Rh2AG506700

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012063
Physical Location & Seq
Reverse (-)
72887865 .. 72896587
8723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG506700.1

Sequence Viewer

Length: 1521 bp
ATGTCAGTCCCAATGAACGAGACTCTGATTCTCCGAAGAGAAGAAGAAGAAGACGACGAGGAACGACGTCGTCAAAGGAAGCTCGAAGAAGCCCTAGAAATCAAATCTCTCAGGCGCATCATCAGCGCCTACCTCAACTATCCGGAGGCTGCAGAAGAGGACGTGAGAAGATATGAAAGATCTTTTAAATTGCTTCCACCAGCCCATAAGGCTCTACTGTCTCACTACCCTTCTAAGTTTGAAAGACTAAGACGGTGTATTTCTGCCAATTCATATTTCATTTTCGATATGCTTCAGGAATTTGAACCCCCACTTGATTTGAGCCAGGATGTAGATGTTTGTGATGGCCTACATCTTGAAAACATCCCATCTGATCATGATGATTCTAGAGTAACAAATTGCTCTTCTCAATCAACCTCCACAAGTCTAAGTATGCGTGTCTCCGAATCTGATCATTCCTGTCTGGGTCTGGTGGAAGGGAGCAACAGAGTCTGCAATTCACCAGTAGGGGAGGAGAAGCATGAAGGTCATGGTGAGTCCATCAATGGGAGTCACACTTTAAGCTTGGAATATACCAAACAGATACATAATTGTCATGCGAATAATGCCATTGATTCCAATGGAAATGTGTCCTCATCAATGCGCACGTGGTTGGATCCATCAATTCAATTACATGTTCCATTAGTTGATGTTGATAAGGTTCGATGTATTATACGGAACATAGTTAGAGACTGGGCAGCAGAGGGTCAGAAAGAACGTGATCAATGCTACAGGCCTATACTTGAAGAACTTGATTCACTATTTGTTGATCGCTGTAAGGAAAGCCCTCCTGCCTGTTTAGTTCCTGGTGCTGGACTTGGGCGGCTTGCATTGGAGATCTCATGTCGAGGTTTCATTAGCCAGGGAAATGAATTTTCATACTACATGATGATATGCTCAAGTTTTATTCTCAATGTTTGTCAAACTGCTGGGGAGTGGACAATATATCCGTGGATCCACAGCAATTGTAATTCACTTTCAGATGATGACCAACTTCGTCCCGTTTCAATACCAGATATTCATCCCGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAACGATCCAAGCCAAGTAGGTGCTTGGGATGCAGTTGTGACCTGTTTCTTTATTGATACGGCACACAACATTGTTGAATACATTGAAATCATATCAAGAATCTTGAAAGAAGGAGGCGTTTGGATAAATATGGGTCCCCTACTATATCACTTTGCAGATGTATATGGACAAGGAGATGATATGTCTATTGAACTGAGTTTGGAGGATGTGAAGAGGGTTGCTTTGCATTATGGATTTCATATAGAGAAGGAAAAGACCATTGAGACAACCTACACTACAAATCCCAGATCAATGATGCAAGTAAGTATCCCCAAGAGCCCAAGTACTGAAGCTTTTCCTTTTTTCTTTTTTGTCCCTCTTTTATTGTATGAGATCTTTGTATTTTTTTATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

506

Amino Acids

57.53

Weight (kDa)

4.88

Isoelectric Point (pI)

