pycom09g05780

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012063
Physical Location & Seq
Forward (+)
4318286 .. 4323727
5442 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05780.13

Sequence Viewer

Length: 1332 bp
ATGCATCCAGTAGCAGCAGGAGGAGGAGTTGAGGACGAAGACGACGAACGACGTCGCCAGAGTAAGCTCGAAGAAGCTCTCGAAATCAAGTCCCTCAGGCGCATAATCAGCGCCTACCTCAACTATCCGGAGGCGTCAGAAGAGGACGTGAGACGATGTGAAAGATCTTTCAGAATGCTTCCACCTGCCCATAAGGCTCTGTTATCCCACTACCCGTTAAAGTTTCAAAGACTAAGACGGTGCATCTCTGTAAATTCATATTTCATTTTTAACATCCTTCAGGCATTTGAACCCCCACTTGATTTGAGCCAGGACATAGATGTCTGCGATGGCCCCCATCTTGAAAACGTCCCAAATAATCACAATGTTTCTGGAGTGAATAATGTTTGCTCTTCTCAGTCTACCTGCGCTAGCGAAAGATTGCATACTTCCAATTCTGATCAGGCCTGTTATGAGGAAGGGAGCAACACAGTCCACAGTTCACCAATAGTGACTACTAATAAGGTATCCTCACCATCTCGGACATGGTTGGATCCATCATTACAGTTACATGTTCCGTTAGTTGATGTTGATAAGGGACAGAAAGAACGTGATCAGTGCTACAAGCCTATATTAGAAGAACTTGATGCACTATTTGCTGATCGCTCTAAGAAAAGTCCTCCTGCCTGTTTGGTTCCTGGTGCTGGACTTGGGCGGTTGGCTTTGGAAATCTCGTGTTTAGGTTTCATAAGCCAGGGAAATGAATTTTCATACTACATGATGATATGTTCAAATTTTATTCTTAATCATTGTCAAACTGCTGGGGAGTGCACAATATATCCTTGGATCCACAGCAATTGCAATTCACTTTCAGATAGTGACCAACTTCGCCCCGTTACAGTACCAGATATTCATCCGGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGTGGCGACTTTGTTGAGGTTTACAACGATCCAAACCAAGTAGGTGTCTGGGATGCGGTTGTGACCTGCTTCTTTATTGATACGGCACACAACATTGTTGAATACATAGAAATCATATCAAGAATCTTGAAGGATGGTGGAGTTTGGATAAATTTGGGTCCCCTACTATACCACTTTGCTGATGTCTATGGGCAAGATGAAATGTCTGTTGAACTGAGTTTGGAGGATGTGAGGAGGGTTGCCTTGCACTACGGATTTCATTTTGAGAAAGAAAGCACCGTTGAGACAACCTACACTACAAATCCTAGGTCAATGATGCAGAACCAATACTACGCCGCATTTTGGACAATGAGAAAGAGATCAGCAACAATGGAGCACCAACCTCCTTTAACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

444

Amino Acids

49.92

Weight (kDa)

