Rorug02G0474100
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014534
Physical Location & Seq
Forward (+)
60537162 .. 60541295
4134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0474100.1

Sequence Viewer

Length: 4113 bp
ATGGATATACTTAGTTGGAATTGCAGGGGGATCTGCAATGACACAACAAGGAGGGCGTTGAAGGATTTAATCGTTCAGAATCGTCCTCAGATCGTCTTTCTCTGTGAGACAAAAATCAGTAGCGTTTCTGGCTTCCGTGATCTACATCATGCGCTAGGATTTCCACACTCAAAGGAGGTGTTGAGTGTTGGGCAATCAGGAGGGTTAGGGATGTTCTGGAATGATGAAGTTAATGTGCAAGTTCGTACTTTTTCTGCCCACCATATTGATCTGGAGATTGGTGGTGGTCCGGGAGATCCGAGATGGAGGCTAACTGGGTTTTATGGGTATCCTACAACGGCGGAGAGAGATAAGTCTTGGCAATTGCTCAGAGACCTTCGTGATCTGGATTCCTTGCCTTGGGTTGTTATTGGGGATTTCAATGAAATTCTTAATAATAGCGAGAAGTTGGATGGACCTCCAAGAGCAGAGCGACAAATGCGTGGGTTTCGTGAAGCCCTAGGATATGGGGACCTTCTTGATCTAGGGTTTCAAGGAGTGATGTCTACGTGGTGGAATTCTGAGACAAGACTCAGACTGGATCGTGCGGTCTGCACCCCTTGTTGGTACGATATCTTTGGTTGTGCTCGAGTCCGACATTTACCGCCGAGTGATTCAGATCACGTCCCAATATTGCTGCAGGCTAGTGCAGTTCAGTTGCCCCAGCAGTCACGTCGGCATCGCTTCAAATTTGAAGTGTTTTGGCTTCAGCATGGTGAGTGTGATGGGGTAGTGAAGAGTGCATGGGCTACTGACGTTGTTGGTAGCCCTATGTATTCTGTTGTTAAGAAAATTGAGCACACTCGCCTGCGACTCAATGTCTGGCAGAGGCAGACTTTTAAGGCTCGTCAGCAGGAGATGCTAGGCATAAGGGCACGTCTAGAGGAGTTGTTAGGGGTACCGTTTACGATGGGTGCTCAAAATGAGAAGAAAGATTTGATGGGTCGCCTACAGTCACTTCTGTCACAGGAAGAGTTGTTTTGGCGACAAAGATCAAAGGTTTCTTGGTTAAAGGAGGGGGATAGGAATACTAGCTATTTCCACCGAAAAGCTGCAAATCGAAGGAGGAAGAATTCGATTCCGGGTTTGTATGATGAACAAGGTCAATGGTGTGATGACGATGATGGAATGGAAAAGGTTGTCACTGACTACTTCACAAAAATGTTTACTGCATCAAACATTGATCTGGACGCTGTAGCGACTACTCTTGCAGCTATACAGCCTTGTGTCACGCATGGTATGAATGAGAAGCTTTGTGCGTCGTATTCTCAAGAGGAAGTGAAGGATGCATTATTCCAGATGTATCCTACTAAATCTCCGGGACCGGATGGCATGCCTCCCATTTTTTTCCAACACTATTGGGAAACTATTGGAGCAGCTGTTACAGAGGCAGTTCAGGATTTTCTGCATTCAGGTCAACTACTTCCTCAAATCAACTTTACTCATATTTGCTTGATTCCCAAAGTAAATAATCCGGAACACATGTCGGATTTGCGGCCAATTGCTCTTTGTAATGTGATTTACAAAATTTGTTCAAAGGTAATTGCTAACAGGTTGAAGCAGGTTCTACCCTCTCTGATTTCCCCTTATCAGAGTGCTTTTGTTCCTGGGAGGTTGATCACTGATAACATTCTGGTAGCTAATGAGATTGCCCACTTTGTTCATAATAAGAGAGAGGGAGGGGAAGGTTTTATGGCATTGAAGCTCGATCTCAGTAAAGCATATGATCGAATCGAATGGACTTTTCTAAGAAAGGTTCTGGACCGGTTTGGTTTTAATCATGGTTGGATTGAGATGGTGATGCAGTGCATTAGTTCAGTGAGATACTCTTTTTTGGTGCGTGGAAAACCCCGAGGTTTAGTTATTCCAAGTAGAGGATTGAGACAAGGGGATCCACTATCCCCTTATCTATTTCTGCTTGGCGTTGAAGGTTTTTCTGCTTTGCTAAGACAGAAACAGGAGATGGGTTTTCTCCCAGGTATTGAGGTATGTCATGATGCTCCAGCCGTAAATCATCTTTTATTCGCGGATGATAGTATGTTATATGCTCATGCTTCATTGGAGGACTGTTACCAGATTCAGGATGTTATTGAAACTTATGGGAGAGCTTCTGGACAACTTGTTAATTTCGATAAGAGTTCAGTGGTTTTCAGTAAGAATGTGTCAGACTTTATGCAAGATGAAGTGTCGAGTCTACTAGGTGTTGAGGTGGTTGAATCTCATGAACGTTATCTAGGGCTGCCTACTTATGTGGGGAGGAAGAAAACAGCTACCTTTCAATTTATTAAGGACAATCTAGCTAAGAAGCTTTCTTGTTGGCAAGGGAAGATGTTGAGCGGAGCAGGAAAAGATATATTGATCAGAGTAGTGGCGCAAGCTTTACCTACCTATGCAATGAGTGTGTTTCAGTTAACAAAGAACTTTTGTCTGGATCTTGAGCAGATGTGTGCCCGATTTTGGTGGGGAAGCACTAATGACAAGAGGAAAATACATTGGAAAACATGGAATGCCTTGTGTAATCCGAAGGAAGAGGGGGGTCTTGGCTTTCGTAGCCTTTCAAACTTCAATTCAGCAATGCTTGCTAAGCAAGCGTGGAGGGTGATTTCTAACCCCAACTCTCTTATTGCTCGTCTTTATAAAGCAAAGTACTACCCTACAGAGTCCTTTTGGACAGCAGAATTACATACCTCTCCTTCTTATTCATGGAGAAGTATTTTCTCTACCAGGGAACTTTTACAAGAAAGTGTTTATTGGCAGATTGGTAATGGGACGCAGGTAAACATTTGGTCGGACTCGTGGGTGCCTAGCTTACCAAGTGGGAAACCCAATGTGAATGCAACGGCCTTGGAGGAGGTGGCCGGGGTACAGGATCTGATCTCCAATACTGGAAGTTGGAATGTTGAGCTAATTAATAGGCTTTTTTCTGTGGAGGAAGCAGAAGCGATATTGAGCATACCACTAAGCTCAACGAATGTAGAAGATAGATTGGTATGGAAGTTGGAGAGGGACGGTAAGTATTCGGTAAAAACTGCTTATCGATTCTCTTTTTCTCATTCTAATTCTAGAAGTCCATTTGAACTCTTTGTTGGTGTCGATTTTTGGAAGAAATTATGGAAGGTTGTGATGCCTAGTTCAGCGAAGATTCATATTTGGAGGGTTTGTCATAACATTCTCCCTTCAAATGACAGGTTACTGTCTAGAAGAGTGCCTTTGGAAACACAGGTTTGTGTTCTTTGTGAAAGTGCAACTGAGACATCTTTGCACATTTGTCGTGATTGTCCTTTTACAAAACAGGTTTTACAGGGTAATGGTGTGTTGGTTCACACTTGTTTCAGTCCACAAGCTTTGAATTGTGACTTGCTAGGGTGGTTGAGCATCTGTGTTCAGGCTTTATCGTTAAAGGATTTGGGGGATCTTCTGTTTCTTTTGTGGAGTGTGTGGAAGGAAAGAAATAGTAGAGTATGGGATGATAAGAAAGGTCAACCTTGGGATGTTCTGCTTAAGGCTACTACAAGATTACAGGATTTTCGTGTTCATAATACTAGGCAGACATTGAGGGAGACTAGCAGCTCAAGATTGGCTCGGTGGCGGGCTCCATCAGTGGAGATCTATAAAATTAATGTGGATGGCAGTTTTGATCATGTTTCACGAAAAGGTAGCGCTGGTTTTGTGGTGCGTGATTGCAATGGCACCATGATAGCAGGTGGAGGGAAACCGCTGTGTGGTTTGCTTTCAGCTGAACATGCCGAAGCATTGGCATGTAAACTAGCTTTTGATTTTGTCTTGGATCAGGTTTTGGTACCGGCCATAGTGGAGACTGACTCTCAGCTTGTGCAGCAGCAATTGTGCAGGTCTGAGGGGAGTAATTTCTCACAGCTTGGGCGGCTTTATGATGATTTGGGCTCCACCTTGAGAGCTCACTCTAATTTGAAGGTAGTTTATACTAGAAGAGGTGCTAATAAAGCAGCGCATCTGATGGCTGCATCTGCTAGTTCGTTATCTCGAGAATGTTTTTATTTTTCTCCTCCTCCCTTTCTGCTTGCTGTTATTGCAGCTGAGCAAGACCATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010769 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042221 GO:0042995 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045595 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048638 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051510 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0060284 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0080092 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1900618 GO:1901363 GO:1901371 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905421 GO:1905957 GO:1905959 GO:1990019 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