59.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 223 - 476 6.9e-107 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32170 AT2G32170
fragaria_vesca FvH4_6g39770 FvH4_6g39770
malus_domestica MD09G1136900.v1.1 MD17G1127100.v1.1
prunus_persica Prupe.3G188100_v2.0.a1
pyrus_communis pycom09g05780 pycom17g11940
rosa_chinensis RchiOBHm_Chr2g0153881
rosa_laevigata RLG00000020736
rosa_multiflora Rmu_sc0003887.1_g000010
rosa_roxburghii Rroxscaffold_2G00094680
rosa_rugosa Rorug02G0443000
rosa_samantha Rh2AG506700 Rh2BG516700 Rh2CG492400 Rh2DG528800
rosa_wichuraiana Rw2G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1125
AatII GACGTC 1 cut(s) 70
Acc16I TGCGCA 1 cut(s) 644
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 3 cut(s) 862, 1065, 1104
AclWI GGATC 5 cut(s) 650, 663, 988, 1001, 1124
AcsI RAATTY 2 cut(s) 299, 911
AcuI CTGAAG 3 cut(s) 278, 1104, 1473
AcvI CACGTG 1 cut(s) 648
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 1 cut(s) 1450
AfiI CCNNNNNNNGG 2 cut(s) 546, 851
AflIII ACRYGT 1 cut(s) 673
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 3 cut(s) 324, 844, 900
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 3 cut(s) 82, 564, 1457
AluI AGCT 3 cut(s) 82, 564, 1457
Alw26I GTCTC 5 cut(s) 14, 225, 445, 723, 1382
AlwI GGATC 5 cut(s) 650, 663, 988, 1001, 1124
AlwNI CAGNNNCTG 1 cut(s) 492
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 2 cut(s) 346, 773
ApeKI GCWGC 2 cut(s) 149, 737
ApoI RAATTY 2 cut(s) 299, 911
Asp700I GAANNNNTTC 1 cut(s) 1458
AspLEI GCGC 3 cut(s) 117, 128, 645
AspS9I GGNCC 1 cut(s) 1259
AsuHPI GGTGA 3 cut(s) 492, 545, 1118
AvaII GGWCC 1 cut(s) 1259
BamHI GGATCC 2 cut(s) 655, 993
BanII GRGCYC 1 cut(s) 1445
BbrPI CACGTG 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 136, 749
BccI CCATC 4 cut(s) 338, 376, 548, 667
BceAI ACGGC 1 cut(s) 1200
BciT130I CCWGG 3 cut(s) 326, 846, 902
BciVI GTATCC 1 cut(s) 1442
BclI TGATCA 3 cut(s) 373, 451, 760
BcoDI GTCTC 5 cut(s) 14, 225, 445, 723, 1382
BfaI CTAG 3 cut(s) 95, 387, 1068
BfmI CTRYAG 2 cut(s) 150, 769
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 1442
BglI GCCNNNNNGGC 1 cut(s) 209
BglII AGATCT 3 cut(s) 179, 876, 1497
BisI GCNGC 3 cut(s) 150, 738, 863
BlsI GCNGC 3 cut(s) 151, 739, 864
BmcAI AGTACT 1 cut(s) 1450
Bme1390I CCNGG 3 cut(s) 326, 846, 902
Bme18I GGWCC 1 cut(s) 1259
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 1259
BmiI GGNNCC 4 cut(s) 657, 995, 1260, 1261
BmrFI CCNGG 3 cut(s) 326, 846, 902
BmrI ACTGGG 1 cut(s) 742
BmsI GCATC 3 cut(s) 126, 1144, 1410
BmuI ACTGGG 1 cut(s) 742
BpiI GAAGAC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 922
