RchiOBHm_Chr7g0183071

ATP synthase subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011242
Physical Location & Seq
Forward (+)
4117111 .. 4120836
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16331

Sequence Viewer

Length: 966 bp
ATGGCCATGGCTGTTCTCAGACGAGAAGGGAGGCGTTTCGCCATCTCCCCCAATCCAATCGCCGCCGTCCGATCCTCCATCTTCCCCGCCGAGGAGCAGGCCCCTCTGGGAGTACGCTCAATTTCAACTCAAATCGTGAGAAACCGGATGAAGAGTGTTAAGAGTATCCAAAAAATTACAAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTGCGAGCAATTCAATCCAAAGCTGAAAATTCTCGTGGCCTGTGGCAGCCTTTCACAGCACTTCTTGGCGACACCCCCAGTGTCGAAGTTAAGAAGGATGTTATTGTTACCATCTCTTCAGACAAAGGTTTATGTGGTGGAATCAACTCTACTTCAGTCAAAATAAGCAAGGCATTGAACAAGTTGAATGCTGGTCCTGACAAAGAAACAAAATATGTAATTTTGGGGGAAAAAGCAAAAGCTCAATTGATTCGTGACTCAAAGAAGGACATTGAGCTAAACATAACTGAGTTGCAGAAGAATCCTTTGAACTACGCCCAGGTATCTGTCATAGCTGACGACATTTTAAAAAATGTTGAATACGATGCTTTGAGAGTTGTCTTCAACAAATTTCAGTCAGTCGTCGCATTTCTGCCAACTGTTTCTACTGTATTATCTCCAGAGGTTGTGGAGAAAGAGTCTGAAGCTGGTGGAAAGCTTGGTGACCTAGATTCGTATGAGGTTGAAGGTGGCGAGACAAAGTCAGAAATTCTACAGAATCTGACAGAGTTCCAATTTTCTTGTGTCTTGTTCAATGGGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCCAGGATGTCTGCCATGGACAGCTCAAGCAGAAATGCCGGAGAGATGCTTGATCGCCTCACACTCTCTTACAACAGAACCCGTCAAGCATCTATCACCACAGAATTGATCGAGATTATATCTGGAGCATCAGCACTGGAGGGCTAG

Protein Analysis

321

Amino Acids

34.93

Weight (kDa)

