Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011242

Physical Location & Seq

Genomic Coordinates Forward (+)

16407556 .. 16412695

Gene Structure 5140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G204800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGATGGCTGCTCTGAGACGAGAGGGGAGGCGTTTCGCCCCTTTGATCTCTCCCCATCCGATGGCCGCCATCCGATCCTCCATCGTCCCTGCCGAGGAGCAGGCCCCTTTGGGAGTCCGCTCAATTTCAACTCAAATCGTTAGAAACCGGATGAAGAGTGTGAAGAATATCCAGAAAATTACAAAGGCAATGAAAATGGTTGCAGCCTCAAAGCTACGAGCAATTCAAGCTAAAGCTGAAAATTCTCGTGGCCTGTGGCAGCCCTTCACAGCACTTCTTGGTGACACTCCCAGTGTCCAAGTTAAGAAGGACGTTATTGTTACAATCTCTTCAGACAAAGGTTTATGTGGTGGGATTAACTCTACTTCAGTCAAGATAAGCAAGGCCTTAAACAAATTGAATTCTGGTCCTGACAAAGAGACAAAGTATGTCATTTTGGGGGAAAAGGCAAAGGCTCAATTGATACGTGACTCAAAGAAGGACATTGTGCTGGTCCTAACTGAGCTGCAGAAGAATCCTTTGAACTACACCCAGGTATCTGTCCTAGCTGACGACATTTTAAAAAATGTTGAGTTTGATGCTTTGAGAATCATCTTCAACAAGTTCCAATCAGTCGTCGCATTTCTGCCAACAGTGTCTACCGTATTATCTCCGGAGATTGTGGAGAGAGAGGCTGAGTCTGGTGGAAAGCTTGGTGAGCTAGATTCCTATGAGATTGAAGGTGGTGAAACAAAGTCAGAGATACTCCAGAATCTGGCAGAGTTCCAGTTTTCTTGTGTCCTGTTCAATGCTGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGATAGTTCAAGCAGAAATGCTGGAGAGATGCTTGATCGCCTTACACTCACTTATAACAGAACTCGTCAAGCATCGATCACCACAGAATTGATTGAGATTATATCAGGAGCATCAGCACTGGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt

Protein Analysis

324

Amino Acids

35.22

Weight (kDa)

