Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G32460 AT2G32460 |
| fragaria_vesca | FvH4_6g43080 |
| malus_domestica | MD09G1109900.v1.1 |
| prunus_persica | Prupe.3G216600_v2.0.a1 |
| pyrus_communis | pycom09g03240 |
| rosa_chinensis | RchiOBHm_Chr2g0159111 |
| rosa_laevigata | RLG00000021138 |
| rosa_multiflora | Rmu_sc0013510.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00090770 |
| rosa_rugosa | Rorug02G0474000.1 Rorug02G0474100 |
| rosa_samantha | Rh2AG540900 Rh2BG553800 Rh2CG523900 Rh2DG563400 |
| rosa_wichuraiana | Rw2G044750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1498 |
| AatII | GACGTC | 2 cut(s) | 1406, 1502 |
| Acc36I | ACCTGC | 1 cut(s) | 1219 |
| Acc65I | GGTACC | 1 cut(s) | 1410 |
| AccB1I | GGYRCC | 3 cut(s) | 1057, 1384, 1410 |
| AccII | CGCG | 1 cut(s) | 188 |
| AclWI | GGATC | 4 cut(s) | 149, 1322, 1335, 1447 |
| AcoI | YGGCCR | 1 cut(s) | 1098 |
| AcsI | RAATTY | 2 cut(s) | 199, 323 |
| AcuI | CTGAAG | 3 cut(s) | 128, 741, 818 |
| AcyI | GRCGYC | 3 cut(s) | 415, 1403, 1499 |
| AfaI | GTAC | 3 cut(s) | 155, 845, 1412 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 112, 124, 1067, 1557 |
| AgeI | ACCGGT | 1 cut(s) | 1054 |
| AgsI | TTSAA | 4 cut(s) | 709, 769, 1132, 1246 |
| AjnI | CCWGG | 2 cut(s) | 1413, 1570 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 997, 1029 |
| AluBI | AGCT | 7 cut(s) | 53, 228, 592, 761, 891, 958, 1290 |
| AluI | AGCT | 7 cut(s) | 53, 228, 592, 761, 891, 958, 1290 |
| Alw21I | GWGCWC | 1 cut(s) | 960 |
| Alw26I | GTCTC | 4 cut(s) | 305, 490, 1085, 1394 |
| AlwI | GGATC | 4 cut(s) | 149, 1322, 1335, 1447 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 470, 1397 |
| AoxI | GGCC | 7 cut(s) | 103, 115, 243, 257, 423, 904, 1098 |
| ApaI | GGGCCC | 2 cut(s) | 119, 908 |
| ApoI | RAATTY | 2 cut(s) | 199, 323 |
| AsiGI | ACCGGT | 1 cut(s) | 1054 |
| Asp718I | GGTACC | 1 cut(s) | 1410 |
| AspLEI | GCGC | 1 cut(s) | 1539 |
| AsuC2I | CCSGG | 1 cut(s) | 363 |
| AsuHPI | GGTGA | 4 cut(s) | 604, 691, 1268, 1516 |
| AsuII | TTCGAA | 2 cut(s) | 965, 1118 |
| AvaII | GGWCC | 4 cut(s) | 66, 744, 807, 945 |
| AxyI | CCTNAGG | 1 cut(s) | 1543 |
| BaeGI | GKGCMC | 2 cut(s) | 119, 908 |
| BamHI | GGATCC | 1 cut(s) | 1327 |
| BanI | GGYRCC | 3 cut(s) | 1057, 1384, 1410 |
| BanII | GRGCYC | 4 cut(s) | 119, 343, 908, 960 |
| BbsI | GAAGAC | 2 cut(s) | 718, 1514 |
| Bbv12I | GWGCWC | 1 cut(s) | 960 |
| BbvCI | CCTCAGC | 1 cut(s) | 887 |
| BccI | CCATC | 6 cut(s) | 131, 142, 704, 848, 1069, 1336 |
| BceAI | ACGGC | 4 cut(s) | 141, 184, 992, 1530 |
