Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011242

Physical Location & Seq

Genomic Coordinates Reverse (-)

29695070 .. 29698775

Gene Structure 3706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1211800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGATGGCTGCTCTCAGACGAGAAGGGAGGCGTTTCACCCCTTTGATCTCTCCCCATCCGATGGCCGCCGTCCGATCCTCCATCATCACAGCCGAGGAGCAGGTACCTTTGGGAGTGCGCTCAATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTGAAGAATATCCAGAAAATCACAAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTTCGAGCAATTCAAGTTAAAGCTGAAAATTCTCGTGGCCTGTGGCAGCCTTTCACAGCACTTCTTGGCGACACTCCCAGCGTCAGCGTTAAGAAGGATGTTATTGTTACCATCTCTTCAGACAAAGGTTTATGTGGTGGAATTAACTCTACCTCAGTCAAGATAAGCAAGGCCGTGCACAAGTTGAATGCTGGTCCTGAAAAAGAGACAAAATATGTCATTTTGGGGGAAAAAGCAAAGGCTCAGTTGATTCGTGACTCTAAGAAGGACATTGAGCTATGTATAACTGAGTTGCAGAAGAATCCTTTGAACTACACCCAGGTATCTGTCATTGCTGATGACATTTTGAAAAATGTTGAGTTTGATGCTTTGAGAATCGTCTTCAACAAGTTTCAGTCAGTCGTCTCATTTCTGCCAACTGTGTCAACAGTATTATCTCCCGAGATTGTGGAGAGAGAATCTGAAGCTGGTGGAAAGCTTGGTGACTTAGATTCCTATGAGATTGAAGGTGGTGAGACAAAGTCGGAGATACTTCAGAATTTGGCAGAGTTCCAATTTTCATGTGTCATGTTCAATGCAGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCAAGCAGAAATGCCGGAGAGATGCTTGATCGCCTCACACTCACTTATAACAGAACTCGTCAAGCATCTATTACCACCGAATTGATTGAGATTATATCAGGAGCATCAGCACTGGAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt

Protein Analysis

324

Amino Acids

35.31

Weight (kDa)

