Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011242

Physical Location & Seq

Genomic Coordinates Forward (+)

3861978 .. 3865974

Gene Structure 3997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG055800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCCATGGCTGCACTCAGACGAGAAGGGAGGCGTTTCGCCATCTCCCCCAATCCAATCGCCGCCGTCCGATCCTCCATCTTCCCCGCCGAGGAGCAGGCCCCTCTGGGAGTACGCTCAATTTCAACTCAAATCGTGAGAAACCGGATGAAGAGTGTTAAGAGTATCCAAAAAATTACAAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTGCGAGCAATTCAATCCAAAGCTGAAAATTCTCGTGGCCTGTGGCAGCCGTTCACAGCACTTCTTGGCGACACCCCCAGTGTCGAAGTTAAGAAGGATGTTATTGTTACCATCTCTTCAGACAAAGGTTTATGTGGTGGAATCAACTCTACTTCAGTCAAAATAAGCAAGGCATTGAACAAGTTGAATGCTGGTCCTGACAAAGAAACAAAATATGTAATTTTGGGGGAAAAAGCAAAAGCTCAATTGATTCGTGACTCAAAGAAGGACATTGAGCTAAACATAACTGAGTTGCAGAAGAATCCTTTGAACTACGCCCAGGTATCTGTCATAGCTGACGACATTTTAAAAAATGTTGAATACGATGCTTTGAGAGTTGTCTTCAACAAATTTCAGTCAGTCGTCGCATTTCTGCCAACTGTTTCTACTGTATTATCTCCAGAGGTTGTGGAGAAAGAGTCTGAAGCTGGTGGAAAGCTTGGTGACCTAGATTCGTATGAGGTTGAAGGTGGCGAGACAAAGTCAGAAATTCTACAGAATCTGACAGAGTTCCAATTTTCTTGTGTAAGTCCTTCCTTTGTATTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt

Protein Analysis

266

Amino Acids

29.05

Weight (kDa)

