AT2G32460
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014534
Physical Location & Seq
Reverse (-)
13782107 .. 13784483
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32460.1

Sequence Viewer

Length: 1473 bp
ATGGATGGTGGTGGAGAGACGACGGCGACGGCTACGATGGAGGGGAGAGGGTTGAAGAAAGGGCCGTGGACAACGACGGAGGATGCGATCTTGACGGAGTACGTGAGAAAACACGGTGAAGGTAATTGGAACGCCGTGCAAAAGAACTCAGGTTTGCTCCGGTGTGGCAAAAGTTGCCGTCTACGGTGGGCGAATCATCTCCGGCCAAATCTAAAGAAAGGATCTTTTACTCCTGATGAAGAAAAGATCATCATCGACCTTCACGCTAAGCTTGGAAACAAATGGGCTCGTATGGCTTCTCAGTTACCTGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACGAGGATGAAGAGAAGACAAAGAGCTGGTTTGCCTTTATACCCTCATGAGATTCAACATCAAGGGATTGATATTGATGATGAGTTTGAGTTTGATTTAACTTCCTTTCAGTTCCAAAACCAAGATCTTGATCATAACCACCAAAATATGATTCAGTACACTAATTCTTCTAATACTTCATCATCCTCGTCTTCATTCTCTTCTTCATCTTCTCAACCATCAAAAAGGCTGCGTCCTGATCCTTTAGTCTCTACTAATCCCGGCCTAAACCCGATCCCCGATTCTTCGATGGATTTTCAAATGTTCTCTCTTTACAACAATAGCCTTGAGAATGACAATAACCAGTTTGGTTTCTCTGTTCCTTTGTCCTCATCATCCTCGTCTAACGAGGTGTGTAATCCCAACCACATCCTTGAGTACATCTCCGAGAATTCGGACACAAGAAATACCAATAAGAAAGACATTGATGCTATGAGTTATAGTTCATTGCTTATGGGAGATCTTGAGATAAGATCGAGTTCTTTCCCTTTAGGACTAGACAATAGCGTCCTAGAGCTTCCTTCAAACCAAAGACCGACCCATTCGTTCAGTTCTAGTCCTATTATTGACAATGGTGTCCATCTTGAGCCACCTTCTGGCAATAGTGGACTACTTGATGCCCTCTTGGAGGAGTCTCAAGCCTTGTCTCGAGGCGGACTCTTCAAGGACGTTAGGGTTTCCTCCAGTGACCTATGTGAGGTTCAAGATAAAAGGGTGAAGATGGACTTTGAGAATCTTTTAATAGATCATCTAAACTCTTCTAATCATTCATCATTGGGAGCAAACCCTAATATTCACAACAAGTACAATGAGCCAACAATGGTAAAAGTAACGGTGGATGATGATGATGAATTATTGACGAGCCTTCTCAACAACTTCCCTTCAACCACAACACCTTTGCCTGATTGGTATCGGGTGACAGAAATGCAAAACGAGGCCTCATATCTTGCCCCACCAAGTGGAATTCTTATGGGAAACCATCAAGGTAACGGCAGGGTGGAACCACCCACGGTGCCGCCTTCGTCCAGTGTAGATCCTATGGCCTCGTTGGGGTCATGCTATTGGAGCAACATGCCTAGCATCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010769 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042221 GO:0042995 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045595 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048638 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051510 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0060284 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0080092 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1900618 GO:1901363 GO:1901371 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905421 GO:1905957 GO:1905959 GO:1990019 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

490

Amino Acids

54.44

Weight (kDa)

