RLG00000020736

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012063
Physical Location & Seq
Reverse (-)
68068522 .. 68076312
7791 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020736

Sequence Viewer

Length: 1518 bp
ATGTCAGTCCCAATGAACGAGGCTCTGATTCTCCGAAGAGAAGAAGAGGAAGACGACGACGAGGAACGACGTCGTCAAAGGAAGCTCGAAGAAGCCCTAGAAATCAAATCTCTCAGGCGCATCATCAGCGCCTACCTCAACTATCCGGAGGCTGCAGAAGAGGACGTGAGAAGATATGAAAGATCTTTTAAAATGCTTCCACCAGCCCATAAGGCTCTACTGTCTCACTACCCTTCTAAGTTTGAAAGACTAAGACGGTGTATTTCTGCCAATTCATATTTCATTTTCGATATGCTTCAGGAATTTGAACCCCCACTTGATTTGAGCCAGGACGTAGATGTTTGTGATGGCCTACATCTTGAAAACATCCCATCTGATCATGATGATTCTAGAGTAACAAATTGCTCTTCTCAATCAACCTCCGCAAGTCAAAGTATGCATGTCTCCGAATCTGATCATTCCTGTCTGGGTCTGGTGGAAGGGAGCAACAGAGTCTGCAATTCACCACTACGGGTGAGTACCAATAAGGAGGAGAAGCATGAAGGTCATGGTGAGTCCATCAACGGGAGTCACACTTTAAGCTTGGAATATACCAAACAGATACATAATTGTCATGCGAATAATGCCATTGATTCCAATGGAAATATTCAGGTGTCCTCATCAACGCGCACGTGGTTGGATCCATCAATTCAATTACATGTTCCATTAGTTGATGTTGATAAGGTTCGATGTATTATACGGAACATAGTTAGAGACTGGGCAGCAGAGGGTCAGAAAGAACGTGATCAATGCTACAGGCCTATACTTGAAGAACTTGATTCACTATTTGTTGATCGCTGTAAGGAAAGCCCTCCTGCCTGTTTAGTTCCTGGTGCTGGACTTGGGCGGCTTGCATTGGAGATCTCATGTCGAGGTTTCATTAGCCAGGGAAATGAATTTTCATACTACATGATGATATGCTCAAGTTTTATTCTCAATGCTTGTCAAACTGCTGGGGAGTGGACAATATATCCGTGGATCCACAGCAATTGTAATTCACTTTCAGACGATGACCAACTTCGCCCCGTTTCAATACCAGATATTCATCCCGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAACGATCCAAGCCAAGTAGGTGCTTGGGATGCAGTTGTGACCTGTTTCTTTATTGATACGGCACACAACATTGTTGAATACATTGAAATCATATCAAGAATCTTGAAAGAAGGAGGCGTTTGGATAAATATGGGTCCCCTACTATATCACTTTGCAGATGTATATGGACAAGGAGATGATATGTCTATTGAACTGAGTTTGGAGGATGTGAAGAGGGTTGCTTTGCATTATGGATTTCATATAGAGAAGGAAAAGACCATTGAGACAACCTACACTACAAATCCCAGATCAATGATGCAAAACCGATACTATGCTGCTTTTTGGACAATGAGAAAGAGATCAGCAAGAATAGAGCACAGCACTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

506

Amino Acids

57.48

Weight (kDa)

5.12

Isoelectric Point (pI)