| BciT130I | CCWGG | 2 cut(s) | 1415, 1572 |
| BclI | TGATCA | 1 cut(s) | 1036 |
| BcnI | CCSGG | 1 cut(s) | 363 |
| BcoDI | GTCTC | 4 cut(s) | 305, 490, 1085, 1394 |
| BfaI | CTAG | 2 cut(s) | 1334, 1466 |
| BfmI | CTRYAG | 1 cut(s) | 229 |
| BfuAI | ACCTGC | 1 cut(s) | 1219 |
| Bme1390I | CCNGG | 3 cut(s) | 363, 1415, 1572 |
| Bme18I | GGWCC | 4 cut(s) | 66, 744, 807, 945 |
| BmrFI | CCNGG | 3 cut(s) | 363, 1415, 1572 |
| BmsI | GCATC | 2 cut(s) | 100, 847 |
| BpiI | GAAGAC | 2 cut(s) | 718, 1514 |
| BpmI | CTGGAG | 1 cut(s) | 437 |
| Bpu10I | CCTNAGC | 2 cut(s) | 236, 887 |
| Bpu14I | TTCGAA | 2 cut(s) | 965, 1118 |
| BpuEI | CTTGAG | 1 cut(s) | 251 |
| BpuMI | CCSGG | 1 cut(s) | 363 |
| BsaAI | YACGTR | 1 cut(s) | 157 |
| BsaHI | GRCGYC | 3 cut(s) | 415, 1403, 1499 |
| BsaI | GGTCTC | 1 cut(s) | 1085 |
| BsaJI | CCNNGG | 3 cut(s) | 119, 1101, 1512 |
| BsaWI | WCCGGW | 1 cut(s) | 1054 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1181, 1211 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 112, 124, 1067, 1557 |
| Bse118I | RCCGGY | 2 cut(s) | 425, 1054 |
| Bse1I | ACTGG | 4 cut(s) | 185, 398, 434, 1562 |
| Bse21I | CCTNAGG | 1 cut(s) | 1543 |
| Bse3DI | GCAATG | 2 cut(s) | 676, 721 |
| BseBI | CCWGG | 2 cut(s) | 1415, 1572 |
| BseDI | CCNNGG | 3 cut(s) | 119, 1101, 1512 |
| BseGI | GGATG | 6 cut(s) | 142, 536, 783, 1093, 1222, 1288 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 112, 124, 1067, 1557 |
| BseMI | GCAATG | 2 cut(s) | 676, 721 |
| BseMII | CTCAG | 8 cut(s) | 68, 250, 368, 645, 901, 1349, 1389, 1487 |
| BseNI | ACTGG | 4 cut(s) | 185, 398, 434, 1562 |
| BseSI | GKGCMC | 2 cut(s) | 119, 908 |
| BseYI | CCCAGC | 3 cut(s) | 555, 569, 588 |
| BsgI | GTGCAG | 2 cut(s) | 212, 1247 |
| Bsh1236I | CGCG | 1 cut(s) | 188 |
| BshFI | GGCC | 7 cut(s) | 105, 117, 245, 259, 425, 906, 1100 |
| BshNI | GGYRCC | 3 cut(s) | 1057, 1384, 1410 |
| BshTI | ACCGGT | 1 cut(s) | 1054 |
| BsiHKAI | GWGCWC | 1 cut(s) | 960 |
| BsiSI | CCGG | 3 cut(s) | 363, 426, 1055 |
| BslFI | GGGAC | 2 cut(s) | 52, 1279 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 112, 124, 1067, 1557 |
| BsmAI | GTCTC | 4 cut(s) | 305, 490, 1085, 1394 |
| BsmBI | CGTCTC | 2 cut(s) | 305, 1394 |
| BsmFI | GGGAC | 2 cut(s) | 52, 1279 |
| BsmI | GAATGC | 1 cut(s) | 1427 |
| BsnI | GGCC | 7 cut(s) | 105, 117, 245, 259, 425, 906, 1100 |
| Bso31I | GGTCTC | 1 cut(s) | 1085 |
| Bsp119I | TTCGAA | 2 cut(s) | 965, 1118 |
| Bsp120I | GGGCCC | 2 cut(s) | 115, 904 |
| Bsp1286I | GDGCHC | 4 cut(s) | 119, 343, 908, 960 |
