Rroxscaffold_2G00090770
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014534
Physical Location & Seq
Reverse (-)
12494523 .. 12496832
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090770.1

Sequence Viewer

Length: 1584 bp
ATGATCATGAGCAACAGCGGAGATGGATCAATGGACTTGAACGAGATGGTTGCGGCAGCCCAGTTAGGAGGTGGGGCCCACCAGCTTCATCAGCCCCTGCGGGGGTTGAAGAAGGGGCCGTGGACAGCGGCCGAGGATTCAATTCTGATGGAGTACGTGAAGAAACACGGCGAGGGGAACTGGAACGCCGTGCAGAAGAACTCGGGGCTGGCCAGGTGCGGCAAGAGCTGCAGGCTCCGGTGGGCTAACCACTTGAGGCCTAATCTCAAGAAAGGCTCTCTCACTGCAGAGGAGGAGCGAATGATCATCGAACTTCATGCCAAGTACGGCAACAAATGGGCTCGCATGGCTTCTCAGTTACCCGGTAGGACTGACAACGAGATAAAGAACTACTGGAACACAAGAATGAAGAGACGCCAGAGAGCCGGATTACCAATTTACCCTCACGAGCTTCAACATGAAGCCGCTGCTTCATTTCACCACCAACAAGCTCATCAGCAGCAGCAGAGGCATAACTCAAACTCGTCCTCTTCTTCATTTTCATCGCTCCTTTCCTCCTCGCATCCTCGAAAAGCAAATTACAGCTCTACCCCATCGCTCTCTCTTTATGACCACATCAGTTTTGATGCCTCTCTGCAGAACCACCACAACTCTCCTTCTCTTAATTACTCCAACTCAGCCATGACGACCCAGTTCAACGGTAACGGTGGCTTTGCTATCCCGCTATCTCCGGTTTCACCGGTTTCCCCATTTGGGTCATCGTCTTCAGCACTGTTCAACCAGACCAATATTCCAAACCAAACCCTTTTGCCAACTCCATCTCAATACTACAACTCAGGTCATGGAGGTTTTGGCAATTACAGTACTCTTAGCCTTAGCTCGATGATCATGGGGACTCCTACTTATGAGCCAATGAACTCGGAGCTCCCTTCGAACCAAACACCACCATACTCGCCATACACCCCTGCAAAACCTGCTTCTTCTGCTAACTTTAATGGCGGTGAGGGTCTGATGGAGGCTTCCGGCAACACCAATGGCTATGAGATTGAAACGGTAACCTCCCAAGGAAAGAGAGGCAGTGGTCTGCTGGATGATGTGTTGGTGCAAGCTGATGTAATATGTGGGAACAAGAGATCAAGGAGTGGAGACAGCTCATCCGGCGAGTCAGGGAAAGACAAATATATAGTTGAGGAGGAGGATGAGTCTGCTGGTCAGGAAGAGGAATCAACTTGGAAGAGCAGCGGTGACAATAGTGCTGAAAACCTAAGGGATGGTAGCTCTTCTCCGTCAGTTGGGATGAAACCAAGTGAGGATCCACTAGAGGATATGGATGATGACTTGTTAAGCCTGCTCAACTTCCAATCTGCAGCGCCAGAATCCGAGTCGTGGTACGGGGGAAGCATTTCTGACCAGGCATCACCAGGCATGAATGGTGCAAGTGACAATAATAATGTGAGTCTAGAAATTCGGCAAAACACATCGACATATGCATCCACGGTGAGCATGAGTGCAGCAGAACCTGATGATGAAGTTAAGGGCAGCCTTCCTCCATGCTTCTGGAACAACATGCCTGGCATCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010769 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042221 GO:0042995 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045595 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048638 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051510 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0060284 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0080092 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1900618 GO:1901363 GO:1901371 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905421 GO:1905957 GO:1905959 GO:1990019 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

527

Amino Acids

57.0

Weight (kDa)

5.46

