCGYC 2 cut(s) 52, 134
Hsp92II CATG 4 cut(s) 277, 654, 680, 931
HspAI GCGC 2 cut(s) 100, 111
KflI GGGWCCC 1 cut(s) 1262
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 8 cut(s) 164, 439, 658, 763, 811, 996, 1132, 1463
LguI GCTCTTC 1 cut(s) 397
LmnI GCTCC 2 cut(s) 462, 1477
Lsp1109I GCAGC 2 cut(s) 26, 1392
LweI GCATC 5 cut(s) 13, 252, 787, 1147, 1410
MaeI CTAG 2 cut(s) 1071, 1410
MaeII ACGT 4 cut(s) 52, 147, 348, 760
MaeIII GTNAC 6 cut(s) 490, 666, 672, 1028, 1045, 1165
MalI GATC 8 cut(s) 166, 441, 660, 765, 813, 998, 1134, 1465
MboI GATC 8 cut(s) 164, 439, 658, 763, 811, 996, 1132, 1463
MboII GAAGA 5 cut(s) 50, 83, 152, 384, 800
MfeI CAATTG 1 cut(s) 1006
MflI RGATCY 3 cut(s) 164, 658, 996
MhlI GDGCHC 1 cut(s) 1482
MluCI AATT 7 cut(s) 253, 433, 914, 943, 1006, 1012, 1255
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 636
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 218, 270, 954, 1493
MspI CCGG 2 cut(s) 128, 1067
MspR9I CCNGG 4 cut(s) 128, 311, 849, 905
MunI CAATTG 1 cut(s) 1006
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 3 cut(s) 311, 849, 905
MwoI GCNNNNNNNGC 3 cut(s) 108, 194, 806
NciI CCSGG 1 cut(s) 128
NdeII GATC 8 cut(s) 164, 439, 658, 763, 811, 996, 1132, 1463
NlaIII CATG 4 cut(s) 277, 654, 680, 931
NlaIV GGNNCC 6 cut(s) 334, 660, 846, 998, 1263, 1264
NmuCI GTSAC 3 cut(s) 490, 1028, 1165
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 277, 680
PaqCI CACCTGC 1 cut(s) 193
PciI ACATGT 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 617, 1227
PkrI GCNGC 5 cut(s) 16, 742, 867, 1382, 1441
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PpuMI RGGWCCY 1 cut(s) 1262
PscI ACATGT 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 1262
Psp6I CCWGG 3 cut(s) 309, 847, 903
PspFI CCCAGC 1 cut(s) 971
PspGI CCWGG 3 cut(s) 309, 847, 903
PspN4I GGNNCC 6 cut(s) 334, 660, 846, 998, 1263, 1264
PspPI GGNCC 3 cut(s) 332, 703, 1262
PspPPI RGGWCCY 1 cut(s) 1262
PsrI GAACNNNNNNTAC 2 cut(s) 1418, 1450
PsuI RGATCY 3 cut(s) 164, 658, 996
RsaI GTAC 2 cut(s) 717, 1053
RsaNI GTAC 2 cut(s) 716, 1052
SapI GCTCTTC 1 cut(s) 397
SaqAI TTAA 4 cut(s) 218, 270, 954, 1493
SatI GCNGC 5 cut(s) 15, 741, 866, 1381, 1440
Sau3AI GATC 8 cut(s) 164, 439, 658, 763, 811, 996, 1132, 1463
Sau96I GGNCC 3 cut(s) 332, 703, 1262
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 4 cut(s) 128, 311, 849, 905
SduI GDGCHC 1 cut(s) 1482
SfaNI GCATC 5 cut(s) 13, 252, 787, 1147, 1410
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 2 cut(s) 703, 1262
Sse9I AATT 7 cut(s) 253, 433, 914, 943, 1006, 1012, 1255
SsiI CCGC 5 cut(s) 408, 740, 865, 1160, 1440
SspMI CTAG 2 cut(s) 1071, 1410
StyD4I CCNGG 4 cut(s) 126, 309, 847, 903
StyI CCWWGG 2 cut(s) 992, 1409
TaaI ACNGT 7 cut(s) 240, 472, 479, 539, 605, 672, 1051
TaiI ACGT 4 cut(s) 55, 150, 351, 763
TaqI TCGA 2 cut(s) 69, 81
TasI AATT 7 cut(s) 253, 433, 914, 943, 1006, 1012, 1255
TauI GCSGC 3 cut(s) 743, 868, 1442
TfiI GAWTC 2 cut(s) 617, 1227
Tru1I TTAA 4 cut(s) 218, 270, 954, 1493
Tru9I TTAA 4 cut(s) 218, 270, 954, 1493
TscAI CASTG 1 cut(s) 773
TseFI GTSAC 3 cut(s) 490, 1028, 1165
TseI GCWGC 2 cut(s) 14, 1380
Tsp45I GTSAC 3 cut(s) 490, 1028, 1165
TspDTI ATGAA 9 cut(s) 174, 246, 253, 886, 909, 927, 1052, 1317, 1352
TspGWI ACGGA 4 cut(s) 672, 695, 733, 1371
TspRI CASTG 1 cut(s) 773
VpaK11BI GGWCC 2 cut(s) 703, 1262
XapI RAATTY 4 cut(s) 253, 914, 943, 1255
XceI RCATGY 2 cut(s) 277, 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 648
XmaJI CCTAGG 1 cut(s) 1409
XmiI GTMKAC 1 cut(s) 401
XspI CTAG 2 cut(s) 1071, 1410
ZraI GACGTC 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.