| Bsp143I | GATC | 6 cut(s) | 141, 634, 894, 1036, 1327, 1439 |
| BspANI | GGCC | 7 cut(s) | 105, 117, 245, 259, 425, 906, 1100 |
| BspCNI | CTCAG | 8 cut(s) | 67, 249, 367, 644, 900, 1350, 1390, 1486 |
| BspFNI | CGCG | 1 cut(s) | 188 |
| BspHI | TCATGA | 1 cut(s) | 34 |
| BspMAI | CTGCAG | 1 cut(s) | 233 |
| BspMI | ACCTGC | 1 cut(s) | 1219 |
| BspPI | GGATC | 4 cut(s) | 149, 1322, 1335, 1447 |
| BspQI | GCTCTTC | 1 cut(s) | 288 |
| BspT104I | TTCGAA | 2 cut(s) | 965, 1118 |
| BspT107I | GGYRCC | 3 cut(s) | 1057, 1384, 1410 |
| BspTNI | GGTCTC | 1 cut(s) | 1085 |
| BsrDI | GCAATG | 2 cut(s) | 676, 721 |
| BsrFI | RCCGGY | 2 cut(s) | 425, 1054 |
| BsrI | ACTGG | 4 cut(s) | 185, 398, 434, 1562 |
| BssAI | RCCGGY | 2 cut(s) | 425, 1054 |
| BssECI | CCNNGG | 3 cut(s) | 119, 1101, 1512 |
| BssMI | GATC | 6 cut(s) | 141, 634, 894, 1036, 1327, 1439 |
| BssNI | GRCGYC | 3 cut(s) | 415, 1403, 1499 |
| Bst2UI | CCWGG | 2 cut(s) | 1415, 1572 |
| Bst4CI | ACNGT | 3 cut(s) | 1145, 1225, 1384 |
| Bst6I | CTCTTC | 5 cut(s) | 288, 508, 770, 1127, 1188 |
| BstACI | GRCGYC | 3 cut(s) | 415, 1403, 1499 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 228, 470 |
| BstBAI | YACGTR | 1 cut(s) | 157 |
| BstBI | TTCGAA | 2 cut(s) | 965, 1118 |
| BstC8I | GCNNGC | 5 cut(s) | 233, 278, 343, 1389, 1552 |
| BstDSI | CCRYGG | 2 cut(s) | 119, 1512 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 110 |
| BstF5I | GGATG | 6 cut(s) | 142, 536, 783, 1093, 1222, 1288 |
| BstFNI | CGCG | 1 cut(s) | 188 |
| BstHHI | GCGC | 1 cut(s) | 1539 |
| BstKTI | GATC | 6 cut(s) | 144, 637, 897, 1039, 1330, 1442 |
| BstMAI | GTCTC | 4 cut(s) | 305, 490, 1085, 1394 |
| BstMBI | GATC | 6 cut(s) | 141, 634, 894, 1036, 1327, 1439 |
| BstNI | CCWGG | 2 cut(s) | 1415, 1572 |
| BstNSI | RCATGY | 2 cut(s) | 1429, 1570 |
| BstSCI | CCNGG | 3 cut(s) | 361, 1413, 1570 |
| BstSFI | CTRYAG | 1 cut(s) | 229 |
| BstSLI | GKGCMC | 2 cut(s) | 119, 908 |
| BstUI | CGCG | 1 cut(s) | 188 |
| BstV2I | GAAGAC | 2 cut(s) | 718, 1514 |
| BstX2I | RGATCY | 2 cut(s) | 141, 1327 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 710 |
| BstYI | RGATCY | 2 cut(s) | 141, 1327 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1543 |
| BsuRI | GGCC | 7 cut(s) | 105, 117, 245, 259, 425, 906, 1100 |
| BtgI | CCRYGG | 2 cut(s) | 119, 1512 |
| BtgZI | GCGATG | 1 cut(s) | 1008 |
| BtsCI | GGATG | 6 cut(s) | 142, 536, 783, 1093, 1222, 1288 |
| BveI | ACCTGC | 1 cut(s) | 1219 |
| Cac8I | GCNNGC | 5 cut(s) | 233, 278, 343, 1389, 1552 |
| CaiI | CAGNNNCTG | 2 cut(s) | 470, 1397 |
| CciI | TCATGA | 1 cut(s) | 34 |