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 38 - 85 1.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 41 - 101 7.7e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 91 - 134 1.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 95 - 138 2.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32460 AT2G32460
fragaria_vesca FvH4_6g43080
malus_domestica MD09G1109900.v1.1
prunus_persica Prupe.3G216600_v2.0.a1
pyrus_communis pycom09g03240
rosa_chinensis RchiOBHm_Chr2g0159111
rosa_laevigata RLG00000021138
rosa_multiflora Rmu_sc0013510.1_g000001
rosa_roxburghii Rroxscaffold_2G00090770
rosa_rugosa Rorug02G0474000.1 Rorug02G0474100
rosa_samantha Rh2AG540900 Rh2BG553800 Rh2CG523900 Rh2DG563400
rosa_wichuraiana Rw2G044750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 982
AciI CCGC 9 cut(s) 18, 53, 100, 128, 219, 465, 722, 999, 1242
AclWI GGATC 3 cut(s) 34, 1307, 1320
AcoI YGGCCR 2 cut(s) 129, 210
AcsI RAATTY 1 cut(s) 1464
AcuI CTGAAG 1 cut(s) 750
AcyI GRCGYC 1 cut(s) 415
AfaI GTAC 4 cut(s) 155, 326, 865, 1391
AfiI CCNNNNNNNGG 5 cut(s) 101, 102, 753, 1292, 1386
AgeI ACCGGT 1 cut(s) 739
AgsI TTSAA 7 cut(s) 40, 109, 141, 455, 697, 778, 1049
AjnI CCWGG 4 cut(s) 212, 1410, 1420, 1570
Alw21I GWGCWC 1 cut(s) 927
Alw26I GTCTC 2 cut(s) 406, 1140
AlwI GGATC 3 cut(s) 34, 1307, 1320
AlwNI CAGNNNCTG 2 cut(s) 97, 1520
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 5 cut(s) 75, 116, 129, 210, 257
ApaI GGGCCC 1 cut(s) 79
ApeKI GCWGC 9 cut(s) 56, 228, 467, 499, 502, 1239, 1367, 1511, 1539
ApoI RAATTY 1 cut(s) 1464
AsiGI ACCGGT 1 cut(s) 739
Asp700I GAANNNNTTC 1 cut(s) 1402
AspLEI GCGC 1 cut(s) 1372
AspS9I GGNCC 3 cut(s) 75, 76, 116
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 6 cut(s) 470, 729, 1013, 1256, 1410, 1510
AsuII TTCGAA 1 cut(s) 932
AvaI CYCGRG 1 cut(s) 202
AxyI CCTNAGG 1 cut(s) 1265
BaeGI GKGCMC 1 cut(s) 79
BalI TGGCCA 1 cut(s) 212
BamHI GGATCC 1 cut(s) 1312
BanII GRGCYC 3 cut(s) 79, 343, 927
BauI CACGAG 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 1 cut(s) 927
BbvI GCAGC 9 cut(s) 68, 215, 454, 511, 514, 1251, 1379, 1523, 1551
BccI CCATC 7 cut(s) 17, 40, 142, 601, 826, 1006, 1265
BceAI ACGGC 4 cut(s) 103, 173, 184, 343
BcgI CGANNNNNNTGC 4 cut(s) 32, 66, 299, 333
BciT130I CCWGG 4 cut(s) 214, 1412, 1422, 1572
BclI TGATCA 3 cut(s) 3, 303, 885
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 2 cut(s) 406, 1140
BfaI CTAG 2 cut(s) 1319, 1460
BfmI CTRYAG 4 cut(s) 229, 285, 635, 1365
BfoI RGCGCY 1 cut(s) 1373
BfuAI ACCTGC 1 cut(s) 982
BmcAI AGTACT 1 cut(s) 865
Bme1390I CCNGG 5 cut(s) 214, 363, 1412, 1422, 1572
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 3 cut(s) 75, 76, 116
BmiI GGNNCC 5 cut(s) 76, 77, 117, 236, 1314
BmrFI CCNGG 5 cut(s) 214, 363, 1412, 1422, 1572
