AT2G33040

ATP synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011242
Physical Location & Seq
Reverse (-)
14018610 .. 14021185
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33040.1

Sequence Viewer

Length: 978 bp
ATGGCAATGGCTGTTTTCCGTCGCGAAGGGAGGCGTCTCCTCCCTTCAATCGCCGCTCGCCCAATCGCTGCTATCCGATCTCCTCTCTCTTCTGACCAGGAGGAAGGACTTCTTGGAGTTCGATCTATCTCAACTCAAGTGGTGCGTAACCGCATGAAGAGTGTTAAGAACATCCAAAAGATCACAAAGGCAATGAAGATGGTTGCTGCTTCCAAGCTTAGAGCAGTTCAAGGCCGAGCTGAGAACTCCCGTGGACTTTGGCAGCCATTTACTGCACTTCTAGGAGATAATCCCAGCATTGATGTAAAGAAGAGTGTGGTGGTCACTCTCTCTTCTGACAAGGGTCTCTGTGGTGGAATCAACTCCACTGTCGTTAAAGTGAGCAGGGCTCTGTACAAATTGAATGCTGGTCCTGAAAAGGAAGTTCAGTTTGTTATTGTCGGAGAGAAAGCAAAGGCTATAATGTTTCGTGACTCAAAGAACGACATTGTCCTCTCTGTAACAGAGCTGAATAAGAACCCACTCAATTATGCTCAGGTGTCAGTTCTAGCTGATGACATCCTGAAGAACGTTGAATTTGATGCTTTGCGCATTGTCTACAACAAGTTCCATTCAGTTGTCGCATTTCTGCCAACTGTGTCCACTGTTTTGTCACCTGAGATTATTGAGAAGGAGTCTGAAATTGGAGGAAAACTTGGCGAGCTTGACTCATATGAGATTGAAGGTGGGGAAACAAAGGGAGAAATATTGCAGAATCTGGCCGAGTTCCAATTCTCTTGTGTGATGTTCAATGCGGTTCTGGAGAATGCATGTAGTGAGATGGGAGCAAGAATGTCTGCCATGGACAGCTCAAGCAGAAACGCAGGAGAAATGCTCGACCGTCTCACCCTCACATACAACAGGACTCGTCAAGCTTCTATTACAACAGAGCTTATTGAGATTATCTCTGGAGCTTCTGCTCTTGAAGCTGCTAAATAA

Protein Analysis

325

Amino Acids

35.45

Weight (kDa)