BsaAI YACGTR 1 cut(s) 648
BsaBI GATNNNNATC 1 cut(s) 1059
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 2 cut(s) 901, 989
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 546, 851
Bse1I ACTGG 2 cut(s) 503, 737
Bse8I GATNNNNATC 1 cut(s) 1059
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 3 cut(s) 326, 846, 902
BseDI CCNNGG 2 cut(s) 901, 989
BseGI GGATG 5 cut(s) 334, 363, 1060, 1159, 1336
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 2 cut(s) 546, 851
BseMII CTCAG 2 cut(s) 124, 1310
BseNI ACTGG 2 cut(s) 503, 737
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 136, 749
BseYI CCCAGC 1 cut(s) 968
BsgI GTGCAG 1 cut(s) 1092
BshFI GGCC 2 cut(s) 348, 775
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 3 cut(s) 1023, 1245, 1463
BslI CCNNNNNNNGG 2 cut(s) 546, 851
BsmAI GTCTC 5 cut(s) 14, 225, 445, 723, 1382
BsmFI GGGAC 3 cut(s) 1023, 1245, 1463
BsnI GGCC 2 cut(s) 348, 775
Bsp1286I GDGCHC 1 cut(s) 1445
Bsp13I TCCGGA 1 cut(s) 142
BspACI CCGC 3 cut(s) 862, 1065, 1104
BspANI GGCC 2 cut(s) 348, 775
BspCNI CTCAG 2 cut(s) 123, 1311
BspEI TCCGGA 1 cut(s) 142
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 4 cut(s) 657, 995, 1260, 1261
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 5 cut(s) 650, 663, 988, 1001, 1124
BspQI GCTCTTC 1 cut(s) 409
BsrI ACTGG 2 cut(s) 503, 737
BssECI CCNNGG 2 cut(s) 901, 989
BssNI GRCGYC 1 cut(s) 67
Bst2UI CCWGG 3 cut(s) 326, 846, 902
Bst4CI ACNGT 2 cut(s) 219, 255
Bst6I CTCTTC 4 cut(s) 31, 150, 409, 1331
BstACI GRCGYC 1 cut(s) 67
BstBAI YACGTR 1 cut(s) 648
BstC8I GCNNGC 1 cut(s) 867
BstDEI CTNAG 5 cut(s) 110, 234, 248, 428, 1319
BstDSI CCRYGG 1 cut(s) 989
BstF5I GGATG 5 cut(s) 334, 363, 1060, 1159, 1336
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 3 cut(s) 117, 128, 645
BstMAI GTCTC 5 cut(s) 14, 225, 445, 723, 1382
BstMWI GCNNNNNNNGC 4 cut(s) 123, 209, 605, 1154
BstNI CCWGG 3 cut(s) 326, 846, 902
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 3 cut(s) 324, 844, 900
BstSFI CTRYAG 2 cut(s) 150, 769
BstV1I GCAGC 2 cut(s) 136, 749
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 5 cut(s) 179, 655, 876, 993, 1497
BstYI RGATCY 5 cut(s) 179, 655, 876, 993, 1497
BsuI GTATCC 1 cut(s) 1442
BsuRI GGCC 2 cut(s) 348, 775
BtgI CCRYGG 1 cut(s) 989
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 5 cut(s) 334, 363, 1060, 1159, 1336
Cac8I GCNNGC 1 cut(s) 867
CaiI CAGNNNCTG 1 cut(s) 492
CciI TCATGA 1 cut(s) 376
CfoI GCGC 3 cut(s) 117, 128, 645
Cfr13I GGNCC 1 cut(s) 1259
Csp6I GTAC 1 cut(s) 1449
CspCI CAANNNNNGTGG 4 cut(s) 300, 335, 986, 1021