5.16

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32170 AT2G32170
fragaria_vesca FvH4_6g39770 FvH4_6g39770
malus_domestica MD09G1136900.v1.1 MD17G1127100.v1.1
prunus_persica Prupe.3G188100_v2.0.a1
pyrus_communis pycom09g05780 pycom17g11940
rosa_chinensis RchiOBHm_Chr2g0153881
rosa_laevigata RLG00000020736
rosa_multiflora Rmu_sc0003887.1_g000010
rosa_roxburghii Rroxscaffold_2G00094680
rosa_rugosa Rorug02G0443000
rosa_samantha Rh2AG506700 Rh2BG516700 Rh2CG492400 Rh2DG528800
rosa_wichuraiana Rw2G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
AasI GACNNNNNNGTC 1 cut(s) 320
AatII GACGTC 1 cut(s) 55
Acc36I ACCTGC 3 cut(s) 193, 413, 1007
AccI GTMKAC 1 cut(s) 401
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 3 cut(s) 694, 989, 1269
AclWI GGATC 5 cut(s) 527, 540, 820, 833, 956
AcsI RAATTY 4 cut(s) 253, 743, 772, 1084
AcuI CTGAAG 2 cut(s) 263, 936
AcyI GRCGYC 2 cut(s) 52, 134
AfaI GTAC 1 cut(s) 882
AfiI CCNNNNNNNGG 2 cut(s) 683, 1275
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 7 cut(s) 227, 290, 344, 771, 1034, 1063, 1145
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 3 cut(s) 309, 676, 732
AluBI AGCT 2 cut(s) 67, 77
AluI AGCT 2 cut(s) 67, 77
Alw21I GWGCWC 2 cut(s) 812, 1311
Alw26I GTCTC 2 cut(s) 145, 1211
Alw44I GTGCAC 1 cut(s) 808
AlwI GGATC 5 cut(s) 527, 540, 820, 833, 956
Aor13HI TCCGGA 1 cut(s) 127
AoxI GGCC 2 cut(s) 331, 444
ApaLI GTGCAC 1 cut(s) 808
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 4 cut(s) 253, 743, 772, 1084
ArsI GACNNNNNNTTYG 2 cut(s) 1226, 1258
AspA2I CCTAGG 1 cut(s) 1238
AspLEI GCGC 3 cut(s) 102, 113, 410
AspS9I GGNCC 2 cut(s) 332, 1091
AsuHPI GGTGA 2 cut(s) 474, 504
AsuNHI GCTAGC 1 cut(s) 410
AvaII GGWCC 1 cut(s) 1091
AvrII CCTAGG 1 cut(s) 1238
AxyI CCTNAGG 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 812
BamHI GGATCC 2 cut(s) 532, 825
BauI CACGAG 1 cut(s) 712
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 812, 1311
BbvI GCAGC 1 cut(s) 26
BccI CCATC 5 cut(s) 323, 345, 523, 544, 1061
BceAI ACGGC 1 cut(s) 1032
BciT130I CCWGG 3 cut(s) 311, 678, 734
BciVI GTATCC 1 cut(s) 517
BclI TGATCA 2 cut(s) 439, 592
BcoDI GTCTC 2 cut(s) 145, 1211
BfaI CTAG 3 cut(s) 411, 900, 1239
BfoI RGCGCY 1 cut(s) 114
BfuAI ACCTGC 3 cut(s) 193, 413, 1007
BfuI GTATCC 1 cut(s) 517
BglI GCCNNNNNGGC 1 cut(s) 194
BglII AGATCT 1 cut(s) 164
BisI GCNGC 2 cut(s) 15, 1269
BlnI CCTAGG 1 cut(s) 1238
BlsI GCNGC 2 cut(s) 16, 1270
Bme1390I CCNGG 3 cut(s) 311, 678, 734
Bme18I GGWCC 1 cut(s) 1091
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 332, 1091
BmiI GGNNCC 6 cut(s) 334, 534, 675, 827, 1092, 1093
BmrFI CCNGG 3 cut(s) 311, 678, 734
BmsI GCATC 5 cut(s) 13, 252, 616, 976, 1239
BmtI GCTAGC 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 891
BsaHI GRCGYC 2 cut(s) 52, 134
BsaJI CCNNGG 3 cut(s) 733, 821, 1238