8.92

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt	PF00231	46 - 321	4.4e-75	ATP synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33040
fragaria_vesca	FvH4_5g13860 FvH4_5g13860 FvH4_5g13860
malus_domestica	MD06G1202600.v1.1 MD14G1211800.v1.1
prunus_persica	Prupe.5G204800_v2.0.a1
pyrus_communis	pycom06g17860 pycom14g17540
rosa_chinensis	RchiOBHm_Chr7g0183071
rosa_laevigata	RLG00000005081
rosa_multiflora	Rmu_ssc0000111.1_g000004
rosa_roxburghii	Rroxscaffold_3G00270790
rosa_rugosa	Rorug06G0452400 Rorug06G0452500
rosa_samantha	Rh7AG055800 Rh7BG055100 Rh7CG056600 Rh7DG055300
rosa_wichuraiana	Rw7G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	897
Acc36I	ACCTGC	1 cut(s)	94
Acc65I	GGTACC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	64
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	244, 754
AcuI	CTGAAG	3 cut(s)	318, 699, 734
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	8 cut(s)	132, 230, 403, 526, 565, 601, 722, 790
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	6 cut(s)	217, 239, 493, 683, 694, 849
AluI	AGCT	6 cut(s)	217, 239, 493, 683, 694, 849
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	3 cut(s)	416, 625, 725
Alw44I	GTGCAC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	3 cut(s)	66, 253, 387
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	11, 206, 262
ApoI	RAATTY	2 cut(s)	244, 754
Asp718I	GGTACC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	3 cut(s)	31, 710, 740
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	396
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BanI	GGYRCC	1 cut(s)	106
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	218, 274
BccI	CCATC	5 cut(s)	58, 66, 92, 193, 335
BceAI	ACGGC	2 cut(s)	56, 374
BciT130I	CCWGG	1 cut(s)	536
BcoDI	GTCTC	3 cut(s)	416, 625, 725
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	4 cut(s)	12, 69, 207, 263
BlsI	GCNGC	4 cut(s)	13, 70, 208, 264
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	4 cut(s)	571, 861, 923, 962
BpiI	GAAGAC	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	835
BsaJI	CCNNGG	3 cut(s)	96, 534, 840
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	966
Bse3DI	GCAATG	2 cut(s)	198, 546
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	3 cut(s)	96, 534, 840
BseGI	GGATG	4 cut(s)	58, 159, 319, 837
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	2 cut(s)	198, 546
BseMII	CTCAG	4 cut(s)	31, 384, 473, 495
BseNI	ACTGG	1 cut(s)	966
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	218, 274
BseYI	CCCAGC	1 cut(s)	293
BshFI	GGCC	3 cut(s)	68, 255, 389
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	151, 864
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	3 cut(s)	416, 625, 725
BsmBI	CGTCTC	1 cut(s)	625
BsmI	GAATGC	2 cut(s)	409, 811
BsnI	GGCC	3 cut(s)	68, 255, 389
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	48, 77, 877
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	3 cut(s)	68, 255, 389
BspCNI	CTCAG	4 cut(s)	30, 383, 472, 496
BspLI	GGNNCC	1 cut(s)	108
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	2 cut(s)	198, 546
BsrI	ACTGG	1 cut(s)	966
BssECI	CCNNGG	3 cut(s)	96, 534, 840
BssMI	GATC	3 cut(s)	48, 77, 877
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	840
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	637, 646
Bst6I	CTCTTC	2 cut(s)	152, 337
BstC8I	GCNNGC	1 cut(s)	811
BstDEI	CTNAG	6 cut(s)	17, 370, 459, 477, 504, 703
BstDSI	CCRYGG	1 cut(s)	840
BstF5I	GGATG	4 cut(s)	58, 159, 319, 837
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	51, 80, 880
BstMAI	GTCTC	3 cut(s)	416, 625, 725
BstMBI	GATC	3 cut(s)	48, 77, 877
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	218, 274
BstV2I	GAAGAC	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	68, 255, 389
BtgI	CCRYGG	1 cut(s)	840
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	58, 159, 319, 837
BtsI	GCAGTG	2 cut(s)	801, 820
BtsIMutI	CAGTG	3 cut(s)	801, 820, 959
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	811
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	410
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	3 cut(s)	777, 784, 841
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	6 cut(s)	17, 370, 459, 477, 504, 703
DpnI	GATC	3 cut(s)	50, 79, 879
DpnII	GATC	3 cut(s)	48, 77, 877
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	152, 337
EarI	CTCTTC	2 cut(s)	152, 337
Eco130I	CCWWGG	1 cut(s)	840
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	3 cut(s)	318, 699, 734
Eco88I	CYCGRG	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	840
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	3 cut(s)	780, 787, 844
FatI	CATG	3 cut(s)	776, 783, 840
Fnu4HI	GCNGC	4 cut(s)	12, 69, 207, 263
FokI	GGATG	4 cut(s)	45, 166, 326, 844
Fsp4HI	GCNGC	4 cut(s)	12, 69, 207, 263
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	12, 69, 207, 263
GsaI	CCCAGC	1 cut(s)	297
HaeIII	GGCC	3 cut(s)	68, 255, 389
HapII	CCGG	2 cut(s)	151, 864
HgaI	GACGC	1 cut(s)	286
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	780, 787, 844
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HindIII	AAGCTT	2 cut(s)	215, 692
HinfI	GANTC	6 cut(s)	466, 473, 517, 591, 674, 707
HpaII	CCGG	2 cut(s)	151, 864
HphI	GGTGA	3 cut(s)	31, 710, 740
Hpy166II	GTNNAC	2 cut(s)	394, 642
Hpy188I	TCNGA	7 cut(s)	20, 63, 77, 337, 679, 742, 753
Hpy188III	TCNNGA	6 cut(s)	175, 376, 413, 470, 656, 948
Hpy8I	GTNNAC	2 cut(s)	394, 642
HpyAV	CCTTC	4 cut(s)	20, 304, 475, 716
HpyCH4III	ACNGT	2 cut(s)	637, 646
HpyCH4V	TGCA	5 cut(s)	206, 394, 511, 794, 813
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	6 cut(s)	17, 370, 459, 477, 504, 703
Hsp92II	CATG	3 cut(s)	780, 787, 844
HspAI	GCGC	1 cut(s)	121
KpnI	GGTACC	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	48, 77, 877
LmnI	GCTCC	3 cut(s)	100, 824, 950
Lsp1109I	GCAGC	2 cut(s)	218, 274
LweI	GCATC	4 cut(s)	571, 861, 923, 962
MaeIII	GTNAC	3 cut(s)	322, 470, 698
MalI	GATC	3 cut(s)	50, 79, 879
MboI	GATC	3 cut(s)	48, 77, 877
MboII	GAAGA	6 cut(s)	169, 178, 208, 324, 526, 589
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	8 cut(s)	126, 138, 225, 244, 357, 754, 770, 929
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	720, 780
MnlI	CCTC	7 cut(s)	24, 91, 91, 220, 379, 893, 958
MseI	TTAA	4 cut(s)	234, 306, 360, 970
MspI	CCGG	2 cut(s)	151, 864
MspR9I	CCNGG	1 cut(s)	536
Mva1269I	GAATGC	2 cut(s)	409, 811
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	840
NdeII	GATC	3 cut(s)	48, 77, 877
NlaIII	CATG	3 cut(s)	780, 787, 844
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	470, 698
PctI	GAATGC	2 cut(s)	409, 811
PfeI	GAWTC	5 cut(s)	466, 517, 591, 674, 707
PflFI	GACNNNGTC	1 cut(s)	736
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	13, 70, 208, 264
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	534
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	410
PsyI	GACNNNGTC	1 cut(s)	736
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	234, 306, 360, 970
SatI	GCNGC	4 cut(s)	12, 69, 207, 263
Sau3AI	GATC	3 cut(s)	48, 77, 877
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	4 cut(s)	571, 861, 923, 962
SinI	GGWCC	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
Sse9I	AATT	8 cut(s)	126, 138, 225, 244, 357, 754, 770, 929
SsiI	CCGC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	637, 646
TaqI	TCGA	1 cut(s)	220
TasI	AATT	8 cut(s)	126, 138, 225, 244, 357, 754, 770, 929
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	5 cut(s)	466, 517, 591, 674, 707
Tru1I	TTAA	4 cut(s)	234, 306, 360, 970
Tru9I	TTAA	4 cut(s)	234, 306, 360, 970
TscAI	CASTG	3 cut(s)	801, 820, 966
TseFI	GTSAC	2 cut(s)	470, 698
TseI	GCWGC	3 cut(s)	11, 206, 262
Tsp45I	GTSAC	2 cut(s)	470, 698
TspDTI	ATGAA	3 cut(s)	170, 209, 765
TspRI	CASTG	3 cut(s)	801, 820, 966
Tth111I	GACNNNGTC	1 cut(s)	736
Van91I	CCANNNNNTGG	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	2 cut(s)	244, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.