5.22

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 20 - 67 6.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 23 - 81 1e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 73 - 116 3.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 76 - 120 5.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32460 AT2G32460
fragaria_vesca FvH4_6g43080
malus_domestica MD09G1109900.v1.1
prunus_persica Prupe.3G216600_v2.0.a1
pyrus_communis pycom09g03240
rosa_chinensis RchiOBHm_Chr2g0159111
rosa_laevigata RLG00000021138
rosa_multiflora Rmu_sc0013510.1_g000001
rosa_roxburghii Rroxscaffold_2G00090770
rosa_rugosa Rorug02G0474000.1 Rorug02G0474100
rosa_samantha Rh2AG540900 Rh2BG553800 Rh2CG523900 Rh2DG563400
rosa_wichuraiana Rw2G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 890, 959
AccB1I GGYRCC 1 cut(s) 1396
AccB7I CCANNNNNTGG 2 cut(s) 980, 1343
AccI GTMKAC 1 cut(s) 181
AciI CCGC 2 cut(s) 1038, 1400
AclWI GGATC 4 cut(s) 229, 578, 613, 1412
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 2 cut(s) 775, 1347
AdeI CACNNNGTG 1 cut(s) 1343
AfaI GTAC 4 cut(s) 101, 503, 764, 1190
AfiI CCNNNNNNNGG 5 cut(s) 980, 1012, 1081, 1343, 1434
AgsI TTSAA 7 cut(s) 55, 401, 644, 909, 1048, 1088, 1269
AjnI CCWGG 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AluBI AGCT 3 cut(s) 271, 371, 901
AluI AGCT 3 cut(s) 271, 371, 901
Alw26I GTCTC 4 cut(s) 11, 598, 1023, 1035
AlwI GGATC 4 cut(s) 229, 578, 613, 1412
Ama87I CYCGRG 1 cut(s) 1032
AoxI GGCC 5 cut(s) 62, 203, 607, 1320, 1425
ApeKI GCWGC 1 cut(s) 574
ApoI RAATTY 2 cut(s) 775, 1347
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 606
AsuHPI GGTGA 3 cut(s) 128, 1111, 1312
AvaI CYCGRG 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 1396
BanII GRGCYC 1 cut(s) 289
BauI CACGAG 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 367, 528
BbvI GCAGC 1 cut(s) 561
BccI CCATC 6 cut(s) 31, 571, 628, 972, 1099, 1371
BceAI ACGGC 6 cut(s) 39, 45, 49, 119, 162, 1390
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 1 cut(s) 606
BcoDI GTCTC 4 cut(s) 11, 598, 1023, 1035
BfaI CTAG 4 cut(s) 881, 896, 939, 1461
BglII AGATCT 2 cut(s) 469, 844
BisI GCNGC 2 cut(s) 575, 1400
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 2 cut(s) 576, 1401
Bme1390I CCNGG 2 cut(s) 309, 606
BmeT110I CYCGRG 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 2 cut(s) 1386, 1398
BmrFI CCNGG 2 cut(s) 309, 606
BmsI GCATC 3 cut(s) 73, 802, 991
BpiI GAAGAC 2 cut(s) 367, 528
BplI GAGNNNNNCTC 4 cut(s) 752, 784, 1026, 1058
BpmI CTGGAG 1 cut(s) 1051
Bpu1102I GCTNAGC 1 cut(s) 267
BpuEI CTTGAG 5 cut(s) 692, 779, 869, 989, 1005
BpuMI CCSGG 1 cut(s) 606
BsaAI YACGTR 1 cut(s) 103
BsaBI GATNNNNATC 3 cut(s) 251, 474, 1293
BsaJI CCNNGG 2 cut(s) 65, 1392
BsaWI WCCGGW 1 cut(s) 159
Bsc4I CCNNNNNNNGG 5 cut(s) 980, 1012, 1081, 1343, 1434
Bse1I ACTGG 3 cut(s) 688, 1068, 1410
Bse3DI GCAATG 1 cut(s) 830
Bse8I GATNNNNATC 3 cut(s) 251, 474, 1293
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 65, 1392
BseGI GGATG 7 cut(s) 10, 88, 357, 527, 719, 753, 1228
BseJI GATNNNNATC 3 cut(s) 251, 474, 1293
BseLI CCNNNNNNNGG 5 cut(s) 980, 1012, 1081, 1343, 1434
BseMI GCAATG 1 cut(s) 830
BseMII CTCAG 2 cut(s) 162, 314
BseNI ACTGG 3 cut(s) 688, 1068, 1410
BseRI GAGGAG 1 cut(s) 1028