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 2 cut(s) 683, 1275
Bse1I ACTGG 1 cut(s) 8
Bse21I CCTNAGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 891
BseAI TCCGGA 1 cut(s) 127
BseBI CCWGG 3 cut(s) 311, 678, 734
BseDI CCNNGG 3 cut(s) 733, 821, 1238
BseGI GGATG 6 cut(s) 4, 273, 892, 991, 1072, 1165
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 2 cut(s) 683, 1275
BseMII CTCAG 3 cut(s) 109, 410, 1139
BseNI ACTGG 1 cut(s) 8
BseRI GAGGAG 3 cut(s) 36, 39, 1180
BseSI GKGCMC 1 cut(s) 812
BseXI GCAGC 1 cut(s) 26
BseYI CCCAGC 1 cut(s) 800
BsgI GTGCAG 1 cut(s) 924
BshFI GGCC 2 cut(s) 333, 446
BsiHKAI GWGCWC 2 cut(s) 812, 1311
BsiSI CCGG 2 cut(s) 128, 896
BslFI GGGAC 4 cut(s) 76, 335, 591, 1077
BslI CCNNNNNNNGG 2 cut(s) 683, 1275
BsmAI GTCTC 2 cut(s) 145, 1211
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 4 cut(s) 76, 335, 591, 1077
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 2 cut(s) 333, 446
Bsp1286I GDGCHC 2 cut(s) 812, 1311
Bsp13I TCCGGA 1 cut(s) 127
Bsp143I GATC 8 cut(s) 164, 439, 532, 592, 640, 825, 961, 1292
BspACI CCGC 3 cut(s) 694, 989, 1269
BspANI GGCC 2 cut(s) 333, 446
BspCNI CTCAG 3 cut(s) 108, 409, 1140
BspEI TCCGGA 1 cut(s) 127
BspLI GGNNCC 6 cut(s) 334, 534, 675, 827, 1092, 1093
BspMI ACCTGC 3 cut(s) 193, 413, 1007
BspOI GCTAGC 1 cut(s) 414
BspPI GGATC 5 cut(s) 527, 540, 820, 833, 956
BspQI GCTCTTC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 8
BssECI CCNNGG 3 cut(s) 733, 821, 1238
BssMI GATC 8 cut(s) 164, 439, 532, 592, 640, 825, 961, 1292
BssNI GRCGYC 2 cut(s) 52, 134
BssSI CACGAG 1 cut(s) 712
BssT1I CCWWGG 2 cut(s) 821, 1238
Bst2BI CACGAG 1 cut(s) 712
Bst2UI CCWGG 3 cut(s) 311, 678, 734
Bst4CI ACNGT 6 cut(s) 240, 472, 479, 546, 880, 1213
Bst6I CTCTTC 2 cut(s) 135, 397
BstACI GRCGYC 2 cut(s) 52, 134
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 5 cut(s) 95, 233, 396, 648, 1148
BstF5I GGATG 6 cut(s) 4, 273, 892, 991, 1072, 1165
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 3 cut(s) 102, 113, 410
BstKTI GATC 8 cut(s) 167, 442, 535, 595, 643, 828, 964, 1295
BstMAI GTCTC 2 cut(s) 145, 1211
BstMBI GATC 8 cut(s) 164, 439, 532, 592, 640, 825, 961, 1292
BstMWI GCNNNNNNNGC 3 cut(s) 108, 194, 635
BstNI CCWGG 3 cut(s) 311, 678, 734
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 3 cut(s) 309, 676, 732
BstSLI GKGCMC 1 cut(s) 812
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 3 cut(s) 164, 532, 825
BstYI RGATCY 3 cut(s) 164, 532, 825
Bsu36I CCTNAGG 1 cut(s) 95
BsuI GTATCC 1 cut(s) 517
BsuRI GGCC 2 cut(s) 333, 446
BtgZI GCGATG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 6 cut(s) 4, 273, 892, 991, 1072, 1165
BtsIMutI CAGTG 1 cut(s) 602
BveI ACCTGC 3 cut(s) 193, 413, 1007
Cac8I GCNNGC 1 cut(s) 412
CfoI GCGC 3 cut(s) 102, 113, 410