BmrI ACTGGG 2 cut(s) 55, 685
BmsI GCATC 4 cut(s) 571, 616, 1424, 1499
BmuI ACTGGG 2 cut(s) 55, 685
BpiI GAAGAC 1 cut(s) 756
Bpu10I CCTNAGC 1 cut(s) 875
Bpu14I TTCGAA 1 cut(s) 932
BpuEI CTTGAG 2 cut(s) 251, 274
BpuMI CCSGG 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 415
BsaJI CCNNGG 4 cut(s) 119, 132, 1063, 1494
BsaWI WCCGGW 3 cut(s) 237, 730, 739
BsaXI ACNNNNNCTCC 2 cut(s) 1187, 1217
Bsc4I CCNNNNNNNGG 5 cut(s) 101, 102, 753, 1292, 1386
Bse118I RCCGGY 1 cut(s) 739
Bse1I ACTGG 4 cut(s) 61, 185, 398, 691
Bse21I CCTNAGG 1 cut(s) 1265
BseBI CCWGG 4 cut(s) 214, 1412, 1422, 1572
BseDI CCNNGG 4 cut(s) 119, 132, 1063, 1494
BseGI GGATG 8 cut(s) 562, 1096, 1154, 1204, 1276, 1302, 1336, 1490
BseLI CCNNNNNNNGG 5 cut(s) 101, 102, 753, 1292, 1386
BseMII CTCAG 3 cut(s) 368, 690, 849
BseNI ACTGG 4 cut(s) 61, 185, 398, 691
BseRI GAGGAG 5 cut(s) 305, 308, 547, 1205, 1208
BseSI GKGCMC 1 cut(s) 79
BseX3I CGGCCG 1 cut(s) 129
BseXI GCAGC 9 cut(s) 68, 215, 454, 511, 514, 1251, 1379, 1523, 1551
BsgI GTGCAG 2 cut(s) 212, 1530
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 5 cut(s) 77, 118, 131, 212, 259
BshTI ACCGGT 1 cut(s) 739
BsiEI CGRYCG 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 927
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 7 cut(s) 238, 363, 426, 731, 740, 1023, 1158
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 5 cut(s) 101, 102, 753, 1292, 1386
BsmAI GTCTC 2 cut(s) 406, 1140
BsmBI CGTCTC 1 cut(s) 406
BsmFI GGGAC 1 cut(s) 907
BsnI GGCC 5 cut(s) 77, 118, 131, 212, 259
BsoBI CYCGRG 1 cut(s) 202
Bsp119I TTCGAA 1 cut(s) 932
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 3 cut(s) 79, 343, 927
Bsp143I GATC 6 cut(s) 3, 26, 303, 885, 1133, 1312
BspACI CCGC 9 cut(s) 18, 53, 100, 128, 219, 465, 722, 999, 1242
BspANI GGCC 5 cut(s) 77, 118, 131, 212, 259
BspCNI CTCAG 3 cut(s) 367, 689, 848
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 5 cut(s) 76, 77, 117, 236, 1314
BspMAI CTGCAG 4 cut(s) 233, 289, 639, 1369
BspMI ACCTGC 1 cut(s) 982
BspPI GGATC 3 cut(s) 34, 1307, 1320
BspQI GCTCTTC 2 cut(s) 1229, 1285
BspT104I TTCGAA 1 cut(s) 932
BsrFI RCCGGY 1 cut(s) 739
BsrI ACTGG 4 cut(s) 61, 185, 398, 691
BssAI RCCGGY 1 cut(s) 739
BssECI CCNNGG 4 cut(s) 119, 132, 1063, 1494
BssMI GATC 6 cut(s) 3, 26, 303, 885, 1133, 1312
BssNI GRCGYC 1 cut(s) 415
BssSI CACGAG 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 1063
Bst2BI CACGAG 1 cut(s) 446
Bst2UI CCWGG 4 cut(s) 214, 1412, 1422, 1572
Bst4CI ACNGT 6 cut(s) 701, 707, 774, 863, 1054, 1498
Bst6I CTCTTC 5 cut(s) 404, 535, 1212, 1229, 1285
BstACI GRCGYC 1 cut(s) 415
BstAPI GCANNNNNTGC 2 cut(s) 228, 974