1370

Amino Acids

155.33

Weight (kDa)

8.46

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 203 1.7e-17 Endonuclease/Exonuclease/phosphatase family
RVT_1 PF00078 499 - 739 2.4e-30 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 1019 - 1112 6.4e-14 zinc-binding in reverse transcriptase
RVT_3 PF13456 1220 - 1343 3.1e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32460 AT2G32460
fragaria_vesca FvH4_6g43080
malus_domestica MD09G1109900.v1.1
prunus_persica Prupe.3G216600_v2.0.a1
pyrus_communis pycom09g03240
rosa_chinensis RchiOBHm_Chr2g0159111
rosa_laevigata RLG00000021138
rosa_multiflora Rmu_sc0013510.1_g000001
rosa_roxburghii Rroxscaffold_2G00090770
rosa_rugosa Rorug02G0474000.1 Rorug02G0474100
rosa_samantha Rh2AG540900 Rh2BG553800 Rh2CG523900 Rh2DG563400
rosa_wichuraiana Rw2G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2676
AarI CACCTGC 1 cut(s) 3731
Acc36I ACCTGC 4 cut(s) 1591, 2803, 3731, 3879
Acc65I GGTACC 2 cut(s) 937, 3838
AccB1I GGYRCC 4 cut(s) 937, 2839, 3728, 3838
AccBSI CCGCTC 1 cut(s) 2376
AccI GTMKAC 2 cut(s) 545, 2233
AccII CGCG 1 cut(s) 2066
AccIII TCCGGA 1 cut(s) 1513
AciI CCGC 9 cut(s) 341, 587, 644, 1534, 2066, 2376, 3628, 3755, 3922
AclI AACGTT 1 cut(s) 2266
AclWI GGATC 9 cut(s) 38, 290, 588, 1925, 1938, 2478, 2916, 3459, 3834
AcoI YGGCCR 3 cut(s) 1535, 2895, 3843
AcsI RAATTY 5 cut(s) 426, 556, 728, 1111, 1566
AcuI CTGAAG 1 cut(s) 731
AfaI GTAC 6 cut(s) 247, 608, 939, 2687, 2904, 3840
AfeI AGCGCT 1 cut(s) 3700
AfiI CCNNNNNNNGG 6 cut(s) 399, 603, 1913, 2119, 2496, 3761
AflII CTTAAG 1 cut(s) 3539
AflIII ACRYGT 1 cut(s) 1521
AgeI ACCGGT 1 cut(s) 1803
AhdI GACNNNNNGTC 1 cut(s) 857
AjiI CACGTC 3 cut(s) 664, 713, 917
AjnI CCWGG 3 cut(s) 1645, 2014, 2762
AjuI GAANNNNNNNTTGG 2 cut(s) 3108, 3140
Alw21I GWGCWC 4 cut(s) 628, 840, 958, 3958
Alw26I GTCTC 7 cut(s) 101, 366, 557, 1915, 3284, 3593, 3848
AlwI GGATC 9 cut(s) 38, 290, 588, 1925, 1938, 2478, 2916, 3459, 3834
AlwNI CAGNNNCTG 1 cut(s) 2911
Ama87I CYCGRG 3 cut(s) 627, 1890, 4041
Aor13HI TCCGGA 1 cut(s) 1513
Aor51HI AGCGCT 1 cut(s) 3700
AoxI GGCC 4 cut(s) 1535, 2880, 2895, 3843
ApoI RAATTY 5 cut(s) 426, 556, 728, 1111, 1566
AseI ATTAAT 2 cut(s) 2949, 3657
AsiGI ACCGGT 1 cut(s) 1803
Asp718I GGTACC 2 cut(s) 937, 3838
AspA2I CCTAGG 1 cut(s) 499
AspLEI GCGC 4 cut(s) 154, 2413, 3701, 4009
AspS9I GGNCC 5 cut(s) 287, 455, 511, 1361, 1801
AsuC2I CCSGG 4 cut(s) 291, 1122, 1359, 2899
AsuHPI GGTGA 3 cut(s) 767, 1849, 2650
AvaI CYCGRG 3 cut(s) 627, 1890, 4041