| CfoI | GCGC | 1 cut(s) | 1539 |
| Cfr10I | RCCGGY | 2 cut(s) | 425, 1054 |
| CseI | GACGC | 2 cut(s) | 287, 423 |
| Csp6I | GTAC | 3 cut(s) | 154, 844, 1411 |
| CspAI | ACCGGT | 1 cut(s) | 1054 |
| CviAII | CATG | 7 cut(s) | 35, 346, 901, 989, 1312, 1426, 1567 |
| CviQI | GTAC | 3 cut(s) | 154, 844, 1411 |
| DpnI | GATC | 6 cut(s) | 143, 636, 896, 1038, 1329, 1441 |
| DpnII | GATC | 6 cut(s) | 141, 634, 894, 1036, 1327, 1439 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1498 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1498 |
| EaeI | YGGCCR | 1 cut(s) | 1098 |
| Eam1104I | CTCTTC | 5 cut(s) | 288, 508, 770, 1127, 1188 |
| EarI | CTCTTC | 5 cut(s) | 288, 508, 770, 1127, 1188 |
| EciI | GGCGGA | 2 cut(s) | 56, 146 |
| Ecl136II | GAGCTC | 1 cut(s) | 958 |
| Eco147I | AGGCCT | 1 cut(s) | 259 |
| Eco24I | GRGCYC | 4 cut(s) | 119, 343, 908, 960 |
| Eco31I | GGTCTC | 1 cut(s) | 1085 |
| Eco47I | GGWCC | 4 cut(s) | 66, 744, 807, 945 |
| Eco53kI | GAGCTC | 1 cut(s) | 958 |
| Eco57I | CTGAAG | 3 cut(s) | 128, 741, 818 |
| Eco81I | CCTNAGG | 1 cut(s) | 1543 |
| EcoICRI | GAGCTC | 1 cut(s) | 958 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 110 |
| EcoO109I | RGGNCCY | 6 cut(s) | 66, 103, 115, 744, 807, 905 |
| EcoRI | GAATTC | 1 cut(s) | 199 |
| EcoRII | CCWGG | 2 cut(s) | 1413, 1570 |
| EcoT22I | ATGCAT | 1 cut(s) | 1427 |
| EcoT38I | GRGCYC | 4 cut(s) | 119, 343, 908, 960 |
| Esp3I | CGTCTC | 2 cut(s) | 305, 1394 |
| FaeI | CATG | 7 cut(s) | 38, 349, 904, 992, 1315, 1429, 1570 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 264, 296 |
| FaqI | GGGAC | 2 cut(s) | 52, 1279 |
| FatI | CATG | 7 cut(s) | 34, 345, 900, 988, 1311, 1425, 1566 |
| FauI | CCCGC | 5 cut(s) | 56, 93, 592, 922, 934 |
| FauNDI | CATATG | 1 cut(s) | 1577 |
| FbaI | TGATCA | 1 cut(s) | 1036 |
| FokI | GGATG | 6 cut(s) | 149, 523, 770, 1100, 1229, 1295 |
| FriOI | GRGCYC | 4 cut(s) | 119, 343, 908, 960 |
| FspBI | CTAG | 2 cut(s) | 1334, 1466 |
| GlaI | GCGC | 1 cut(s) | 1538 |
| GsaI | CCCAGC | 3 cut(s) | 559, 573, 592 |
| GsuI | CTGGAG | 1 cut(s) | 437 |
| HaeIII | GGCC | 7 cut(s) | 105, 117, 245, 259, 425, 906, 1100 |
| HapII | CCGG | 3 cut(s) | 363, 426, 1055 |
| HgaI | GACGC | 2 cut(s) | 287, 423 |
| HhaI | GCGC | 1 cut(s) | 1539 |
| Hin1I | GRCGYC | 3 cut(s) | 415, 1403, 1499 |
| Hin1II | CATG | 7 cut(s) | 38, 349, 904, 992, 1315, 1429, 1570 |
| Hin6I | GCGC | 1 cut(s) | 1537 |
| HinP1I | GCGC | 1 cut(s) | 1537 |
| HincII | GTYRAC | 1 cut(s) | 1491 |
| HindII | GTYRAC | 1 cut(s) | 1491 |
| HinfI | GANTC | 3 cut(s) | 920, 1196, 1235 |