CviAII CATG 7 cut(s) 377, 521, 530, 596, 674, 882, 925
CviQI GTAC 1 cut(s) 1449
DdeI CTNAG 5 cut(s) 110, 234, 248, 428, 1319
DraI TTTAAA 1 cut(s) 187
Eam1104I CTCTTC 4 cut(s) 31, 150, 409, 1331
EarI CTCTTC 4 cut(s) 31, 150, 409, 1331
Eco147I AGGCCT 1 cut(s) 775
Eco24I GRGCYC 1 cut(s) 1445
Eco47I GGWCC 1 cut(s) 1259
Eco57I CTGAAG 3 cut(s) 278, 1104, 1473
Eco72I CACGTG 1 cut(s) 648
EcoO109I RGGNCCY 1 cut(s) 1259
EcoRII CCWGG 3 cut(s) 324, 844, 900
EcoT38I GRGCYC 1 cut(s) 1445
FaeI CATG 7 cut(s) 380, 524, 533, 599, 677, 885, 928
FaqI GGGAC 3 cut(s) 1023, 1245, 1463
FatI CATG 7 cut(s) 376, 520, 529, 595, 673, 881, 924
FauI CCCGC 1 cut(s) 1072
FbaI TGATCA 3 cut(s) 373, 451, 760
Fnu4HI GCNGC 3 cut(s) 150, 738, 863
FokI GGATG 5 cut(s) 341, 350, 1047, 1166, 1343
FriOI GRGCYC 1 cut(s) 1445
Fsp4HI GCNGC 3 cut(s) 150, 738, 863
FspAI RTGCGCAY 1 cut(s) 644
FspBI CTAG 3 cut(s) 95, 387, 1068
FspI TGCGCA 1 cut(s) 644
GlaI GCGC 3 cut(s) 116, 127, 644
GluI GCNGC 3 cut(s) 150, 738, 863
GsaI CCCAGC 1 cut(s) 972
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 348, 775
HapII CCGG 1 cut(s) 143
HhaI GCGC 3 cut(s) 117, 128, 645
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 7 cut(s) 380, 524, 533, 599, 677, 885, 928
Hin6I GCGC 3 cut(s) 115, 126, 643
HinP1I GCGC 3 cut(s) 115, 126, 643
HindIII AAGCTT 2 cut(s) 562, 1455
HpaII CCGG 1 cut(s) 143
HphI GGTGA 3 cut(s) 492, 545, 1118
Hpy166II GTNNAC 1 cut(s) 978
Hpy188I TCNGA 7 cut(s) 27, 35, 373, 445, 451, 750, 1021
Hpy188III TCNNGA 7 cut(s) 143, 296, 356, 377, 387, 1221, 1228
Hpy8I GTNNAC 1 cut(s) 978
Hpy99I CGWCG 3 cut(s) 59, 69, 72
HpyAV CCTTC 6 cut(s) 240, 470, 518, 1079, 1229, 1366
HpyCH4III ACNGT 2 cut(s) 219, 255
HpyCH4IV ACGT 4 cut(s) 67, 162, 647, 757
HpyCH4V TGCA 8 cut(s) 152, 495, 869, 1073, 1157, 1280, 1351, 1423
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 209, 605, 1154
HpyF3I CTNAG 5 cut(s) 110, 234, 248, 428, 1319
HpySE526I ACGT 4 cut(s) 67, 162, 647, 757
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 7 cut(s) 380, 524, 533, 599, 677, 885, 928
HspAI GCGC 3 cut(s) 115, 126, 643
KflI GGGWCCC 1 cut(s) 1259
Kpn2I TCCGGA 1 cut(s) 142
Ksp22I TGATCA 3 cut(s) 373, 451, 760
LguI GCTCTTC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 2 cut(s) 136, 749
LweI GCATC 3 cut(s) 126, 1144, 1410
MaeI CTAG 3 cut(s) 95, 387, 1068
MaeII ACGT 4 cut(s) 67, 162, 647, 757
MaeIII GTNAC 4 cut(s) 391, 551, 1106, 1162
MfeI CAATTG 1 cut(s) 1003
MflI RGATCY 5 cut(s) 179, 655, 876, 993, 1497
MhlI GDGCHC 1 cut(s) 1445
MlyI GAGTC 4 cut(s) 16, 498, 545, 559
MmeI TCCRAC 1 cut(s) 633
MroI TCCGGA 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 1458