64.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 231 - 496 3.2e-112 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32170 AT2G32170
fragaria_vesca FvH4_6g39770 FvH4_6g39770
malus_domestica MD09G1136900.v1.1 MD17G1127100.v1.1
prunus_persica Prupe.3G188100_v2.0.a1
pyrus_communis pycom09g05780 pycom17g11940
rosa_chinensis RchiOBHm_Chr2g0153881
rosa_laevigata RLG00000020736
rosa_multiflora Rmu_sc0003887.1_g000010
rosa_roxburghii Rroxscaffold_2G00094680
rosa_rugosa Rorug02G0443000
rosa_samantha Rh2AG506700 Rh2BG516700 Rh2CG492400 Rh2DG528800
rosa_wichuraiana Rw2G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1149
AatII GACGTC 1 cut(s) 73
AccII CGCG 1 cut(s) 667
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 4 cut(s) 423, 886, 1089, 1128
AclWI GGATC 5 cut(s) 674, 687, 1012, 1025, 1148
AcsI RAATTY 2 cut(s) 302, 935
AcuI CTGAAG 2 cut(s) 281, 1128
AcvI CACGTG 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 2 cut(s) 564, 875
AflIII ACRYGT 1 cut(s) 697
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 3 cut(s) 327, 868, 924
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 2 cut(s) 85, 582
AluI AGCT 2 cut(s) 85, 582
Alw21I GWGCWC 1 cut(s) 1506
Alw26I GTCTC 4 cut(s) 228, 448, 747, 1406
AlwI GGATC 5 cut(s) 674, 687, 1012, 1025, 1148
AlwNI CAGNNNCTG 1 cut(s) 495
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 2 cut(s) 349, 797
ApeKI GCWGC 3 cut(s) 152, 761, 1463
ApoI RAATTY 2 cut(s) 302, 935
AspLEI GCGC 3 cut(s) 120, 131, 669
AspS9I GGNCC 1 cut(s) 1283
AsuHPI GGTGA 4 cut(s) 495, 526, 563, 1142
AvaII GGWCC 1 cut(s) 1283
BamHI GGATCC 2 cut(s) 679, 1017
BbrPI CACGTG 1 cut(s) 672
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 1506
BbvI GCAGC 3 cut(s) 139, 773, 1450
BccI CCATC 4 cut(s) 341, 379, 566, 691
BceAI ACGGC 1 cut(s) 1224
BciT130I CCWGG 3 cut(s) 329, 870, 926
BclI TGATCA 3 cut(s) 376, 454, 784
BcoDI GTCTC 4 cut(s) 228, 448, 747, 1406
BfaI CTAG 3 cut(s) 98, 390, 1092
BfmI CTRYAG 2 cut(s) 153, 793
BfoI RGCGCY 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 212
BglII AGATCT 2 cut(s) 182, 900
BisI GCNGC 4 cut(s) 153, 762, 887, 1464
BlsI GCNGC 4 cut(s) 154, 763, 888, 1465
Bme1390I CCNGG 3 cut(s) 329, 870, 926
Bme18I GGWCC 1 cut(s) 1283
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 1283
BmiI GGNNCC 4 cut(s) 681, 1019, 1284, 1285
BmrFI CCNGG 3 cut(s) 329, 870, 926
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 3 cut(s) 129, 1168, 1434
BmuI ACTGGG 1 cut(s) 766
BpiI GAAGAC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 946
BsaAI YACGTR 1 cut(s) 672
BsaBI GATNNNNATC 1 cut(s) 1083
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 925, 1013
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 564, 875
Bse1I ACTGG 1 cut(s) 761
Bse8I GATNNNNATC 1 cut(s) 1083
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 3 cut(s) 329, 870, 926
BseDI CCNNGG 2 cut(s) 925, 1013
BseGI GGATG 4 cut(s) 366, 1084, 1183, 1360
BseJI GATNNNNATC 1 cut(s) 1083
BseLI CCNNNNNNNGG 2 cut(s) 564, 875
BseMII CTCAG 2 cut(s) 127, 1334
BseNI ACTGG 1 cut(s) 761
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 3 cut(s) 139, 773, 1450
BseYI CCCAGC 1 cut(s) 992
BsgI GTGCAG 1 cut(s) 1116
Bsh1236I CGCG 1 cut(s) 667
BshFI GGCC 2 cut(s) 351, 799
BsiHKAI GWGCWC 1 cut(s) 1506
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 1269
BslI CCNNNNNNNGG 2 cut(s) 564, 875
BsmAI GTCTC 4 cut(s) 228, 448, 747, 1406
BsmFI GGGAC 1 cut(s) 1269
BsnI GGCC 2 cut(s) 351, 799