8.81

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 44 - 319 6.8e-75 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33040
fragaria_vesca FvH4_5g13860 FvH4_5g13860 FvH4_5g13860
malus_domestica MD06G1202600.v1.1 MD14G1211800.v1.1
prunus_persica Prupe.5G204800_v2.0.a1
pyrus_communis pycom06g17860 pycom14g17540
rosa_chinensis RchiOBHm_Chr7g0183071
rosa_laevigata RLG00000005081
rosa_multiflora Rmu_ssc0000111.1_g000004
rosa_roxburghii Rroxscaffold_3G00270790
rosa_rugosa Rorug06G0452400 Rorug06G0452500
rosa_samantha Rh7AG055800 Rh7BG055100 Rh7CG056600 Rh7DG055300
rosa_wichuraiana Rw7G004540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 63, 87
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 238, 599, 738
AcuI CTGAAG 3 cut(s) 312, 348, 693
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 9 cut(s) 126, 224, 388, 397, 520, 569, 595, 716, 784
AjnI CCWGG 2 cut(s) 528, 821
AluBI AGCT 8 cut(s) 211, 233, 452, 487, 545, 677, 688, 843
AluI AGCT 8 cut(s) 211, 233, 452, 487, 545, 677, 688, 843
Alw26I GTCTC 1 cut(s) 719
AlwI GGATC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 751
AoxI GGCC 3 cut(s) 3, 99, 247
ApeKI GCWGC 3 cut(s) 200, 211, 256
ApoI RAATTY 3 cut(s) 238, 599, 738
AspS9I GGNCC 2 cut(s) 100, 404
AsuHPI GGTGA 2 cut(s) 704, 907
AvaII GGWCC 1 cut(s) 404
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 583
BbvI GCAGC 3 cut(s) 198, 212, 268
BccI CCATC 4 cut(s) 50, 86, 187, 329
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 530, 823
BciVI GTATCC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 719
BfaI CTAG 2 cut(s) 698, 964
BfmI CTRYAG 1 cut(s) 743
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 4 cut(s) 63, 201, 212, 257
BlsI GCNGC 4 cut(s) 64, 202, 213, 258
Bme1390I CCNGG 2 cut(s) 530, 823
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 2 cut(s) 100, 404
BmiI GGNNCC 2 cut(s) 102, 820
BmrFI CCNGG 2 cut(s) 530, 823
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 4 cut(s) 565, 855, 917, 956
BmuI ACTGGG 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 583
BpmI CTGGAG 2 cut(s) 633, 963
BpuEI CTTGAG 1 cut(s) 829
BsaJI CCNNGG 4 cut(s) 6, 90, 528, 834
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 288, 960
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 2 cut(s) 530, 823
BseDI CCNNGG 4 cut(s) 6, 90, 528, 834
BseGI GGATG 3 cut(s) 153, 313, 831
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 2 cut(s) 31, 489
BseNI ACTGG 2 cut(s) 288, 960
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 198, 212, 268
BshFI GGCC 3 cut(s) 5, 101, 249
BsiSI CCGG 2 cut(s) 145, 858
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 719
BsmI GAATGC 2 cut(s) 403, 805
BsnI GGCC 3 cut(s) 5, 101, 249
Bsp143I GATC 3 cut(s) 71, 871, 927
Bsp19I CCATGG 2 cut(s) 6, 834
BspACI CCGC 2 cut(s) 63, 87
BspANI GGCC 3 cut(s) 5, 101, 249
BspCNI CTCAG 2 cut(s) 30, 490
BspLI GGNNCC 2 cut(s) 102, 820
BspPI GGATC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 2 cut(s) 288, 960
BssECI CCNNGG 4 cut(s) 6, 90, 528, 834
BssMI GATC 3 cut(s) 71, 871, 927
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 2 cut(s) 6, 834
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 2 cut(s) 530, 823
Bst4CI ACNGT 2 cut(s) 631, 640
Bst6I CTCTTC 2 cut(s) 146, 331
BstC8I GCNNGC 3 cut(s) 99, 216, 805
BstDEI CTNAG 2 cut(s) 17, 498
BstDSI CCRYGG 2 cut(s) 6, 834
BstEII GGTNACC 1 cut(s) 692
BstF5I GGATG 3 cut(s) 153, 313, 831
BstKTI GATC 3 cut(s) 74, 874, 930
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 3 cut(s) 71, 871, 927
BstNI CCWGG 2 cut(s) 530, 823
BstPI GGTNACC 1 cut(s) 692
BstSCI CCNGG 2 cut(s) 528, 821
BstSFI CTRYAG 1 cut(s) 743
BstV1I GCAGC 3 cut(s) 198, 212, 268
BstV2I GAAGAC 1 cut(s) 583
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 3 cut(s) 5, 101, 249
BtgI CCRYGG 2 cut(s) 6, 834
BtsCI GGATG 3 cut(s) 153, 313, 831
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 3 cut(s) 295, 814, 953
Cac8I GCNNGC 3 cut(s) 99, 216, 805
CaiI CAGNNNCTG 1 cut(s) 751