BstBAI YACGTR 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 932
BstC8I GCNNGC 5 cut(s) 210, 233, 343, 1107, 1349
BstDEI CTNAG 6 cut(s) 354, 676, 835, 869, 875, 1265
BstDSI CCRYGG 2 cut(s) 119, 1494
BstEII GGTNACC 1 cut(s) 1054
BstF5I GGATG 8 cut(s) 562, 1096, 1154, 1204, 1276, 1302, 1336, 1490
BstH2I RGCGCY 1 cut(s) 1373
BstHHI GCGC 1 cut(s) 1372
BstKTI GATC 6 cut(s) 6, 29, 306, 888, 1136, 1315
BstMAI GTCTC 2 cut(s) 406, 1140
BstMBI GATC 6 cut(s) 3, 26, 303, 885, 1133, 1312
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 8 cut(s) 91, 225, 228, 347, 508, 974, 983, 1158
BstNI CCWGG 4 cut(s) 214, 1412, 1422, 1572
BstNSI RCATGY 1 cut(s) 1570
BstPI GGTNACC 1 cut(s) 1054
BstSCI CCNGG 5 cut(s) 212, 361, 1410, 1420, 1570
BstSFI CTRYAG 4 cut(s) 229, 285, 635, 1365
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 9 cut(s) 68, 215, 454, 511, 514, 1251, 1379, 1523, 1551
BstV2I GAAGAC 1 cut(s) 756
BstX2I RGATCY 1 cut(s) 1312
BstXI CCANNNNNNTGG 1 cut(s) 1557
BstYI RGATCY 1 cut(s) 1312
BstZI CGGCCG 1 cut(s) 129
Bsu36I CCTNAGG 1 cut(s) 1265
BsuRI GGCC 5 cut(s) 77, 118, 131, 212, 259
BtgI CCRYGG 2 cut(s) 119, 1494
BtgZI GCGATG 2 cut(s) 528, 579
BtsCI GGATG 8 cut(s) 562, 1096, 1154, 1204, 1276, 1302, 1336, 1490
BtsI GCAGTG 2 cut(s) 282, 1084
BtsIMutI CAGTG 3 cut(s) 282, 770, 1084
BveI ACCTGC 1 cut(s) 982
Cac8I GCNNGC 5 cut(s) 210, 233, 343, 1107, 1349
CaiI CAGNNNCTG 2 cut(s) 97, 1520
CciI TCATGA 1 cut(s) 6
CfoI GCGC 1 cut(s) 1372
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 3 cut(s) 75, 76, 116
CseI GACGC 1 cut(s) 423
Csp6I GTAC 4 cut(s) 154, 325, 864, 1390
CspAI ACCGGT 1 cut(s) 739
CviQI GTAC 4 cut(s) 154, 325, 864, 1390
DdeI CTNAG 6 cut(s) 354, 676, 835, 869, 875, 1265
DpnI GATC 6 cut(s) 5, 28, 305, 887, 1135, 1314
DpnII GATC 6 cut(s) 3, 26, 303, 885, 1133, 1312
EaeI YGGCCR 2 cut(s) 129, 210
EagI CGGCCG 1 cut(s) 129
Eam1104I CTCTTC 5 cut(s) 404, 535, 1212, 1229, 1285
EarI CTCTTC 5 cut(s) 404, 535, 1212, 1229, 1285
Ecl136II GAGCTC 1 cut(s) 925
EclXI CGGCCG 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 1063
Eco147I AGGCCT 1 cut(s) 259
Eco24I GRGCYC 3 cut(s) 79, 343, 927
Eco52I CGGCCG 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 925
Eco57I CTGAAG 1 cut(s) 750
Eco81I CCTNAGG 1 cut(s) 1265
Eco88I CYCGRG 1 cut(s) 202
Eco91I GGTNACC 1 cut(s) 1054
EcoICRI GAGCTC 1 cut(s) 925
EcoO109I RGGNCCY 1 cut(s) 75
EcoO65I GGTNACC 1 cut(s) 1054
EcoRII CCWGG 4 cut(s) 212, 1410, 1420, 1570
EcoT14I CCWWGG 1 cut(s) 1063
EcoT22I ATGCAT 1 cut(s) 1492
EcoT38I GRGCYC 3 cut(s) 79, 343, 927
ErhI CCWWGG 1 cut(s) 1063
Esp3I CGTCTC 1 cut(s) 406
FaqI GGGAC 1 cut(s) 907