BseXI GCAGC 1 cut(s) 561
BshFI GGCC 5 cut(s) 64, 205, 609, 1322, 1427
BshNI GGYRCC 1 cut(s) 1396
BsiHKCI CYCGRG 1 cut(s) 1032
BsiSI CCGG 3 cut(s) 160, 202, 606
BslI CCNNNNNNNGG 5 cut(s) 980, 1012, 1081, 1343, 1434
BsmAI GTCTC 4 cut(s) 11, 598, 1023, 1035
BsmBI CGTCTC 1 cut(s) 11
BsnI GGCC 5 cut(s) 64, 205, 609, 1322, 1427
BsoBI CYCGRG 1 cut(s) 1032
Bsp1286I GDGCHC 1 cut(s) 289
Bsp1720I GCTNAGC 1 cut(s) 267
BspACI CCGC 2 cut(s) 1038, 1400
BspANI GGCC 5 cut(s) 64, 205, 609, 1322, 1427
BspCNI CTCAG 2 cut(s) 161, 313
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 1386, 1398
BspPI GGATC 4 cut(s) 229, 578, 613, 1412
BspT107I GGYRCC 1 cut(s) 1396
BsrDI GCAATG 1 cut(s) 830
BsrI ACTGG 3 cut(s) 688, 1068, 1410
BssECI CCNNGG 2 cut(s) 65, 1392
BssSI CACGAG 1 cut(s) 346
Bst2BI CACGAG 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 4 cut(s) 116, 186, 1219, 1396
Bst6I CTCTTC 4 cut(s) 350, 550, 1049, 1147
BstAPI GCANNNNNTGC 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 103
BstDEI CTNAG 3 cut(s) 148, 267, 300
BstDSI CCRYGG 2 cut(s) 65, 1392
BstENI CCTNNNNNAGG 2 cut(s) 1010, 1079
BstF5I GGATG 7 cut(s) 10, 88, 357, 527, 719, 753, 1228
BstMAI GTCTC 4 cut(s) 11, 598, 1023, 1035
BstMWI GCNNNNNNNGC 3 cut(s) 174, 293, 1449
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 1459
BstSCI CCNGG 2 cut(s) 307, 604
BstV1I GCAGC 1 cut(s) 561
BstV2I GAAGAC 2 cut(s) 367, 528
BstX2I RGATCY 4 cut(s) 221, 469, 844, 1417
BstYI RGATCY 4 cut(s) 221, 469, 844, 1417
BsuRI GGCC 5 cut(s) 64, 205, 609, 1322, 1427
BtgI CCRYGG 2 cut(s) 65, 1392
BtsCI GGATG 7 cut(s) 10, 88, 357, 527, 719, 753, 1228
BtsIMutI CAGTG 2 cut(s) 1075, 1417
CciI TCATGA 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 62
CseI GACGC 2 cut(s) 566, 880
Csp6I GTAC 4 cut(s) 100, 502, 763, 1189
CviAII CATG 3 cut(s) 392, 1440, 1456
CviQI GTAC 4 cut(s) 100, 502, 763, 1189
DdeI CTNAG 3 cut(s) 148, 267, 300
DraIII CACNNNGTG 1 cut(s) 1343
DrdI GACNNNNNNGTC 2 cut(s) 890, 959
DseDI GACNNNNNNGTC 2 cut(s) 890, 959
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 4 cut(s) 350, 550, 1049, 1147
EarI CTCTTC 4 cut(s) 350, 550, 1049, 1147
EciI GGCGGA 1 cut(s) 1053
Eco147I AGGCCT 1 cut(s) 1322
Eco24I GRGCYC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 1032
EcoNI CCTNNNNNAGG 2 cut(s) 1010, 1079
EcoRI GAATTC 2 cut(s) 775, 1347
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 3 cut(s) 395, 1443, 1459
FalI AAGNNNNNCTT 2 cut(s) 1094, 1126
FatI CATG 3 cut(s) 391, 1439, 1455
FbaI TGATCA 1 cut(s) 475
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 575, 1400
FokI GGATG 7 cut(s) 17, 95, 364, 514, 706, 740, 1235
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 575, 1400
FspBI CTAG 4 cut(s) 881, 896, 939, 1461
GluI GCNGC 2 cut(s) 575, 1400
GsuI CTGGAG 1 cut(s) 1051
HaeIII GGCC 5 cut(s) 64, 205, 609, 1322, 1427
HapII CCGG 3 cut(s) 160, 202, 606
HgaI GACGC 2 cut(s) 566, 880
Hin1II CATG 3 cut(s) 395, 1443, 1459
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 7 cut(s) 193, 397, 496, 626, 1016, 1041, 1117
HpaII CCGG 3 cut(s) 160, 202, 606
HphI GGTGA 3 cut(s) 128, 1111, 1312
Hpy166II GTNNAC 4 cut(s) 69, 182, 504, 992
Hpy188I TCNGA 2 cut(s) 772, 781
Hpy8I GTNNAC 4 cut(s) 69, 182, 504, 992
Hpy99I CGWCG 3 cut(s) 25, 31, 79