AvaII GGWCC 5 cut(s) 287, 455, 511, 1361, 1801
AvrII CCTAGG 1 cut(s) 499
BaeGI GKGCMC 2 cut(s) 916, 2491
BamHI GGATCC 1 cut(s) 1930
BanI GGYRCC 4 cut(s) 937, 2839, 3728, 3838
BanII GRGCYC 3 cut(s) 3634, 3944, 3958
BauI CACGAG 1 cut(s) 2833
Bbv12I GWGCWC 4 cut(s) 628, 840, 958, 3958
BceAI ACGGC 3 cut(s) 354, 2030, 2895
BcgI CGANNNNNNTGC 4 cut(s) 695, 729, 3290, 3324
BciT130I CCWGG 3 cut(s) 1647, 2016, 2764
BciVI GTATCC 2 cut(s) 339, 1353
BclI TGATCA 3 cut(s) 1656, 2397, 3676
BcnI CCSGG 4 cut(s) 291, 1122, 1359, 2899
BcoDI GTCTC 7 cut(s) 101, 366, 557, 1915, 3284, 3593, 3848
BfmI CTRYAG 4 cut(s) 677, 989, 1233, 2694
BfoI RGCGCY 1 cut(s) 3702
BfrI CTTAAG 1 cut(s) 3539
BfuAI ACCTGC 4 cut(s) 1591, 2803, 3731, 3879
BfuI GTATCC 2 cut(s) 339, 1353
BglII AGATCT 1 cut(s) 3645
BlnI CCTAGG 1 cut(s) 499
BlpI GCTNAGC 2 cut(s) 2622, 4095
BmcAI AGTACT 1 cut(s) 2687
Bme1390I CCNGG 7 cut(s) 291, 1122, 1359, 1647, 2016, 2764, 2899
Bme18I GGWCC 5 cut(s) 287, 455, 511, 1361, 1801
BmeRI GACNNNNNGTC 1 cut(s) 857
BmeT110I CYCGRG 3 cut(s) 627, 1890, 4041
BmgBI CACGTC 3 cut(s) 664, 713, 917
BmgT120I GGNCC 5 cut(s) 287, 455, 511, 1361, 1801
BmiI GGNNCC 9 cut(s) 512, 939, 1362, 1932, 2841, 3633, 3730, 3840, 3943
BmrFI CCNGG 7 cut(s) 291, 1122, 1359, 1647, 2016, 2764, 2899
BmrI ACTGGG 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 3845, 3877
BpmI CTGGAG 2 cut(s) 293, 2025
Bpu1102I GCTNAGC 2 cut(s) 2622, 4095
BpuEI CTTGAG 4 cut(s) 1293, 2495, 3595, 3970
BpuMI CCSGG 4 cut(s) 291, 1122, 1359, 2899
Bsa29I ATCGAT 1 cut(s) 3076
BsaAI YACGTR 1 cut(s) 549
BsaBI GATNNNNATC 2 cut(s) 144, 657
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 9 cut(s) 398, 499, 1646, 1891, 2014, 2763, 2883, 2898, 3524
BsaWI WCCGGW 3 cut(s) 1363, 1513, 1803
BsaXI ACNNNNNCTCC 6 cut(s) 1339, 1369, 1404, 1434, 3184, 3214
Bsc4I CCNNNNNNNGG 6 cut(s) 399, 603, 1913, 2119, 2496, 3761
Bse118I RCCGGY 2 cut(s) 1803, 3841
Bse1I ACTGG 3 cut(s) 319, 582, 2929
Bse3DI GCAATG 4 cut(s) 43, 2439, 2619, 3730
Bse8I GATNNNNATC 2 cut(s) 144, 657
BseAI TCCGGA 1 cut(s) 1513
BseBI CCWGG 3 cut(s) 1647, 2016, 2764
BseCI ATCGAT 1 cut(s) 3076
BseDI CCNNGG 9 cut(s) 398, 499, 1646, 1891, 2014, 2763, 2883, 2898, 3524
BseGI GGATG 9 cut(s) 216, 457, 1330, 1372, 2074, 2128, 3511, 3535, 3670
BseJI GATNNNNATC 2 cut(s) 144, 657
BseLI CCNNNNNNNGG 6 cut(s) 399, 603, 1913, 2119, 2496, 3761
BseMI GCAATG 4 cut(s) 43, 2439, 2619, 3730
BseMII CTCAG 9 cut(s) 101, 382, 552, 586, 1765, 3279, 3878, 3885, 4086
BseNI ACTGG 3 cut(s) 319, 582, 2929