FauI CCCGC 2 cut(s) 93, 729
FauNDI CATATG 1 cut(s) 1486
FbaI TGATCA 3 cut(s) 3, 303, 885
FokI GGATG 8 cut(s) 549, 1103, 1141, 1211, 1283, 1309, 1343, 1477
FriOI GRGCYC 3 cut(s) 79, 343, 927
FspBI CTAG 2 cut(s) 1319, 1460
GlaI GCGC 1 cut(s) 1371
HaeII RGCGCY 1 cut(s) 1373
HaeIII GGCC 5 cut(s) 77, 118, 131, 212, 259
HapII CCGG 7 cut(s) 238, 363, 426, 731, 740, 1023, 1158
HgaI GACGC 1 cut(s) 423
HhaI GCGC 1 cut(s) 1372
Hin1I GRCGYC 1 cut(s) 415
Hin6I GCGC 1 cut(s) 1370
HinP1I GCGC 1 cut(s) 1370
HinfI GANTC 8 cut(s) 137, 895, 1163, 1202, 1223, 1376, 1382, 1456
HpaII CCGG 7 cut(s) 238, 363, 426, 731, 740, 1023, 1158
HphI GGTGA 6 cut(s) 470, 729, 1013, 1256, 1410, 1510
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 5 cut(s) 147, 922, 1011, 1381, 1408
Hpy188III TCNNGA 6 cut(s) 7, 268, 446, 1214, 1460, 1558
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 4 cut(s) 106, 666, 939, 1553
HpyCH4III ACNGT 6 cut(s) 701, 707, 774, 863, 1054, 1498
HpyCH4IV ACGT 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 8 cut(s) 91, 225, 228, 347, 508, 974, 983, 1158
HpyF3I CTNAG 6 cut(s) 354, 676, 835, 869, 875, 1265
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 415
HspAI GCGC 1 cut(s) 1370
Ksp22I TGATCA 3 cut(s) 3, 303, 885
Kzo9I GATC 6 cut(s) 3, 26, 303, 885, 1133, 1312
LguI GCTCTTC 2 cut(s) 1229, 1285
LmnI GCTCC 5 cut(s) 240, 295, 552, 922, 930
Lsp1109I GCAGC 9 cut(s) 68, 215, 454, 511, 514, 1251, 1379, 1523, 1551
LweI GCATC 4 cut(s) 571, 616, 1424, 1499
MaeI CTAG 2 cut(s) 1319, 1460
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 5 cut(s) 357, 701, 1054, 1244, 1439
MalI GATC 6 cut(s) 5, 28, 305, 887, 1135, 1314
MboI GATC 6 cut(s) 3, 26, 303, 885, 1133, 1312
MflI RGATCY 1 cut(s) 1312
MhlI GDGCHC 3 cut(s) 79, 343, 927
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 6 cut(s) 141, 435, 577, 664, 856, 1464
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 5 cut(s) 889, 1172, 1211, 1391, 1465
MmeI TCCRAC 1 cut(s) 696
Mox20I TGGCCA 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 1492
MroXI GAANNNNTTC 1 cut(s) 1402
MscI TGGCCA 1 cut(s) 212
MseI TTAA 4 cut(s) 663, 993, 1343, 1533
MslI CAYNNNNRTG 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 4 cut(s) 18, 128, 467, 1242
MspI CCGG 7 cut(s) 238, 363, 426, 731, 740, 1023, 1158
MspR9I CCNGG 5 cut(s) 214, 363, 1412, 1422, 1572
MvaI CCWGG 4 cut(s) 214, 1412, 1422, 1572
MwoI GCNNNNNNNGC 8 cut(s) 91, 225, 228, 347, 508, 974, 983, 1158
NciI CCSGG 1 cut(s) 363
NdeI CATATG 1 cut(s) 1486
NdeII GATC 6 cut(s) 3, 26, 303, 885, 1133, 1312
NlaIV GGNNCC 5 cut(s) 76, 77, 117, 236, 1314
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 2 cut(s) 1244, 1439