9.28

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt	PF00231	44 - 256	1.6e-40	ATP synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33040
fragaria_vesca	FvH4_5g13860 FvH4_5g13860 FvH4_5g13860
malus_domestica	MD06G1202600.v1.1 MD14G1211800.v1.1
prunus_persica	Prupe.5G204800_v2.0.a1
pyrus_communis	pycom06g17860 pycom14g17540
rosa_chinensis	RchiOBHm_Chr7g0183071
rosa_laevigata	RLG00000005081
rosa_multiflora	Rmu_ssc0000111.1_g000004
rosa_roxburghii	Rroxscaffold_3G00270790
rosa_rugosa	Rorug06G0452400 Rorug06G0452500
rosa_samantha	Rh7AG055800 Rh7BG055100 Rh7CG056600 Rh7DG055300
rosa_wichuraiana	Rw7G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	63, 87
AclWI	GGATC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	238, 599, 738
AcuI	CTGAAG	3 cut(s)	312, 348, 693
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	8 cut(s)	126, 224, 388, 397, 520, 569, 595, 716
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	7 cut(s)	211, 233, 452, 487, 545, 677, 688
AluI	AGCT	7 cut(s)	211, 233, 452, 487, 545, 677, 688
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	751
AoxI	GGCC	3 cut(s)	3, 99, 247
ApeKI	GCWGC	4 cut(s)	11, 200, 211, 256
ApoI	RAATTY	3 cut(s)	238, 599, 738
AspS9I	GGNCC	2 cut(s)	100, 404
AsuHPI	GGTGA	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	583
BbvI	GCAGC	3 cut(s)	198, 212, 268
BccI	CCATC	4 cut(s)	50, 86, 187, 329
BceAI	ACGGC	2 cut(s)	50, 244
BciT130I	CCWGG	1 cut(s)	530
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	2 cut(s)	698, 799
BfmI	CTRYAG	1 cut(s)	743
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	5 cut(s)	12, 63, 201, 212, 257
BlsI	GCNGC	5 cut(s)	13, 64, 202, 213, 258
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	100, 404
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	565
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	633
BsaJI	CCNNGG	3 cut(s)	6, 90, 528
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	3 cut(s)	6, 90, 528
BseGI	GGATG	2 cut(s)	153, 313
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	31, 489
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	198, 212, 268
BshFI	GGCC	3 cut(s)	5, 101, 249
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	719
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	3 cut(s)	5, 101, 249
Bsp143I	GATC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	63, 87
BspANI	GGCC	3 cut(s)	5, 101, 249
BspCNI	CTCAG	2 cut(s)	30, 490
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	3 cut(s)	6, 90, 528
BssMI	GATC	1 cut(s)	71
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	2 cut(s)	631, 640
Bst6I	CTCTTC	2 cut(s)	146, 331
BstC8I	GCNNGC	2 cut(s)	99, 216
BstDEI	CTNAG	2 cut(s)	17, 498
BstDSI	CCRYGG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	692
BstF5I	GGATG	2 cut(s)	153, 313
BstKTI	GATC	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	530
BstPI	GGTNACC	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	743
BstV1I	GCAGC	3 cut(s)	198, 212, 268
BstV2I	GAAGAC	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	5, 101, 249
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	153, 313
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	99, 216
CaiI	CAGNNNCTG	1 cut(s)	751
Cfr13I	GGNCC	2 cut(s)	100, 404
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	1 cut(s)	7
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	2 cut(s)	17, 498
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
DraI	TTTAAA	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	146, 331
EarI	CTCTTC	2 cut(s)	146, 331
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	3 cut(s)	312, 348, 693
Eco91I	GGTNACC	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	10
FaiI	YATR	6 cut(s)	8, 343, 426, 494, 542, 708
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	12, 63, 201, 212, 257
FokI	GGATG	2 cut(s)	160, 320
Fsp4HI	GCNGC	5 cut(s)	12, 63, 201, 212, 257
FspBI	CTAG	2 cut(s)	698, 799
GluI	GCNGC	5 cut(s)	12, 63, 201, 212, 257
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	3 cut(s)	5, 101, 249
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	7 cut(s)	351, 460, 467, 511, 668, 701, 748
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	6 cut(s)	20, 71, 331, 673, 736, 753
Hpy188III	TCNNGA	4 cut(s)	136, 407, 464, 650
Hpy8I	GTNNAC	1 cut(s)	264
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	5 cut(s)	20, 298, 469, 710, 792
HpyCH4III	ACNGT	2 cut(s)	631, 640
HpyCH4V	TGCA	3 cut(s)	14, 200, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	17, 498
Hsp92II	CATG	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	3 cut(s)	198, 212, 268
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	698, 799
MaeIII	GTNAC	3 cut(s)	316, 464, 692
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	6 cut(s)	73, 163, 202, 318, 520, 583
MfeI	CAATTG	1 cut(s)	455
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	120, 174, 219, 238, 429, 455, 599, 738, 764
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	461, 677
MnlI	CCTC	7 cut(s)	24, 85, 85, 114, 214, 646, 703
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	159, 300, 557
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	530
MunI	CAATTG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	464, 692
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	5 cut(s)	351, 460, 511, 701, 748
PflFI	GACNNNGTC	1 cut(s)	730
PkrI	GCNGC	5 cut(s)	13, 64, 202, 213, 258
PleI	GAGTC	2 cut(s)	461, 676
PpsI	GAGTC	2 cut(s)	461, 676
Psp6I	CCWGG	1 cut(s)	528
PspEI	GGTNACC	1 cut(s)	692
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	100, 404
PstNI	CAGNNNCTG	1 cut(s)	751
PsyI	GACNNNGTC	1 cut(s)	730
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	159, 300, 557
SatI	GCNGC	5 cut(s)	12, 63, 201, 212, 257
Sau3AI	GATC	1 cut(s)	71
Sau96I	GGNCC	2 cut(s)	100, 404
SchI	GAGTC	2 cut(s)	461, 677
ScrFI	CCNGG	1 cut(s)	530
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	1 cut(s)	404
Sse9I	AATT	9 cut(s)	120, 174, 219, 238, 429, 455, 599, 738, 764
SsiI	CCGC	2 cut(s)	63, 87
SspMI	CTAG	2 cut(s)	698, 799
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	631, 640
TaqI	TCGA	1 cut(s)	294
TasI	AATT	9 cut(s)	120, 174, 219, 238, 429, 455, 599, 738, 764
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	5 cut(s)	351, 460, 511, 701, 748
Tru1I	TTAA	3 cut(s)	159, 300, 557
Tru9I	TTAA	3 cut(s)	159, 300, 557
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	464, 692
TseI	GCWGC	4 cut(s)	11, 200, 211, 256
Tsp45I	GTSAC	2 cut(s)	464, 692
TspDTI	ATGAA	2 cut(s)	164, 203
TspRI	CASTG	1 cut(s)	295
Tth111I	GACNNNGTC	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	3 cut(s)	238, 599, 738
XspI	CTAG	2 cut(s)	698, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.