Bsp1286I GDGCHC 1 cut(s) 1506
Bsp13I TCCGGA 1 cut(s) 145
BspACI CCGC 4 cut(s) 423, 886, 1089, 1128
BspANI GGCC 2 cut(s) 351, 799
BspCNI CTCAG 2 cut(s) 126, 1335
BspEI TCCGGA 1 cut(s) 145
BspFNI CGCG 1 cut(s) 667
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 4 cut(s) 681, 1019, 1284, 1285
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 5 cut(s) 674, 687, 1012, 1025, 1148
BspQI GCTCTTC 1 cut(s) 412
BsrI ACTGG 1 cut(s) 761
BssECI CCNNGG 2 cut(s) 925, 1013
BssNI GRCGYC 1 cut(s) 70
Bst2UI CCWGG 3 cut(s) 329, 870, 926
Bst4CI ACNGT 2 cut(s) 222, 258
Bst6I CTCTTC 5 cut(s) 31, 39, 153, 412, 1355
BstACI GRCGYC 1 cut(s) 70
BstBAI YACGTR 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 891
BstDEI CTNAG 4 cut(s) 113, 237, 251, 1343
BstDSI CCRYGG 1 cut(s) 1013
BstF5I GGATG 4 cut(s) 366, 1084, 1183, 1360
BstFNI CGCG 1 cut(s) 667
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 3 cut(s) 120, 131, 669
BstMAI GTCTC 4 cut(s) 228, 448, 747, 1406
BstMWI GCNNNNNNNGC 4 cut(s) 126, 212, 623, 1178
BstNI CCWGG 3 cut(s) 329, 870, 926
BstNSI RCATGY 2 cut(s) 443, 701
BstSCI CCNGG 3 cut(s) 327, 868, 924
BstSFI CTRYAG 2 cut(s) 153, 793
BstUI CGCG 1 cut(s) 667
BstV1I GCAGC 3 cut(s) 139, 773, 1450
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 4 cut(s) 182, 679, 900, 1017
BstYI RGATCY 4 cut(s) 182, 679, 900, 1017
BsuRI GGCC 2 cut(s) 351, 799
BtgI CCRYGG 1 cut(s) 1013
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 4 cut(s) 366, 1084, 1183, 1360
Cac8I GCNNGC 1 cut(s) 891
CaiI CAGNNNCTG 1 cut(s) 495
CciI TCATGA 1 cut(s) 379
CfoI GCGC 3 cut(s) 120, 131, 669
Cfr13I GGNCC 1 cut(s) 1283
Csp6I GTAC 1 cut(s) 519
CspCI CAANNNNNGTGG 4 cut(s) 303, 338, 1010, 1045
CviAII CATG 8 cut(s) 380, 440, 539, 548, 614, 698, 906, 949
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 4 cut(s) 113, 237, 251, 1343
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 5 cut(s) 31, 39, 153, 412, 1355
EarI CTCTTC 5 cut(s) 31, 39, 153, 412, 1355
Eco147I AGGCCT 1 cut(s) 799
Eco47I GGWCC 1 cut(s) 1283
Eco57I CTGAAG 2 cut(s) 281, 1128
Eco72I CACGTG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 1283
EcoRII CCWGG 3 cut(s) 327, 868, 924
EcoT22I ATGCAT 1 cut(s) 441
FaeI CATG 8 cut(s) 383, 443, 542, 551, 617, 701, 909, 952
FaqI GGGAC 1 cut(s) 1269
FatI CATG 8 cut(s) 379, 439, 538, 547, 613, 697, 905, 948
FauI CCCGC 1 cut(s) 1096
FbaI TGATCA 3 cut(s) 376, 454, 784
Fnu4HI GCNGC 4 cut(s) 153, 762, 887, 1464
FokI GGATG 4 cut(s) 353, 1071, 1190, 1367
Fsp4HI GCNGC 4 cut(s) 153, 762, 887, 1464
FspBI CTAG 3 cut(s) 98, 390, 1092
GlaI GCGC 3 cut(s) 119, 130, 668
GluI GCNGC 4 cut(s) 153, 762, 887, 1464
GsaI CCCAGC 1 cut(s) 996
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 2 cut(s) 351, 799
HapII CCGG 1 cut(s) 146
HhaI GCGC 3 cut(s) 120, 131, 669
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 8 cut(s) 383, 443, 542, 551, 617, 701, 909, 952
Hin6I GCGC 3 cut(s) 118, 129, 667
HinP1I GCGC 3 cut(s) 118, 129, 667
HindIII AAGCTT 1 cut(s) 580
HinfI GANTC 9 cut(s) 28, 386, 449, 492, 554, 568, 632, 818, 1248
HpaII CCGG 1 cut(s) 146
HphI GGTGA 4 cut(s) 495, 526, 563, 1142
Hpy166II GTNNAC 1 cut(s) 1002
Hpy188I TCNGA 7 cut(s) 27, 35, 376, 448, 454, 774, 1045
Hpy188III TCNNGA 7 cut(s) 146, 299, 359, 380, 390, 1245, 1252
Hpy8I GTNNAC 1 cut(s) 1002
Hpy99I CGWCG 4 cut(s) 59, 62, 72, 75
HpyAV CCTTC 6 cut(s) 243, 473, 536, 1103, 1253, 1390
HpyCH4III ACNGT 2 cut(s) 222, 258
HpyCH4IV ACGT 5 cut(s) 70, 165, 333, 671, 781