NsiI ATGCAT 1 cut(s) 1492
NspI RCATGY 1 cut(s) 1570
NspV TTCGAA 1 cut(s) 932
PagI TCATGA 1 cut(s) 6
PceI AGGCCT 1 cut(s) 259
PciSI GCTCTTC 2 cut(s) 1229, 1285
PdmI GAANNNNTTC 1 cut(s) 1402
PfeI GAWTC 3 cut(s) 137, 1223, 1376
PinAI ACCGGT 1 cut(s) 739
PleI GAGTC 5 cut(s) 889, 1171, 1210, 1390, 1464
PpsI GAGTC 5 cut(s) 889, 1171, 1210, 1390, 1464
Ppu21I YACGTR 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 927
Psp6I CCWGG 4 cut(s) 212, 1410, 1420, 1570
PspEI GGTNACC 1 cut(s) 1054
PspGI CCWGG 4 cut(s) 212, 1410, 1420, 1570
PspN4I GGNNCC 5 cut(s) 76, 77, 117, 236, 1314
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 3 cut(s) 75, 76, 116
PstI CTGCAG 4 cut(s) 233, 289, 639, 1369
PstNI CAGNNNCTG 2 cut(s) 97, 1520
PsuI RGATCY 1 cut(s) 1312
RsaI GTAC 4 cut(s) 155, 326, 865, 1391
RsaNI GTAC 4 cut(s) 154, 325, 864, 1390
RseI CAYNNNNRTG 1 cut(s) 404
SacI GAGCTC 1 cut(s) 927
SapI GCTCTTC 2 cut(s) 1229, 1285
SaqAI TTAA 4 cut(s) 663, 993, 1343, 1533
Sau3AI GATC 6 cut(s) 3, 26, 303, 885, 1133, 1312
Sau96I GGNCC 3 cut(s) 75, 76, 116
ScaI AGTACT 1 cut(s) 865
SchI GAGTC 5 cut(s) 889, 1172, 1211, 1391, 1465
ScrFI CCNGG 5 cut(s) 214, 363, 1412, 1422, 1572
SduI GDGCHC 3 cut(s) 79, 343, 927
SfaNI GCATC 4 cut(s) 571, 616, 1424, 1499
SfcI CTRYAG 4 cut(s) 229, 285, 635, 1365
SfuI TTCGAA 1 cut(s) 932
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 253, 266
SmoI CTYRAG 2 cut(s) 253, 266
Sse9I AATT 6 cut(s) 141, 435, 577, 664, 856, 1464
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 9 cut(s) 18, 53, 100, 128, 219, 465, 722, 999, 1242
SspI AATATT 1 cut(s) 790
SspMI CTAG 2 cut(s) 1319, 1460
SstI GAGCTC 1 cut(s) 927
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 5 cut(s) 212, 361, 1410, 1420, 1570
StyI CCWWGG 1 cut(s) 1063
TaaI ACNGT 6 cut(s) 701, 707, 774, 863, 1054, 1498
TaiI ACGT 1 cut(s) 159
TaqI TCGA 5 cut(s) 309, 568, 881, 932, 1481
TasI AATT 6 cut(s) 141, 435, 577, 664, 856, 1464
TatI WGTACW 1 cut(s) 863
TauI GCSGC 4 cut(s) 56, 131, 222, 467
TfiI GAWTC 3 cut(s) 137, 1223, 1376
Tru1I TTAA 4 cut(s) 663, 993, 1343, 1533
Tru9I TTAA 4 cut(s) 663, 993, 1343, 1533
TscAI CASTG 3 cut(s) 289, 777, 1084
TseFI GTSAC 2 cut(s) 1244, 1439
TseI GCWGC 9 cut(s) 56, 228, 467, 499, 502, 1239, 1367, 1511, 1539
Tsp45I GTSAC 2 cut(s) 1244, 1439
TspGWI ACGGA 1 cut(s) 1275
TspRI CASTG 3 cut(s) 289, 777, 1084
XapI RAATTY 1 cut(s) 1464
XbaI TCTAGA 1 cut(s) 1459
XceI RCATGY 1 cut(s) 1570
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 1402
XspI CTAG 2 cut(s) 1319, 1460
ZrmI AGTACT 1 cut(s) 865
Zsp2I ATGCAT 1 cut(s) 1492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.