| HpaII | CCGG | 3 cut(s) | 363, 426, 1055 |
| HphI | GGTGA | 4 cut(s) | 604, 691, 1268, 1516 |
| Hpy166II | GTNNAC | 5 cut(s) | 25, 123, 431, 439, 1491 |
| Hpy188I | TCNGA | 4 cut(s) | 57, 634, 853, 1399 |
| Hpy188III | TCNNGA | 6 cut(s) | 35, 145, 268, 446, 1161, 1466 |
| Hpy8I | GTNNAC | 5 cut(s) | 25, 123, 431, 439, 1491 |
| Hpy99I | CGWCG | 4 cut(s) | 293, 417, 1408, 1504 |
| HpyAV | CCTTC | 5 cut(s) | 106, 360, 628, 921, 972 |
| HpyCH4III | ACNGT | 3 cut(s) | 1145, 1225, 1384 |
| HpyCH4IV | ACGT | 3 cut(s) | 156, 1403, 1499 |
| HpyCH4V | TGCA | 6 cut(s) | 193, 231, 953, 1052, 1228, 1425 |
| HpySE526I | ACGT | 3 cut(s) | 156, 1403, 1499 |
| Hsp92I | GRCGYC | 3 cut(s) | 415, 1403, 1499 |
| Hsp92II | CATG | 7 cut(s) | 38, 349, 904, 992, 1315, 1429, 1570 |
| HspAI | GCGC | 1 cut(s) | 1537 |
| KflI | GGGWCCC | 1 cut(s) | 66 |
| KpnI | GGTACC | 1 cut(s) | 1414 |
| Ksp22I | TGATCA | 1 cut(s) | 1036 |
| Kzo9I | GATC | 6 cut(s) | 141, 634, 894, 1036, 1327, 1439 |
| LguI | GCTCTTC | 1 cut(s) | 288 |
| LmnI | GCTCC | 4 cut(s) | 826, 963, 1006, 1547 |
| LweI | GCATC | 2 cut(s) | 100, 847 |
| MaeI | CTAG | 2 cut(s) | 1334, 1466 |
| MaeII | ACGT | 3 cut(s) | 156, 1403, 1499 |
| MaeIII | GTNAC | 1 cut(s) | 357 |
| MalI | GATC | 6 cut(s) | 143, 636, 896, 1038, 1329, 1441 |
| MboI | GATC | 6 cut(s) | 141, 634, 894, 1036, 1327, 1439 |
| MfeI | CAATTG | 1 cut(s) | 1305 |
| MflI | RGATCY | 2 cut(s) | 141, 1327 |
| MhlI | GDGCHC | 4 cut(s) | 119, 343, 908, 960 |
| MluCI | AATT | 7 cut(s) | 199, 323, 658, 704, 847, 1047, 1305 |
| MlyI | GAGTC | 2 cut(s) | 914, 1205 |
| MmeI | TCCRAC | 3 cut(s) | 573, 714, 1455 |
| Mph1103I | ATGCAT | 1 cut(s) | 1427 |
| MseI | TTAA | 1 cut(s) | 1582 |
| MslI | CAYNNNNRTG | 2 cut(s) | 669, 993 |
| MspA1I | CMGCKG | 4 cut(s) | 18, 100, 467, 1437 |
| MspI | CCGG | 3 cut(s) | 363, 426, 1055 |
| MspR9I | CCNGG | 3 cut(s) | 363, 1415, 1572 |
| MunI | CAATTG | 1 cut(s) | 1305 |
| Mva1269I | GAATGC | 1 cut(s) | 1427 |
| MvaI | CCWGG | 2 cut(s) | 1415, 1572 |
| MvnI | CGCG | 1 cut(s) | 188 |
| NciI | CCSGG | 1 cut(s) | 363 |
| NdeI | CATATG | 1 cut(s) | 1577 |
| NdeII | GATC | 6 cut(s) | 141, 634, 894, 1036, 1327, 1439 |
| NlaIII | CATG | 7 cut(s) | 38, 349, 904, 992, 1315, 1429, 1570 |
| NmeAIII | GCCGAG | 1 cut(s) | 1126 |
| NsiI | ATGCAT | 1 cut(s) | 1427 |
| NspI | RCATGY | 2 cut(s) | 1429, 1570 |
| NspV | TTCGAA | 2 cut(s) | 965, 1118 |
| PagI | TCATGA | 1 cut(s) | 34 |
| PceI | AGGCCT | 1 cut(s) | 259 |
| PciSI | GCTCTTC | 1 cut(s) | 288 |
| PctI | GAATGC | 1 cut(s) | 1427 |