BseRI GAGGAG 4 cut(s) 938, 2903, 4053, 4056
BseSI GKGCMC 2 cut(s) 916, 2491
BseYI CCCAGC 1 cut(s) 702
BsgI GTGCAG 4 cut(s) 577, 708, 3893, 3907
Bsh1236I CGCG 1 cut(s) 2066
BshFI GGCC 4 cut(s) 1537, 2882, 2897, 3845
BshNI GGYRCC 4 cut(s) 937, 2839, 3728, 3838
BshTI ACCGGT 1 cut(s) 1803
BshVI ATCGAT 1 cut(s) 3076
BsiHKAI GWGCWC 4 cut(s) 628, 840, 958, 3958
BsiHKCI CYCGRG 3 cut(s) 627, 1890, 4041
BsiSI CCGG 8 cut(s) 290, 1121, 1358, 1364, 1514, 1804, 2898, 3842
BslFI GGGAC 5 cut(s) 524, 650, 1374, 2821, 3059
BslI CCNNNNNNNGG 6 cut(s) 399, 603, 1913, 2119, 2496, 3761
BsmAI GTCTC 7 cut(s) 101, 366, 557, 1915, 3284, 3593, 3848
BsmFI GGGAC 5 cut(s) 524, 650, 1374, 2821, 3059
BsmI GAATGC 3 cut(s) 1447, 2551, 2878
BsnI GGCC 4 cut(s) 1537, 2882, 2897, 3845
Bso31I GGTCTC 1 cut(s) 366
BsoBI CYCGRG 3 cut(s) 627, 1890, 4041
Bsp1286I GDGCHC 8 cut(s) 628, 840, 916, 958, 2491, 3634, 3944, 3958
Bsp13I TCCGGA 1 cut(s) 1513
Bsp1720I GCTNAGC 2 cut(s) 2622, 4095
BspACI CCGC 9 cut(s) 341, 587, 644, 1534, 2066, 2376, 3628, 3755, 3922
BspANI GGCC 4 cut(s) 1537, 2882, 2897, 3845
BspCNI CTCAG 9 cut(s) 100, 381, 553, 585, 1764, 3280, 3877, 3886, 4087
BspDI ATCGAT 1 cut(s) 3076
BspEI TCCGGA 1 cut(s) 1513
BspFNI CGCG 1 cut(s) 2066
BspHI TCATGA 2 cut(s) 2032, 2260
BspLI GGNNCC 9 cut(s) 512, 939, 1362, 1932, 2841, 3633, 3730, 3840, 3943
BspMAI CTGCAG 1 cut(s) 681
BspMI ACCTGC 4 cut(s) 1591, 2803, 3731, 3879
BspPI GGATC 9 cut(s) 38, 290, 588, 1925, 1938, 2478, 2916, 3459, 3834
BspT107I GGYRCC 4 cut(s) 937, 2839, 3728, 3838
BspTI CTTAAG 1 cut(s) 3539
BspTNI GGTCTC 1 cut(s) 366
BsrBI CCGCTC 1 cut(s) 2376
BsrDI GCAATG 4 cut(s) 43, 2439, 2619, 3730
BsrFI RCCGGY 2 cut(s) 1803, 3841
BsrI ACTGG 3 cut(s) 319, 582, 2929
BssAI RCCGGY 2 cut(s) 1803, 3841
BssECI CCNNGG 9 cut(s) 398, 499, 1646, 1891, 2014, 2763, 2883, 2898, 3524
BssSI CACGAG 1 cut(s) 2833
BssT1I CCWWGG 4 cut(s) 398, 499, 2883, 3524
Bst2BI CACGAG 1 cut(s) 2833
Bst2UI CCWGG 3 cut(s) 1647, 2016, 2764
Bst4CI ACNGT 5 cut(s) 942, 993, 2108, 3050, 3234
Bst6I CTCTTC 5 cut(s) 770, 1005, 2562, 3235, 3982
BstAFI CTTAAG 1 cut(s) 3539
BstAPI GCANNNNNTGC 2 cut(s) 898, 2618
BstBAI YACGTR 1 cut(s) 549
BstC8I GCNNGC 8 cut(s) 681, 848, 1373, 2415, 2619, 2628, 3630, 4080
BstF5I GGATG 9 cut(s) 216, 457, 1330, 1372, 2074, 2128, 3511, 3535, 3670
BstFNI CGCG 1 cut(s) 2066
BstH2I RGCGCY 1 cut(s) 3702
BstHHI GCGC 4 cut(s) 154, 2413, 3701, 4009
BstMAI GTCTC 7 cut(s) 101, 366, 557, 1915, 3284, 3593, 3848
BstNI CCWGG 3 cut(s) 1647, 2016, 2764