9.12

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33040
fragaria_vesca	FvH4_5g13860 FvH4_5g13860 FvH4_5g13860
malus_domestica	MD06G1202600.v1.1 MD14G1211800.v1.1
prunus_persica	Prupe.5G204800_v2.0.a1
pyrus_communis	pycom06g17860 pycom14g17540
rosa_chinensis	RchiOBHm_Chr7g0183071
rosa_laevigata	RLG00000005081
rosa_multiflora	Rmu_ssc0000111.1_g000004
rosa_roxburghii	Rroxscaffold_3G00270790
rosa_rugosa	Rorug06G0452400 Rorug06G0452500
rosa_samantha	Rh7AG055800 Rh7BG055100 Rh7CG056600 Rh7DG055300
rosa_wichuraiana	Rw7G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	897
AccB7I	CCANNNNNTGG	2 cut(s)	64, 757
AccBSI	CCGCTC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	641
AccIII	TCCGGA	1 cut(s)	655
AciI	CCGC	2 cut(s)	69, 121
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	244, 403
AcuI	CTGAAG	2 cut(s)	318, 354
AfiI	CCNNNNNNNGG	3 cut(s)	64, 97, 757
AgsI	TTSAA	8 cut(s)	132, 230, 403, 526, 601, 722, 790, 852
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	7 cut(s)	217, 233, 239, 508, 551, 694, 703
AluI	AGCT	7 cut(s)	217, 233, 239, 508, 551, 694, 703
Alw26I	GTCTC	2 cut(s)	13, 416
AlwI	GGATC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	757
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	4 cut(s)	66, 105, 253, 387
ApeKI	GCWGC	4 cut(s)	11, 206, 262, 508
ApoI	RAATTY	2 cut(s)	244, 403
AspS9I	GGNCC	3 cut(s)	106, 410, 496
AsuHPI	GGTGA	4 cut(s)	296, 710, 740, 913
AvaII	GGWCC	2 cut(s)	410, 496
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BauI	CACGAG	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	218, 274, 495
BccI	CCATC	4 cut(s)	58, 66, 80, 92
BciT130I	CCWGG	1 cut(s)	536
BcoDI	GTCTC	2 cut(s)	13, 416
BfaI	CTAG	3 cut(s)	548, 704, 970
BfmI	CTRYAG	1 cut(s)	509
BisI	GCNGC	5 cut(s)	12, 69, 207, 263, 509
BlsI	GCNGC	5 cut(s)	13, 70, 208, 264, 510
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	2 cut(s)	410, 496
BmgT120I	GGNCC	3 cut(s)	106, 410, 496
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	536
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	4 cut(s)	571, 861, 923, 962
BmuI	ACTGGG	1 cut(s)	288
BpmI	CTGGAG	2 cut(s)	734, 885
Bsa29I	ATCGAT	1 cut(s)	917
BsaAI	YACGTR	1 cut(s)	470
BsaJI	CCNNGG	3 cut(s)	96, 534, 840
BsaWI	WCCGGW	2 cut(s)	150, 655
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 97, 757
Bse1I	ACTGG	3 cut(s)	294, 769, 966
Bse3DI	GCAATG	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	536
BseCI	ATCGAT	1 cut(s)	917
BseDI	CCNNGG	3 cut(s)	96, 534, 840
BseGI	GGATG	4 cut(s)	58, 72, 159, 837
BseLI	CCNNNNNNNGG	3 cut(s)	64, 97, 757
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	3 cut(s)	8, 495, 669
BseNI	ACTGG	3 cut(s)	294, 769, 966
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	218, 274, 495
BshFI	GGCC	4 cut(s)	68, 107, 255, 389
BshVI	ATCGAT	1 cut(s)	917
BsiSI	CCGG	2 cut(s)	151, 656
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	64, 97, 757
BsmAI	GTCTC	2 cut(s)	13, 416
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	811
BsnI	GGCC	4 cut(s)	68, 107, 255, 389
Bsp13I	TCCGGA	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	48, 77, 877, 918
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	2 cut(s)	69, 121
BspANI	GGCC	4 cut(s)	68, 107, 255, 389
BspCNI	CTCAG	3 cut(s)	9, 496, 670
BspDI	ATCGAT	1 cut(s)	917
BspEI	TCCGGA	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	513
BspPI	GGATC	1 cut(s)	72
BsrBI	CCGCTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	3 cut(s)	294, 769, 966
BssECI	CCNNGG	3 cut(s)	96, 534, 840
BssMI	GATC	4 cut(s)	48, 77, 877, 918
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	840
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	637, 646
Bst6I	CTCTTC	2 cut(s)	152, 337
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	105, 811
BstDEI	CTNAG	3 cut(s)	17, 504, 678
BstDSI	CCRYGG	1 cut(s)	840
BstF5I	GGATG	4 cut(s)	58, 72, 159, 837
BstKTI	GATC	4 cut(s)	51, 80, 880, 921
BstMAI	GTCTC	2 cut(s)	13, 416
BstMBI	GATC	4 cut(s)	48, 77, 877, 918
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 230, 700
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	218, 274, 495
Bsu15I	ATCGAT	1 cut(s)	917