| PfeI | GAWTC | 1 cut(s) | 1235 |
| PinAI | ACCGGT | 1 cut(s) | 1054 |
| PleI | GAGTC | 2 cut(s) | 914, 1204 |
| PpsI | GAGTC | 2 cut(s) | 914, 1204 |
| Ppu21I | YACGTR | 1 cut(s) | 157 |
| PpuMI | RGGWCCY | 3 cut(s) | 66, 744, 807 |
| Psp124BI | GAGCTC | 1 cut(s) | 960 |
| Psp5II | RGGWCCY | 3 cut(s) | 66, 744, 807 |
| Psp6I | CCWGG | 2 cut(s) | 1413, 1570 |
| PspFI | CCCAGC | 3 cut(s) | 555, 569, 588 |
| PspGI | CCWGG | 2 cut(s) | 1413, 1570 |
| PspOMI | GGGCCC | 2 cut(s) | 115, 904 |
| PspPPI | RGGWCCY | 3 cut(s) | 66, 744, 807 |
| PstI | CTGCAG | 1 cut(s) | 233 |
| PstNI | CAGNNNCTG | 2 cut(s) | 470, 1397 |
| PsuI | RGATCY | 2 cut(s) | 141, 1327 |
| RsaI | GTAC | 3 cut(s) | 155, 845, 1412 |
| RsaNI | GTAC | 3 cut(s) | 154, 844, 1411 |
| RseI | CAYNNNNRTG | 2 cut(s) | 669, 993 |
| SacI | GAGCTC | 1 cut(s) | 960 |
| SapI | GCTCTTC | 1 cut(s) | 288 |
| SaqAI | TTAA | 1 cut(s) | 1582 |
| Sau3AI | GATC | 6 cut(s) | 141, 634, 894, 1036, 1327, 1439 |
| SchI | GAGTC | 2 cut(s) | 914, 1205 |
| ScrFI | CCNGG | 3 cut(s) | 363, 1415, 1572 |
| SduI | GDGCHC | 4 cut(s) | 119, 343, 908, 960 |
| SfaNI | GCATC | 2 cut(s) | 100, 847 |
| SfcI | CTRYAG | 1 cut(s) | 229 |
| SfuI | TTCGAA | 2 cut(s) | 965, 1118 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1054 |
| SinI | GGWCC | 4 cut(s) | 66, 744, 807, 945 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 669, 993 |
| SmlI | CTYRAG | 1 cut(s) | 266 |
| SmoI | CTYRAG | 1 cut(s) | 266 |
| Sse9I | AATT | 7 cut(s) | 199, 323, 658, 704, 847, 1047, 1305 |
| SseBI | AGGCCT | 1 cut(s) | 259 |
| SspMI | CTAG | 2 cut(s) | 1334, 1466 |
| SstI | GAGCTC | 1 cut(s) | 960 |
| StuI | AGGCCT | 1 cut(s) | 259 |
| StyD4I | CCNGG | 3 cut(s) | 361, 1413, 1570 |
| TaaI | ACNGT | 3 cut(s) | 1145, 1225, 1384 |
| TaiI | ACGT | 3 cut(s) | 159, 1406, 1502 |
| TaqI | TCGA | 5 cut(s) | 309, 893, 965, 1118, 1233 |
| TasI | AATT | 7 cut(s) | 199, 323, 658, 704, 847, 1047, 1305 |
| TatI | WGTACW | 1 cut(s) | 843 |
| TauI | GCSGC | 4 cut(s) | 50, 131, 222, 470 |
| TfiI | GAWTC | 1 cut(s) | 1235 |
| Tru1I | TTAA | 1 cut(s) | 1582 |
| Tru9I | TTAA | 1 cut(s) | 1582 |
| TspDTI | ATGAA | 7 cut(s) | 23, 393, 519, 977, 1044, 1059, 1328 |
| TspGWI | ACGGA | 1 cut(s) | 42 |
| VpaK11BI | GGWCC | 4 cut(s) | 66, 744, 807, 945 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 110 |
| XapI | RAATTY | 2 cut(s) | 199, 323 |
| XbaI | TCTAGA | 1 cut(s) | 1465 |
| XceI | RCATGY | 2 cut(s) | 1429, 1570 |
| XspI | CTAG | 2 cut(s) | 1334, 1466 |
| ZraI | GACGTC | 2 cut(s) | 1404, 1500 |
| Zsp2I | ATGCAT | 1 cut(s) | 1427 |