BstNSI RCATGY 4 cut(s) 1375, 1525, 3785, 3801
BstSCI CCNGG 7 cut(s) 289, 1120, 1357, 1645, 2014, 2762, 2897
BstSFI CTRYAG 4 cut(s) 677, 989, 1233, 2694
BstSLI GKGCMC 2 cut(s) 916, 2491
BstUI CGCG 1 cut(s) 2066
BstX2I RGATCY 7 cut(s) 30, 295, 1930, 2470, 2908, 3451, 3645
BstYI RGATCY 7 cut(s) 30, 295, 1930, 2470, 2908, 3451, 3645
Bsu15I ATCGAT 1 cut(s) 3076
BsuI GTATCC 2 cut(s) 339, 1353
BsuRI GGCC 4 cut(s) 1537, 2882, 2897, 3845
BsuTUI ATCGAT 1 cut(s) 3076
BtgZI GCGATG 1 cut(s) 704
BtrI CACGTC 3 cut(s) 664, 713, 917
BtsCI GGATG 9 cut(s) 216, 457, 1330, 1372, 2074, 2128, 3511, 3535, 3670
BtsI GCAGTG 1 cut(s) 1850
BtsIMutI CAGTG 6 cut(s) 1182, 1659, 1850, 1863, 2187, 3645
BveI ACCTGC 4 cut(s) 1591, 2803, 3731, 3879
Cac8I GCNNGC 8 cut(s) 681, 848, 1373, 2415, 2619, 2628, 3630, 4080
CaiI CAGNNNCTG 1 cut(s) 2911
CciI TCATGA 2 cut(s) 2032, 2260
CfoI GCGC 4 cut(s) 154, 2413, 3701, 4009
Cfr10I RCCGGY 2 cut(s) 1803, 3841
Cfr13I GGNCC 5 cut(s) 287, 455, 511, 1361, 1801
ClaI ATCGAT 1 cut(s) 3076
CseI GACGC 3 cut(s) 1238, 1287, 2818
Csp6I GTAC 6 cut(s) 246, 607, 938, 2686, 2903, 3839
CspAI ACCGGT 1 cut(s) 1803
CspCI CAANNNNNGTGG 2 cut(s) 3366, 3401
CviQI GTAC 6 cut(s) 246, 607, 938, 2686, 2903, 3839
DriI GACNNNNNGTC 1 cut(s) 857
EaeI YGGCCR 3 cut(s) 1535, 2895, 3843
Eam1104I CTCTTC 5 cut(s) 770, 1005, 2562, 3235, 3982
Eam1105I GACNNNNNGTC 1 cut(s) 857
EarI CTCTTC 5 cut(s) 770, 1005, 2562, 3235, 3982
EciI GGCGGA 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 3956
Eco130I CCWWGG 4 cut(s) 398, 499, 2883, 3524
Eco24I GRGCYC 3 cut(s) 3634, 3944, 3958
Eco31I GGTCTC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 5 cut(s) 287, 455, 511, 1361, 1801
Eco47III AGCGCT 1 cut(s) 3700
Eco53kI GAGCTC 1 cut(s) 3956
Eco57I CTGAAG 1 cut(s) 731
Eco88I CYCGRG 3 cut(s) 627, 1890, 4041
EcoICRI GAGCTC 1 cut(s) 3956
EcoO109I RGGNCCY 1 cut(s) 511
EcoRI GAATTC 2 cut(s) 556, 1111
EcoRII CCWGG 3 cut(s) 1645, 2014, 2762
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 4 cut(s) 398, 499, 2883, 3524
EcoT22I ATGCAT 1 cut(s) 1330
EcoT38I GRGCYC 3 cut(s) 3634, 3944, 3958
ErhI CCWWGG 4 cut(s) 398, 499, 2883, 3524
FalI AAGNNNNNCTT 2 cut(s) 3232, 3264
FaqI GGGAC 5 cut(s) 524, 650, 1374, 2821, 3059
FauI CCCGC 1 cut(s) 3621
FauNDI CATATG 2 cut(s) 1762, 4107
FbaI TGATCA 3 cut(s) 1656, 2397, 3676
FblI GTMKAC 2 cut(s) 545, 2233
FokI GGATG 9 cut(s) 223, 464, 1337, 1379, 2081, 2135, 3518, 3542, 3677
FriOI GRGCYC 3 cut(s) 3634, 3944, 3958
GlaI GCGC 4 cut(s) 153, 2412, 3700, 4008
GsaI CCCAGC 1 cut(s) 706