Cfr13I GGNCC 2 cut(s) 332, 1091
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 881
CspCI CAANNNNNGTGG 4 cut(s) 285, 320, 818, 853
CviAII CATG 3 cut(s) 525, 551, 757
CviQI GTAC 1 cut(s) 881
DdeI CTNAG 5 cut(s) 95, 233, 396, 648, 1148
DpnI GATC 8 cut(s) 166, 441, 534, 594, 642, 827, 963, 1294
DpnII GATC 8 cut(s) 164, 439, 532, 592, 640, 825, 961, 1292
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 135, 397
EarI CTCTTC 2 cut(s) 135, 397
Eco130I CCWWGG 2 cut(s) 821, 1238
Eco147I AGGCCT 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 1091
Eco57I CTGAAG 2 cut(s) 263, 936
Eco81I CCTNAGG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 1091
EcoRII CCWGG 3 cut(s) 309, 676, 732
EcoT14I CCWWGG 2 cut(s) 821, 1238
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 821, 1238
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 3 cut(s) 528, 554, 760
FaqI GGGAC 4 cut(s) 76, 335, 591, 1077
FatI CATG 3 cut(s) 524, 550, 756
FbaI TGATCA 2 cut(s) 439, 592
FblI GTMKAC 1 cut(s) 401
Fnu4HI GCNGC 2 cut(s) 15, 1269
FokI GGATG 5 cut(s) 260, 879, 998, 1079, 1172
Fsp4HI GCNGC 2 cut(s) 15, 1269
FspBI CTAG 3 cut(s) 411, 900, 1239
GlaI GCGC 3 cut(s) 101, 112, 409
GluI GCNGC 2 cut(s) 15, 1269
GsaI CCCAGC 1 cut(s) 804
GsuI CTGGAG 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 2 cut(s) 333, 446
HapII CCGG 2 cut(s) 128, 896
HgaI GACGC 1 cut(s) 123
HhaI GCGC 3 cut(s) 102, 113, 410
Hin1I GRCGYC 2 cut(s) 52, 134
Hin1II CATG 3 cut(s) 528, 554, 760
Hin6I GCGC 3 cut(s) 100, 111, 408
HinP1I GCGC 3 cut(s) 100, 111, 408
HinfI GANTC 1 cut(s) 1056
HpaII CCGG 2 cut(s) 128, 896
HphI GGTGA 2 cut(s) 474, 504
Hpy166II GTNNAC 5 cut(s) 402, 475, 482, 810, 955
Hpy188I TCNGA 5 cut(s) 139, 173, 439, 522, 853
Hpy188III TCNNGA 6 cut(s) 80, 128, 341, 372, 1053, 1060
Hpy8I GTNNAC 5 cut(s) 402, 475, 482, 810, 955
Hpy99I CGWCG 3 cut(s) 47, 54, 57
HpyAV CCTTC 4 cut(s) 287, 452, 911, 1057
HpyCH4III ACNGT 6 cut(s) 240, 472, 479, 546, 880, 1213
HpyCH4IV ACGT 4 cut(s) 52, 147, 348, 589
HpyCH4V TGCA 9 cut(s) 4, 243, 424, 629, 810, 840, 905, 1180, 1252
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 194, 635
HpyF3I CTNAG 5 cut(s) 95, 233, 396, 648, 1148
HpySE526I ACGT 4 cut(s) 52, 147, 348, 589
Hsp92I GRCGYC 2 cut(s) 52, 134
Hsp92II CATG 3 cut(s) 528, 554, 760
HspAI GCGC 3 cut(s) 100, 111, 408
KflI GGGWCCC 1 cut(s) 1091
Kpn2I TCCGGA 1 cut(s) 127
Ksp22I TGATCA 2 cut(s) 439, 592
Kzo9I GATC 8 cut(s) 164, 439, 532, 592, 640, 825, 961, 1292
LguI GCTCTTC 1 cut(s) 397
LmnI GCTCC 2 cut(s) 462, 1306
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 5 cut(s) 13, 252, 616, 976, 1239
MaeI CTAG 3 cut(s) 411, 900, 1239
MaeII ACGT 4 cut(s) 52, 147, 348, 589
MaeIII GTNAC 5 cut(s) 490, 546, 857, 874, 994
MalI GATC 8 cut(s) 166, 441, 534, 594, 642, 827, 963, 1294
MboI GATC 8 cut(s) 164, 439, 532, 592, 640, 825, 961, 1292