Cfr13I GGNCC 2 cut(s) 100, 404
Csp6I GTAC 1 cut(s) 113
CviAII CATG 2 cut(s) 7, 835
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 17, 498
DpnI GATC 3 cut(s) 73, 873, 929
DpnII GATC 3 cut(s) 71, 871, 927
DraI TTTAAA 1 cut(s) 558
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 146, 331
EarI CTCTTC 2 cut(s) 146, 331
Eco130I CCWWGG 2 cut(s) 6, 834
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 3 cut(s) 312, 348, 693
Eco91I GGTNACC 1 cut(s) 692
EcoO109I RGGNCCY 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 692
EcoRII CCWGG 2 cut(s) 528, 821
EcoT14I CCWWGG 2 cut(s) 6, 834
ErhI CCWWGG 2 cut(s) 6, 834
FaeI CATG 2 cut(s) 10, 838
FaiI YATR 8 cut(s) 8, 343, 426, 494, 542, 708, 836, 938
FatI CATG 2 cut(s) 6, 834
FauI CCCGC 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 63, 201, 212, 257
FokI GGATG 3 cut(s) 160, 320, 838
Fsp4HI GCNGC 4 cut(s) 63, 201, 212, 257
FspBI CTAG 2 cut(s) 698, 964
GluI GCNGC 4 cut(s) 63, 201, 212, 257
GsuI CTGGAG 2 cut(s) 633, 963
HaeIII GGCC 3 cut(s) 5, 101, 249
HapII CCGG 2 cut(s) 145, 858
Hin1II CATG 2 cut(s) 10, 838
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 7 cut(s) 351, 460, 467, 511, 668, 701, 748
HpaII CCGG 2 cut(s) 145, 858
HphI GGTGA 2 cut(s) 704, 907
Hpy188I TCNGA 6 cut(s) 20, 71, 331, 673, 736, 753
Hpy188III TCNNGA 6 cut(s) 136, 407, 464, 650, 931, 942
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 4 cut(s) 20, 298, 469, 710
HpyCH4III ACNGT 2 cut(s) 631, 640
HpyCH4V TGCA 3 cut(s) 200, 505, 807
HpyF3I CTNAG 2 cut(s) 17, 498
Hsp92II CATG 2 cut(s) 10, 838
Kzo9I GATC 3 cut(s) 71, 871, 927
LmnI GCTCC 3 cut(s) 94, 818, 944
Lsp1109I GCAGC 3 cut(s) 198, 212, 268
LweI GCATC 4 cut(s) 565, 855, 917, 956
MaeI CTAG 2 cut(s) 698, 964
MaeIII GTNAC 3 cut(s) 316, 464, 692
MalI GATC 3 cut(s) 73, 873, 929
MboI GATC 3 cut(s) 71, 871, 927
MboII GAAGA 6 cut(s) 73, 163, 202, 318, 520, 583
MfeI CAATTG 1 cut(s) 455
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 461, 677
MmeI TCCRAC 1 cut(s) 774
MnlI CCTC 9 cut(s) 24, 85, 85, 114, 214, 646, 703, 887, 952
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 159, 300, 557
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 145, 858
MspR9I CCNGG 2 cut(s) 530, 823
MunI CAATTG 1 cut(s) 455
Mva1269I GAATGC 2 cut(s) 403, 805
MvaI CCWGG 2 cut(s) 530, 823
NcoI CCATGG 2 cut(s) 6, 834
NdeII GATC 3 cut(s) 71, 871, 927
NlaIII CATG 2 cut(s) 10, 838
NlaIV GGNNCC 2 cut(s) 102, 820
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 2 cut(s) 464, 692
PctI GAATGC 2 cut(s) 403, 805
PfeI GAWTC 5 cut(s) 351, 460, 511, 701, 748
PflFI GACNNNGTC 1 cut(s) 730
PkrI GCNGC 4 cut(s) 64, 202, 213, 258
PleI GAGTC 2 cut(s) 461, 676
PpsI GAGTC 2 cut(s) 461, 676
Psp6I CCWGG 2 cut(s) 528, 821
PspEI GGTNACC 1 cut(s) 692
PspGI CCWGG 2 cut(s) 528, 821
PspN4I GGNNCC 2 cut(s) 102, 820
PspPI GGNCC 2 cut(s) 100, 404
PstNI CAGNNNCTG 1 cut(s) 751
PsyI GACNNNGTC 1 cut(s) 730
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 159, 300, 557
SatI GCNGC 4 cut(s) 63, 201, 212, 257
Sau3AI GATC 3 cut(s) 71, 871, 927
Sau96I GGNCC 2 cut(s) 100, 404
SchI GAGTC 2 cut(s) 461, 677
ScrFI CCNGG 2 cut(s) 530, 823
SfaNI GCATC 4 cut(s) 565, 855, 917, 956
SfcI CTRYAG 1 cut(s) 743
SinI GGWCC 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 844
SmoI CTYRAG 1 cut(s) 844
SsiI CCGC 2 cut(s) 63, 87
SspMI CTAG 2 cut(s) 698, 964
StyD4I CCNGG 2 cut(s) 528, 821
StyI CCWWGG 2 cut(s) 6, 834
TaaI ACNGT 2 cut(s) 631, 640
TaqI TCGA 2 cut(s) 294, 930
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 5 cut(s) 351, 460, 511, 701, 748
Tru1I TTAA 3 cut(s) 159, 300, 557
Tru9I TTAA 3 cut(s) 159, 300, 557
TscAI CASTG 3 cut(s) 295, 814, 960
TseFI GTSAC 2 cut(s) 464, 692
TseI GCWGC 3 cut(s) 200, 211, 256
Tsp45I GTSAC 2 cut(s) 464, 692
TspDTI ATGAA 2 cut(s) 164, 203
TspRI CASTG 3 cut(s) 295, 814, 960
Tth111I GACNNNGTC 1 cut(s) 730
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 3 cut(s) 238, 599, 738
XspI CTAG 2 cut(s) 698, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.