HpyAV CCTTC 7 cut(s) 113, 269, 915, 987, 1259, 1275, 1413
HpyCH4III ACNGT 4 cut(s) 116, 186, 1219, 1396
HpyCH4IV ACGT 2 cut(s) 102, 1053
HpyCH4V TGCA 2 cut(s) 139, 1312
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 293, 1449
HpyF3I CTNAG 3 cut(s) 148, 267, 300
HpySE526I ACGT 2 cut(s) 102, 1053
Hsp92II CATG 3 cut(s) 395, 1443, 1459
Ksp22I TGATCA 1 cut(s) 475
LmnI GCTCC 3 cut(s) 162, 1163, 1449
Lsp1109I GCAGC 1 cut(s) 561
LweI GCATC 3 cut(s) 73, 802, 991
MaeI CTAG 4 cut(s) 881, 896, 939, 1461
MaeII ACGT 2 cut(s) 102, 1053
MaeIII GTNAC 5 cut(s) 303, 1070, 1213, 1300, 1370
MflI RGATCY 4 cut(s) 221, 469, 844, 1417
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 5 cut(s) 124, 508, 775, 1235, 1347
MlyI GAGTC 2 cut(s) 1025, 1035
MseI TTAA 2 cut(s) 443, 1124
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 3 cut(s) 160, 202, 606
MspR9I CCNGG 2 cut(s) 309, 606
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 3 cut(s) 174, 293, 1449
NciI CCSGG 1 cut(s) 606
NlaIII CATG 3 cut(s) 395, 1443, 1459
NlaIV GGNNCC 2 cut(s) 1386, 1398
NmuCI GTSAC 2 cut(s) 1070, 1300
NspI RCATGY 1 cut(s) 1459
PaeR7I CTCGAG 1 cut(s) 1032
PagI TCATGA 1 cut(s) 391
PceI AGGCCT 1 cut(s) 1322
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 5 cut(s) 193, 397, 496, 626, 1117
PflMI CCANNNNNTGG 2 cut(s) 980, 1343
PkrI GCNGC 2 cut(s) 576, 1401
PleI GAGTC 2 cut(s) 1024, 1035
PpsI GAGTC 2 cut(s) 1024, 1035
Ppu21I YACGTR 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 1386, 1398
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 4 cut(s) 221, 469, 844, 1417
RsaI GTAC 4 cut(s) 101, 503, 764, 1190
RsaNI GTAC 4 cut(s) 100, 502, 763, 1189
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 2 cut(s) 443, 1124
SatI GCNGC 2 cut(s) 575, 1400
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 2 cut(s) 1025, 1035
ScrFI CCNGG 2 cut(s) 309, 606
SduI GDGCHC 1 cut(s) 289
SfaNI GCATC 3 cut(s) 73, 802, 991
Sfr274I CTCGAG 1 cut(s) 1032
SlaI CTCGAG 1 cut(s) 1032
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 6 cut(s) 671, 758, 848, 968, 1020, 1032
SmoI CTYRAG 6 cut(s) 671, 758, 848, 968, 1020, 1032
Sse9I AATT 5 cut(s) 124, 508, 775, 1235, 1347
SseBI AGGCCT 1 cut(s) 1322
SsiI CCGC 2 cut(s) 1038, 1400
SspI AATATT 1 cut(s) 1177
SspMI CTAG 4 cut(s) 881, 896, 939, 1461
StuI AGGCCT 1 cut(s) 1322
StyD4I CCNGG 2 cut(s) 307, 604
TaaI ACNGT 4 cut(s) 116, 186, 1219, 1396
TaiI ACGT 2 cut(s) 105, 1056
TaqI TCGA 4 cut(s) 255, 632, 860, 1033
TaqII GACCGA 1 cut(s) 934
TasI AATT 5 cut(s) 124, 508, 775, 1235, 1347
TatI WGTACW 3 cut(s) 501, 762, 1188
TauI GCSGC 1 cut(s) 1402
TfiI GAWTC 5 cut(s) 193, 397, 496, 626, 1117
Tru1I TTAA 2 cut(s) 443, 1124
Tru9I TTAA 2 cut(s) 443, 1124
TscAI CASTG 2 cut(s) 1075, 1417
TseFI GTSAC 2 cut(s) 1070, 1300
TseI GCWGC 1 cut(s) 574
Tsp45I GTSAC 2 cut(s) 1070, 1300
TspDTI ATGAA 8 cut(s) 252, 368, 513, 528, 540, 819, 1143, 1248
TspGWI ACGGA 2 cut(s) 92, 110
TspRI CASTG 2 cut(s) 1075, 1417
Van91I CCANNNNNTGG 2 cut(s) 980, 1343
XagI CCTNNNNNAGG 2 cut(s) 1010, 1079
XapI RAATTY 2 cut(s) 775, 1347
XceI RCATGY 1 cut(s) 1459
XhoI CTCGAG 1 cut(s) 1032
XmiI GTMKAC 1 cut(s) 181
XspI CTAG 4 cut(s) 881, 896, 939, 1461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.