MboII GAAGA 5 cut(s) 50, 83, 152, 384, 629
MfeI CAATTG 1 cut(s) 835
MflI RGATCY 3 cut(s) 164, 532, 825
MhlI GDGCHC 2 cut(s) 812, 1311
MluCI AATT 7 cut(s) 253, 433, 743, 772, 835, 841, 1084
MmeI TCCRAC 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 127
MseI TTAA 4 cut(s) 218, 270, 783, 1322
MspI CCGG 2 cut(s) 128, 896
MspR9I CCNGG 3 cut(s) 311, 678, 734
MunI CAATTG 1 cut(s) 835
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 3 cut(s) 311, 678, 734
MwoI GCNNNNNNNGC 3 cut(s) 108, 194, 635
NdeII GATC 8 cut(s) 164, 439, 532, 592, 640, 825, 961, 1292
NheI GCTAGC 1 cut(s) 410
NlaIII CATG 3 cut(s) 528, 554, 760
NlaIV GGNNCC 6 cut(s) 334, 534, 675, 827, 1092, 1093
NmuCI GTSAC 3 cut(s) 490, 857, 994
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 554
PaqCI CACCTGC 1 cut(s) 193
PceI AGGCCT 1 cut(s) 446
PciI ACATGT 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 1056
PkrI GCNGC 2 cut(s) 16, 1270
PpuMI RGGWCCY 1 cut(s) 1091
PscI ACATGT 1 cut(s) 550
Psp5II RGGWCCY 1 cut(s) 1091
Psp6I CCWGG 3 cut(s) 309, 676, 732
PspFI CCCAGC 1 cut(s) 800
PspGI CCWGG 3 cut(s) 309, 676, 732
PspN4I GGNNCC 6 cut(s) 334, 534, 675, 827, 1092, 1093
PspPI GGNCC 2 cut(s) 332, 1091
PspPPI RGGWCCY 1 cut(s) 1091
PsrI GAACNNNNNNTAC 2 cut(s) 1247, 1279
PsuI RGATCY 3 cut(s) 164, 532, 825
RsaI GTAC 1 cut(s) 882
RsaNI GTAC 1 cut(s) 881
SapI GCTCTTC 1 cut(s) 397
SaqAI TTAA 4 cut(s) 218, 270, 783, 1322
SatI GCNGC 2 cut(s) 15, 1269
Sau3AI GATC 8 cut(s) 164, 439, 532, 592, 640, 825, 961, 1292
Sau96I GGNCC 2 cut(s) 332, 1091
ScrFI CCNGG 3 cut(s) 311, 678, 734
SduI GDGCHC 2 cut(s) 812, 1311
SfaNI GCATC 5 cut(s) 13, 252, 616, 976, 1239
SinI GGWCC 1 cut(s) 1091
Sse9I AATT 7 cut(s) 253, 433, 743, 772, 835, 841, 1084
SseBI AGGCCT 1 cut(s) 446
SsiI CCGC 3 cut(s) 694, 989, 1269
SspMI CTAG 3 cut(s) 411, 900, 1239
StuI AGGCCT 1 cut(s) 446
StyD4I CCNGG 3 cut(s) 309, 676, 732
StyI CCWWGG 2 cut(s) 821, 1238
TaaI ACNGT 6 cut(s) 240, 472, 479, 546, 880, 1213
TaiI ACGT 4 cut(s) 55, 150, 351, 592
TaqI TCGA 2 cut(s) 69, 81
TasI AATT 7 cut(s) 253, 433, 743, 772, 835, 841, 1084
TauI GCSGC 1 cut(s) 1271
TfiI GAWTC 1 cut(s) 1056
Tru1I TTAA 4 cut(s) 218, 270, 783, 1322
Tru9I TTAA 4 cut(s) 218, 270, 783, 1322
TscAI CASTG 1 cut(s) 602
TseFI GTSAC 3 cut(s) 490, 857, 994
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 3 cut(s) 490, 857, 994
TspDTI ATGAA 8 cut(s) 246, 253, 715, 738, 756, 881, 1146, 1181
TspGWI ACGGA 2 cut(s) 546, 1200
TspRI CASTG 1 cut(s) 602
VneI GTGCAC 1 cut(s) 808
VpaK11BI GGWCC 1 cut(s) 1091
XapI RAATTY 4 cut(s) 253, 743, 772, 1084
XceI RCATGY 1 cut(s) 554
XcmI CCANNNNNNNNNTGG 1 cut(s) 522
XmaJI CCTAGG 1 cut(s) 1238
XmiI GTMKAC 1 cut(s) 401
XspI CTAG 3 cut(s) 411, 900, 1239
ZraI GACGTC 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.