HpyCH4V TGCA 9 cut(s) 155, 439, 498, 893, 1097, 1181, 1304, 1375, 1447
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 212, 623, 1178
HpyF3I CTNAG 4 cut(s) 113, 237, 251, 1343
HpySE526I ACGT 5 cut(s) 70, 165, 333, 671, 781
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 8 cut(s) 383, 443, 542, 551, 617, 701, 909, 952
HspAI GCGC 3 cut(s) 118, 129, 667
KflI GGGWCCC 1 cut(s) 1283
Kpn2I TCCGGA 1 cut(s) 145
Ksp22I TGATCA 3 cut(s) 376, 454, 784
LguI GCTCTTC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 483
Lsp1109I GCAGC 3 cut(s) 139, 773, 1450
LweI GCATC 3 cut(s) 129, 1168, 1434
MaeI CTAG 3 cut(s) 98, 390, 1092
MaeII ACGT 5 cut(s) 70, 165, 333, 671, 781
MaeIII GTNAC 4 cut(s) 394, 569, 1130, 1186
MfeI CAATTG 1 cut(s) 1027
MflI RGATCY 4 cut(s) 182, 679, 900, 1017
MhlI GDGCHC 1 cut(s) 1506
MlyI GAGTC 3 cut(s) 501, 563, 577
MmeI TCCRAC 1 cut(s) 657
Mph1103I ATGCAT 1 cut(s) 441
MroI TCCGGA 1 cut(s) 145
MseI TTAA 3 cut(s) 189, 578, 1516
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 3 cut(s) 329, 870, 926
MunI CAATTG 1 cut(s) 1027
MvaI CCWGG 3 cut(s) 329, 870, 926
MvnI CGCG 1 cut(s) 667
MwoI GCNNNNNNNGC 4 cut(s) 126, 212, 623, 1178
NlaIII CATG 8 cut(s) 383, 443, 542, 551, 617, 701, 909, 952
NlaIV GGNNCC 4 cut(s) 681, 1019, 1284, 1285
NmuCI GTSAC 3 cut(s) 569, 1130, 1186
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 2 cut(s) 443, 701
PagI TCATGA 1 cut(s) 379
PceI AGGCCT 1 cut(s) 799
PciI ACATGT 1 cut(s) 697
PciSI GCTCTTC 1 cut(s) 412
PfeI GAWTC 6 cut(s) 28, 386, 449, 632, 818, 1248
PflFI GACNNNGTC 1 cut(s) 72
PkrI GCNGC 4 cut(s) 154, 763, 888, 1465
PleI GAGTC 3 cut(s) 500, 562, 576
PmaCI CACGTG 1 cut(s) 672
PmlI CACGTG 1 cut(s) 672
PpsI GAGTC 3 cut(s) 500, 562, 576
Ppu21I YACGTR 1 cut(s) 672
PpuMI RGGWCCY 1 cut(s) 1283
PscI ACATGT 1 cut(s) 697
PsiI TTATAA 1 cut(s) 1149
Psp5II RGGWCCY 1 cut(s) 1283
Psp6I CCWGG 3 cut(s) 327, 868, 924
PspCI CACGTG 1 cut(s) 672
PspFI CCCAGC 1 cut(s) 992
PspGI CCWGG 3 cut(s) 327, 868, 924
PspN4I GGNNCC 4 cut(s) 681, 1019, 1284, 1285
PspPI GGNCC 1 cut(s) 1283
PspPPI RGGWCCY 1 cut(s) 1283
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 495
PsuI RGATCY 4 cut(s) 182, 679, 900, 1017
PsyI GACNNNGTC 1 cut(s) 72
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
SapI GCTCTTC 1 cut(s) 412
SaqAI TTAA 3 cut(s) 189, 578, 1516
SatI GCNGC 4 cut(s) 153, 762, 887, 1464
Sau96I GGNCC 1 cut(s) 1283
SchI GAGTC 3 cut(s) 501, 563, 577
ScrFI CCNGG 3 cut(s) 329, 870, 926
SduI GDGCHC 1 cut(s) 1506
SfaNI GCATC 3 cut(s) 129, 1168, 1434
SfcI CTRYAG 2 cut(s) 153, 793
SinI GGWCC 1 cut(s) 1283
SmlI CTYRAG 1 cut(s) 961
SmoI CTYRAG 1 cut(s) 961
SseBI AGGCCT 1 cut(s) 799
SsiI CCGC 4 cut(s) 423, 886, 1089, 1128
SspI AATATT 1 cut(s) 646
SspMI CTAG 3 cut(s) 98, 390, 1092
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 3 cut(s) 327, 868, 924
TaaI ACNGT 2 cut(s) 222, 258
TaiI ACGT 5 cut(s) 73, 168, 336, 674, 784
TaqI TCGA 4 cut(s) 87, 288, 727, 910
TauI GCSGC 1 cut(s) 889
TfiI GAWTC 6 cut(s) 28, 386, 449, 632, 818, 1248
Tru1I TTAA 3 cut(s) 189, 578, 1516
Tru9I TTAA 3 cut(s) 189, 578, 1516
TseFI GTSAC 3 cut(s) 569, 1130, 1186
TseI GCWGC 3 cut(s) 152, 761, 1463
Tsp45I GTSAC 3 cut(s) 569, 1130, 1186
TspGWI ACGGA 2 cut(s) 754, 1002
Tth111I GACNNNGTC 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 1283
XapI RAATTY 2 cut(s) 302, 935
XbaI TCTAGA 1 cut(s) 389
XceI RCATGY 2 cut(s) 443, 701
XspI CTAG 3 cut(s) 98, 390, 1092
ZraI GACGTC 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.