GsuI CTGGAG 2 cut(s) 293, 2025
HaeII RGCGCY 1 cut(s) 3702
HaeIII GGCC 4 cut(s) 1537, 2882, 2897, 3845
HapII CCGG 8 cut(s) 290, 1121, 1358, 1364, 1514, 1804, 2898, 3842
HgaI GACGC 3 cut(s) 1238, 1287, 2818
HhaI GCGC 4 cut(s) 154, 2413, 3701, 4009
Hin6I GCGC 4 cut(s) 152, 2411, 3699, 4007
HinP1I GCGC 4 cut(s) 152, 2411, 3699, 4007
HincII GTYRAC 3 cut(s) 1457, 2451, 3521
HindII GTYRAC 3 cut(s) 1457, 2451, 3521
HindIII AAGCTT 4 cut(s) 1289, 2345, 2415, 3381
HpaI GTTAAC 1 cut(s) 2451
HpaII CCGG 8 cut(s) 290, 1121, 1358, 1364, 1514, 1804, 2898, 3842
HphI GGTGA 3 cut(s) 767, 1849, 2650
Hpy99I CGWCG 2 cut(s) 717, 1303
HpyCH4III ACNGT 5 cut(s) 942, 993, 2108, 3050, 3234
HpyCH4IV ACGT 6 cut(s) 548, 663, 712, 795, 916, 2266
HpySE526I ACGT 6 cut(s) 548, 663, 712, 795, 916, 2266
HspAI GCGC 4 cut(s) 152, 2411, 3699, 4007
Kpn2I TCCGGA 1 cut(s) 1513
KpnI GGTACC 2 cut(s) 941, 3842
Ksp22I TGATCA 3 cut(s) 1656, 2397, 3676
KspAI GTTAAC 1 cut(s) 2451
LmnI GCTCC 5 cut(s) 1412, 2044, 2378, 3637, 3947
MaeII ACGT 6 cut(s) 548, 663, 712, 795, 916, 2266
MaeIII GTNAC 9 cut(s) 708, 993, 1002, 1180, 1267, 1420, 2108, 3228, 3392
MbiI CCGCTC 1 cut(s) 2376
MfeI CAATTG 3 cut(s) 362, 1539, 3881
MflI RGATCY 7 cut(s) 30, 295, 1930, 2470, 2908, 3451, 3645
MhlI GDGCHC 8 cut(s) 628, 840, 916, 958, 2491, 3634, 3944, 3958
MlyI GAGTC 7 cut(s) 564, 639, 846, 2239, 2708, 2825, 3854
MmeI TCCRAC 8 cut(s) 429, 658, 1414, 1506, 1805, 2808, 2912, 3018
Mph1103I ATGCAT 1 cut(s) 1330
MroI TCCGGA 1 cut(s) 1513
MslI CAYNNNNRTG 2 cut(s) 1199, 3796
MspA1I CMGCKG 4 cut(s) 1418, 3757, 3776, 4094
MspCI CTTAAG 1 cut(s) 3539
MspI CCGG 8 cut(s) 290, 1121, 1358, 1364, 1514, 1804, 2898, 3842
MspR9I CCNGG 7 cut(s) 291, 1122, 1359, 1647, 2016, 2764, 2899
MunI CAATTG 3 cut(s) 362, 1539, 3881
Mva1269I GAATGC 3 cut(s) 1447, 2551, 2878
MvaI CCWGG 3 cut(s) 1647, 2016, 2764
MvnI CGCG 1 cut(s) 2066
NciI CCSGG 4 cut(s) 291, 1122, 1359, 2899
NdeI CATATG 2 cut(s) 1762, 4107
NlaIV GGNNCC 9 cut(s) 512, 939, 1362, 1932, 2841, 3633, 3730, 3840, 3943
NmeAIII GCCGAG 1 cut(s) 672
NmuCI GTSAC 6 cut(s) 708, 993, 1002, 1180, 1267, 3392
NsiI ATGCAT 1 cut(s) 1330
NspI RCATGY 4 cut(s) 1375, 1525, 3785, 3801
PaeI GCATGC 1 cut(s) 1375
PaeR7I CTCGAG 2 cut(s) 627, 4041
PagI TCATGA 2 cut(s) 2032, 2260
PaqCI CACCTGC 1 cut(s) 3731
PciI ACATGT 1 cut(s) 1521
PctI GAATGC 3 cut(s) 1447, 2551, 2878
PfoI TCCNGGA 2 cut(s) 289, 1357
PinAI ACCGGT 1 cut(s) 1803
PleI GAGTC 7 cut(s) 564, 638, 846, 2238, 2707, 2825, 3854
PpsI GAGTC 7 cut(s) 564, 638, 846, 2238, 2707, 2825, 3854