9.01

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 45 - 321 5.1e-77 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33040
fragaria_vesca FvH4_5g13860 FvH4_5g13860 FvH4_5g13860
malus_domestica MD06G1202600.v1.1 MD14G1211800.v1.1
prunus_persica Prupe.5G204800_v2.0.a1
pyrus_communis pycom06g17860 pycom14g17540
rosa_chinensis RchiOBHm_Chr7g0183071
rosa_laevigata RLG00000005081
rosa_multiflora Rmu_ssc0000111.1_g000004
rosa_roxburghii Rroxscaffold_3G00270790
rosa_rugosa Rorug06G0452400 Rorug06G0452500
rosa_samantha Rh7AG055800 Rh7BG055100 Rh7CG056600 Rh7DG055300
rosa_wichuraiana Rw7G004540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 590
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 597
AccII CGCG 1 cut(s) 24
AciI CCGC 3 cut(s) 54, 151, 794
AclI AACGTT 1 cut(s) 570
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 34
AfaI GTAC 1 cut(s) 395
AgsI TTSAA 7 cut(s) 48, 230, 403, 575, 722, 790, 965
AjnI CCWGG 1 cut(s) 96
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
Alw26I GTCTC 3 cut(s) 41, 350, 887
AlwNI CAGNNNCTG 1 cut(s) 757
AoxI GGCC 2 cut(s) 232, 759
ApeKI GCWGC 4 cut(s) 68, 206, 262, 968
ApoI RAATTY 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 645, 877
AvaII GGWCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 391
BbvI GCAGC 4 cut(s) 55, 193, 274, 955
BccI CCATC 2 cut(s) 193, 814
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 3 cut(s) 41, 350, 887
BfaI CTAG 2 cut(s) 281, 548
BisI GCNGC 5 cut(s) 54, 69, 207, 263, 969
BlsI GCNGC 5 cut(s) 55, 70, 208, 264, 970
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 571
BoxI GACNNNNGTC 1 cut(s) 342
BplI GAGNNNNNCTC 8 cut(s) 373, 405, 692, 724, 858, 890, 929, 961
BpmI CTGGAG 2 cut(s) 821, 969
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 2 cut(s) 120, 835
BsaHI GRCGYC 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 250, 840
Bse3DI GCAATG 2 cut(s) 12, 198
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 250, 840
BseGI GGATG 2 cut(s) 171, 558
BseMI GCAATG 2 cut(s) 12, 198
BseMII CTCAG 3 cut(s) 231, 548, 648
BseRI GAGGAG 2 cut(s) 29, 72
BseXI GCAGC 4 cut(s) 55, 193, 274, 955
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 24
Bsh1285I CGRYCG 1 cut(s) 880
BshFI GGCC 2 cut(s) 234, 761
BsiEI CGRYCG 1 cut(s) 880
BsmAI GTCTC 3 cut(s) 41, 350, 887
BsmBI CGTCTC 2 cut(s) 41, 887
BsmI GAATGC 2 cut(s) 409, 811
BsnI GGCC 2 cut(s) 234, 761
Bso31I GGTCTC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 391
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 3 cut(s) 77, 122, 180
Bsp19I CCATGG 1 cut(s) 840
Bsp68I TCGCGA 1 cut(s) 24
BspACI CCGC 3 cut(s) 54, 151, 794
BspANI GGCC 2 cut(s) 234, 761
BspCNI CTCAG 3 cut(s) 232, 547, 649
BspFNI CGCG 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 56
BsrDI GCAATG 2 cut(s) 12, 198
BsrGI TGTACA 1 cut(s) 393
BssECI CCNNGG 2 cut(s) 250, 840
BssMI GATC 3 cut(s) 77, 122, 180
BssNI GRCGYC 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 840
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 4 cut(s) 370, 637, 646, 881
Bst6I CTCTTC 4 cut(s) 94, 152, 305, 337
BstACI GRCGYC 1 cut(s) 34
BstAUI TGTACA 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 58, 701
BstDEI CTNAG 4 cut(s) 218, 240, 534, 657
BstDSI CCRYGG 2 cut(s) 250, 840
BstF5I GGATG 2 cut(s) 171, 558
BstFNI CGCG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 3 cut(s) 80, 125, 183
BstMAI GTCTC 3 cut(s) 41, 350, 887
BstMBI GATC 3 cut(s) 77, 122, 180
BstMCI CGRYCG 1 cut(s) 880
BstMWI GCNNNNNNNGC 1 cut(s) 965
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 813
BstPAI GACNNNNGTC 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 96
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 4 cut(s) 55, 193, 274, 955
BsuRI GGCC 2 cut(s) 234, 761
BtgI CCRYGG 2 cut(s) 250, 840
BtsCI GGATG 2 cut(s) 171, 558
BtsIMutI CAGTG 2 cut(s) 366, 642
BtuMI TCGCGA 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 58, 701
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 1 cut(s) 591
Cfr13I GGNCC 1 cut(s) 410
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 394
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 3 cut(s) 154, 810, 841
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 4 cut(s) 218, 240, 534, 657
DpnI GATC 3 cut(s) 79, 124, 182
DpnII GATC 3 cut(s) 77, 122, 180
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 4 cut(s) 94, 152, 305, 337
EarI CTCTTC 4 cut(s) 94, 152, 305, 337
Eco130I CCWWGG 1 cut(s) 840
Eco24I GRGCYC 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 584