MseI TTAA 2 cut(s) 186, 560
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 3 cut(s) 326, 846, 902
MunI CAATTG 1 cut(s) 1003
MvaI CCWGG 3 cut(s) 326, 846, 902
MwoI GCNNNNNNNGC 4 cut(s) 123, 209, 605, 1154
NlaIII CATG 7 cut(s) 380, 524, 533, 599, 677, 885, 928
NlaIV GGNNCC 4 cut(s) 657, 995, 1260, 1261
NmuCI GTSAC 3 cut(s) 551, 1106, 1162
NsbI TGCGCA 1 cut(s) 644
NspI RCATGY 1 cut(s) 677
PagI TCATGA 1 cut(s) 376
PceI AGGCCT 1 cut(s) 775
PciI ACATGT 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 1458
PfeI GAWTC 6 cut(s) 28, 383, 446, 614, 794, 1224
PflFI GACNNNGTC 1 cut(s) 69
PkrI GCNGC 3 cut(s) 151, 739, 864
PleI GAGTC 4 cut(s) 16, 497, 544, 558
PmaCI CACGTG 1 cut(s) 648
PmlI CACGTG 1 cut(s) 648
PpsI GAGTC 4 cut(s) 16, 497, 544, 558
Ppu21I YACGTR 1 cut(s) 648
PpuMI RGGWCCY 1 cut(s) 1259
PscI ACATGT 1 cut(s) 673
PsiI TTATAA 1 cut(s) 1125
Psp5II RGGWCCY 1 cut(s) 1259
Psp6I CCWGG 3 cut(s) 324, 844, 900
PspCI CACGTG 1 cut(s) 648
PspFI CCCAGC 1 cut(s) 968
PspGI CCWGG 3 cut(s) 324, 844, 900
PspN4I GGNNCC 4 cut(s) 657, 995, 1260, 1261
PspPI GGNCC 1 cut(s) 1259
PspPPI RGGWCCY 1 cut(s) 1259
PstI CTGCAG 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 492
PsuI RGATCY 5 cut(s) 179, 655, 876, 993, 1497
PsyI GACNNNGTC 1 cut(s) 69
RsaI GTAC 1 cut(s) 1450
RsaNI GTAC 1 cut(s) 1449
SapI GCTCTTC 1 cut(s) 409
SaqAI TTAA 2 cut(s) 186, 560
SatI GCNGC 3 cut(s) 150, 738, 863
Sau96I GGNCC 1 cut(s) 1259
ScaI AGTACT 1 cut(s) 1450
SchI GAGTC 4 cut(s) 16, 498, 545, 559
ScrFI CCNGG 3 cut(s) 326, 846, 902
SduI GDGCHC 1 cut(s) 1445
SfaNI GCATC 3 cut(s) 126, 1144, 1410
SfcI CTRYAG 2 cut(s) 150, 769
SinI GGWCC 1 cut(s) 1259
SmlI CTYRAG 1 cut(s) 937
SmoI CTYRAG 1 cut(s) 937
SseBI AGGCCT 1 cut(s) 775
SsiI CCGC 3 cut(s) 862, 1065, 1104
SspMI CTAG 3 cut(s) 95, 387, 1068
StuI AGGCCT 1 cut(s) 775
StyD4I CCNGG 3 cut(s) 324, 844, 900
TaaI ACNGT 2 cut(s) 219, 255
TaiI ACGT 4 cut(s) 70, 165, 650, 760
TaqI TCGA 4 cut(s) 84, 285, 703, 886
TatI WGTACW 1 cut(s) 1448
TauI GCSGC 1 cut(s) 865
TfiI GAWTC 6 cut(s) 28, 383, 446, 614, 794, 1224
Tru1I TTAA 2 cut(s) 186, 560
Tru9I TTAA 2 cut(s) 186, 560
TseFI GTSAC 3 cut(s) 551, 1106, 1162
TseI GCWGC 2 cut(s) 149, 737
Tsp45I GTSAC 3 cut(s) 551, 1106, 1162
TspGWI ACGGA 2 cut(s) 730, 978
Tth111I GACNNNGTC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 1259
XapI RAATTY 2 cut(s) 299, 911
XbaI TCTAGA 1 cut(s) 386
XceI RCATGY 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 1458
XspI CTAG 3 cut(s) 95, 387, 1068
ZraI GACGTC 1 cut(s) 68
ZrmI AGTACT 1 cut(s) 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.