Ppu21I YACGTR 1 cut(s) 549
PpuMI RGGWCCY 1 cut(s) 511
PscI ACATGT 1 cut(s) 1521
PshBI ATTAAT 2 cut(s) 2949, 3657
PsiI TTATAA 1 cut(s) 2676
Psp124BI GAGCTC 1 cut(s) 3958
Psp1406I AACGTT 1 cut(s) 2266
Psp5II RGGWCCY 1 cut(s) 511
Psp6I CCWGG 3 cut(s) 1645, 2014, 2762
PspFI CCCAGC 1 cut(s) 702
PspGI CCWGG 3 cut(s) 1645, 2014, 2762
PspN4I GGNNCC 9 cut(s) 512, 939, 1362, 1932, 2841, 3633, 3730, 3840, 3943
PspPI GGNCC 5 cut(s) 287, 455, 511, 1361, 1801
PspPPI RGGWCCY 1 cut(s) 511
PspXI VCTCGAGB 1 cut(s) 627
PstI CTGCAG 1 cut(s) 681
PstNI CAGNNNCTG 1 cut(s) 2911
PsuI RGATCY 7 cut(s) 30, 295, 1930, 2470, 2908, 3451, 3645
PvuII CAGCTG 3 cut(s) 1418, 3776, 4094
RsaI GTAC 6 cut(s) 247, 608, 939, 2687, 2904, 3840
RsaNI GTAC 6 cut(s) 246, 607, 938, 2686, 2903, 3839
RseI CAYNNNNRTG 2 cut(s) 1199, 3796
SacI GAGCTC 1 cut(s) 3958
Sau96I GGNCC 5 cut(s) 287, 455, 511, 1361, 1801
ScaI AGTACT 1 cut(s) 2687
SchI GAGTC 7 cut(s) 564, 639, 846, 2239, 2708, 2825, 3854
ScrFI CCNGG 7 cut(s) 291, 1122, 1359, 1647, 2016, 2764, 2899
SduI GDGCHC 8 cut(s) 628, 840, 916, 958, 2491, 3634, 3944, 3958
SfcI CTRYAG 4 cut(s) 677, 989, 1233, 2694
Sfr274I CTCGAG 2 cut(s) 627, 4041
SinI GGWCC 5 cut(s) 287, 455, 511, 1361, 1801
SlaI CTCGAG 2 cut(s) 627, 4041
SmiMI CAYNNNNRTG 2 cut(s) 1199, 3796
SmlI CTYRAG 7 cut(s) 627, 1308, 2474, 3539, 3610, 3949, 4041
SmoI CTYRAG 7 cut(s) 627, 1308, 2474, 3539, 3610, 3949, 4041
SphI GCATGC 1 cut(s) 1375
SsiI CCGC 9 cut(s) 341, 587, 644, 1534, 2066, 2376, 3628, 3755, 3922
SspI AATATT 1 cut(s) 672
SstI GAGCTC 1 cut(s) 3958
StyD4I CCNGG 7 cut(s) 289, 1120, 1357, 1645, 2014, 2762, 2897
StyI CCWWGG 4 cut(s) 398, 499, 2883, 3524
TaaI ACNGT 5 cut(s) 942, 993, 2108, 3050, 3234
TaiI ACGT 6 cut(s) 551, 666, 715, 798, 919, 2269
TatI WGTACW 1 cut(s) 2685
TauI GCSGC 2 cut(s) 1537, 3925
TscAI CASTG 6 cut(s) 1189, 1666, 1850, 1863, 2187, 3645
TseFI GTSAC 6 cut(s) 708, 993, 1002, 1180, 1267, 3392
Tsp45I GTSAC 6 cut(s) 708, 993, 1002, 1180, 1267, 3392
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 6 cut(s) 1189, 1666, 1850, 1863, 2187, 3645
Vha464I CTTAAG 1 cut(s) 3539
VpaK11BI GGWCC 5 cut(s) 287, 455, 511, 1361, 1801
VspI ATTAAT 2 cut(s) 2949, 3657
XapI RAATTY 5 cut(s) 426, 556, 728, 1111, 1566
XbaI TCTAGA 3 cut(s) 919, 3101, 3236
XceI RCATGY 4 cut(s) 1375, 1525, 3785, 3801
XhoI CTCGAG 2 cut(s) 627, 4041
XmaJI CCTAGG 1 cut(s) 499
XmiI GTMKAC 2 cut(s) 545, 2233
ZrmI AGTACT 1 cut(s) 2687
Zsp2I ATGCAT 1 cut(s) 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.