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 840
EcoT22I ATGCAT 1 cut(s) 811
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 840
Esp3I CGTCTC 2 cut(s) 41, 887
FaeI CATG 3 cut(s) 157, 813, 844
FaiI YATR 8 cut(s) 155, 461, 531, 712, 714, 811, 842, 895
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 3 cut(s) 153, 809, 840
FauNDI CATATG 1 cut(s) 712
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 5 cut(s) 54, 69, 207, 263, 969
FokI GGATG 2 cut(s) 158, 545
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 5 cut(s) 54, 69, 207, 263, 969
FspBI CTAG 2 cut(s) 281, 548
FspI TGCGCA 1 cut(s) 590
GlaI GCGC 1 cut(s) 590
GluI GCNGC 5 cut(s) 54, 69, 207, 263, 969
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 2 cut(s) 821, 969
HaeIII GGCC 2 cut(s) 234, 761
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 591
Hin1I GRCGYC 1 cut(s) 34
Hin1II CATG 3 cut(s) 157, 813, 844
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HindIII AAGCTT 2 cut(s) 215, 912
HinfI GANTC 6 cut(s) 357, 473, 674, 707, 754, 904
HphI GGTGA 2 cut(s) 645, 877
Hpy166II GTNNAC 3 cut(s) 254, 598, 642
Hpy188I TCNGA 5 cut(s) 77, 94, 337, 443, 679
Hpy188III TCNNGA 7 cut(s) 23, 413, 470, 562, 800, 948, 962
Hpy8I GTNNAC 3 cut(s) 254, 598, 642
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 5 cut(s) 20, 54, 98, 664, 716
HpyCH4III ACNGT 4 cut(s) 370, 637, 646, 881
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 3 cut(s) 275, 751, 809
HpyF10VI GCNNNNNNNGC 1 cut(s) 965
HpyF3I CTNAG 4 cut(s) 218, 240, 534, 657
HpySE526I ACGT 1 cut(s) 570
Hsp92I GRCGYC 1 cut(s) 34
Hsp92II CATG 3 cut(s) 157, 813, 844
HspAI GCGC 1 cut(s) 589
Kzo9I GATC 3 cut(s) 77, 122, 180
LmnI GCTCC 2 cut(s) 824, 950
Lsp1109I GCAGC 4 cut(s) 55, 193, 274, 955
LweI GCATC 1 cut(s) 571
MaeI CTAG 2 cut(s) 281, 548
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 5 cut(s) 146, 322, 470, 499, 651
MalI GATC 3 cut(s) 79, 124, 182
MbiI CCGCTC 1 cut(s) 56
MboI GATC 3 cut(s) 77, 122, 180
MboII GAAGA 6 cut(s) 81, 169, 208, 322, 324, 577
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 5 cut(s) 398, 526, 575, 681, 770
MlyI GAGTC 4 cut(s) 467, 683, 701, 898
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 7 cut(s) 24, 50, 93, 94, 503, 680, 899
Mph1103I ATGCAT 1 cut(s) 811
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 2 cut(s) 165, 375
MspR9I CCNGG 1 cut(s) 98
Mva1269I GAATGC 2 cut(s) 409, 811
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 965
NcoI CCATGG 1 cut(s) 840
NdeI CATATG 1 cut(s) 712
NdeII GATC 3 cut(s) 77, 122, 180
NlaIII CATG 3 cut(s) 157, 813, 844
NmeAIII GCCGAG 2 cut(s) 260, 787
NmuCI GTSAC 3 cut(s) 322, 470, 651
NruI TCGCGA 1 cut(s) 24
NsbI TGCGCA 1 cut(s) 590
NsiI ATGCAT 1 cut(s) 811
NspI RCATGY 1 cut(s) 813
PctI GAATGC 2 cut(s) 409, 811
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 357, 754
PflFI GACNNNGTC 1 cut(s) 488
PkrI GCNGC 5 cut(s) 55, 70, 208, 264, 970
PleI GAGTC 4 cut(s) 467, 682, 701, 898
PpsI GAGTC 4 cut(s) 467, 682, 701, 898
PshAI GACNNNNGTC 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 1 cut(s) 410
PstNI CAGNNNCTG 1 cut(s) 757
PsyI GACNNNGTC 1 cut(s) 488
RruI TCGCGA 1 cut(s) 24
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SaqAI TTAA 2 cut(s) 165, 375
SatI GCNGC 5 cut(s) 54, 69, 207, 263, 969
Sau3AI GATC 3 cut(s) 77, 122, 180
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 4 cut(s) 467, 683, 701, 898
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 391
SfaNI GCATC 1 cut(s) 571
SinI GGWCC 1 cut(s) 410
SmlI CTYRAG 2 cut(s) 135, 850
SmoI CTYRAG 2 cut(s) 135, 850
Sse9I AATT 5 cut(s) 398, 526, 575, 681, 770
SsiI CCGC 3 cut(s) 54, 151, 794
SspI AATATT 1 cut(s) 747
SspMI CTAG 2 cut(s) 281, 548
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 4 cut(s) 370, 637, 646, 881
TaiI ACGT 1 cut(s) 573
TaqI TCGA 2 cut(s) 121, 876
TasI AATT 5 cut(s) 398, 526, 575, 681, 770
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 357, 754
Tru1I TTAA 2 cut(s) 165, 375
Tru9I TTAA 2 cut(s) 165, 375
TscAI CASTG 2 cut(s) 373, 649
TseFI GTSAC 3 cut(s) 322, 470, 651
TseI GCWGC 4 cut(s) 68, 206, 262, 968
Tsp45I GTSAC 3 cut(s) 322, 470, 651
TspDTI ATGAA 2 cut(s) 170, 209
TspGWI ACGGA 1 cut(s) 8
TspRI CASTG 2 cut(s) 373, 649
Tth111I GACNNNGTC 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 575
XceI RCATGY 1 cut(s) 813
XmiI GTMKAC 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 2 cut(s) 281, 548
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.