BsuRI	GGCC	4 cut(s)	68, 107, 255, 389
BsuTUI	ATCGAT	1 cut(s)	917
BtgI	CCRYGG	1 cut(s)	840
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	58, 72, 159, 837
BtsI	GCAGTG	1 cut(s)	820
BtsIMutI	CAGTG	4 cut(s)	301, 642, 820, 959
Cac8I	GCNNGC	2 cut(s)	105, 811
CaiI	CAGNNNCTG	1 cut(s)	757
Cfr13I	GGNCC	3 cut(s)	106, 410, 496
ClaI	ATCGAT	1 cut(s)	917
CviAII	CATG	1 cut(s)	841
DdeI	CTNAG	3 cut(s)	17, 504, 678
DpnI	GATC	4 cut(s)	50, 79, 879, 920
DpnII	GATC	4 cut(s)	48, 77, 877, 918
DraI	TTTAAA	1 cut(s)	564
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	152, 337
EarI	CTCTTC	2 cut(s)	152, 337
Eco130I	CCWWGG	1 cut(s)	840
Eco147I	AGGCCT	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	410, 496
Eco57I	CTGAAG	2 cut(s)	318, 354
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	840
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	1 cut(s)	844
FaiI	YATR	6 cut(s)	349, 432, 714, 842, 897, 944
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	840
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	5 cut(s)	12, 69, 207, 263, 509
FokI	GGATG	4 cut(s)	45, 59, 166, 844
Fsp4HI	GCNGC	5 cut(s)	12, 69, 207, 263, 509
FspBI	CTAG	3 cut(s)	548, 704, 970
GluI	GCNGC	5 cut(s)	12, 69, 207, 263, 509
GsuI	CTGGAG	2 cut(s)	734, 885
HaeIII	GGCC	4 cut(s)	68, 107, 255, 389
HapII	CCGG	2 cut(s)	151, 656
Hin1II	CATG	1 cut(s)	844
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	7 cut(s)	117, 473, 517, 591, 680, 707, 754
HpaII	CCGG	2 cut(s)	151, 656
HphI	GGTGA	4 cut(s)	296, 710, 740, 913
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	5 cut(s)	18, 63, 77, 337, 742
Hpy188III	TCNNGA	6 cut(s)	175, 376, 413, 656, 751, 948
Hpy8I	GTNNAC	1 cut(s)	642
Hpy99I	CGWCG	1 cut(s)	623
HpyAV	CCTTC	4 cut(s)	277, 304, 475, 716
HpyCH4III	ACNGT	2 cut(s)	637, 646
HpyCH4IV	ACGT	2 cut(s)	315, 469
HpyCH4V	TGCA	3 cut(s)	206, 511, 813
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 230, 700
HpyF3I	CTNAG	3 cut(s)	17, 504, 678
HpySE526I	ACGT	2 cut(s)	315, 469
Hsp92II	CATG	1 cut(s)	844
Kpn2I	TCCGGA	1 cut(s)	655
Kzo9I	GATC	4 cut(s)	48, 77, 877, 918
LmnI	GCTCC	3 cut(s)	100, 824, 950
Lsp1109I	GCAGC	3 cut(s)	218, 274, 495
LweI	GCATC	4 cut(s)	571, 861, 923, 962
MaeI	CTAG	3 cut(s)	548, 704, 970
MaeII	ACGT	2 cut(s)	315, 469
MaeIII	GTNAC	3 cut(s)	284, 322, 470
MalI	GATC	4 cut(s)	50, 79, 879, 920
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	4 cut(s)	48, 77, 877, 918
MboII	GAAGA	5 cut(s)	169, 178, 324, 526, 589
MfeI	CAATTG	1 cut(s)	461
MluCI	AATT	8 cut(s)	126, 180, 225, 244, 398, 403, 461, 929
MlyI	GAGTC	3 cut(s)	126, 467, 689
MmeI	TCCRAC	1 cut(s)	780
MnlI	CCTC	7 cut(s)	19, 24, 91, 91, 220, 667, 958
MroI	TCCGGA	1 cut(s)	655
MseI	TTAA	4 cut(s)	306, 360, 392, 563
MspI	CCGG	2 cut(s)	151, 656
MspR9I	CCNGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	811
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	11, 230, 700
NcoI	CCATGG	1 cut(s)	840
NdeII	GATC	4 cut(s)	48, 77, 877, 918
NlaIII	CATG	1 cut(s)	844
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	284, 470
PceI	AGGCCT	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	811
PfeI	GAWTC	4 cut(s)	517, 591, 707, 754
PflMI	CCANNNNNTGG	2 cut(s)	64, 757
PkrI	GCNGC	5 cut(s)	13, 70, 208, 264, 510
PleI	GAGTC	3 cut(s)	125, 467, 688
PpsI	GAGTC	3 cut(s)	125, 467, 688
Ppu21I	YACGTR	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	3 cut(s)	106, 410, 496
PstI	CTGCAG	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	757
SaqAI	TTAA	4 cut(s)	306, 360, 392, 563
SatI	GCNGC	5 cut(s)	12, 69, 207, 263, 509
Sau3AI	GATC	4 cut(s)	48, 77, 877, 918
Sau96I	GGNCC	3 cut(s)	106, 410, 496
SchI	GAGTC	3 cut(s)	126, 467, 689
ScrFI	CCNGG	1 cut(s)	536
SfaNI	GCATC	4 cut(s)	571, 861, 923, 962
SfcI	CTRYAG	1 cut(s)	509
SinI	GGWCC	2 cut(s)	410, 496
Sse9I	AATT	8 cut(s)	126, 180, 225, 244, 398, 403, 461, 929
SseBI	AGGCCT	1 cut(s)	389
SsiI	CCGC	2 cut(s)	69, 121
SspMI	CTAG	3 cut(s)	548, 704, 970
StuI	AGGCCT	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	637, 646
TaiI	ACGT	2 cut(s)	318, 472
TaqI	TCGA	1 cut(s)	917
TasI	AATT	8 cut(s)	126, 180, 225, 244, 398, 403, 461, 929
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	4 cut(s)	517, 591, 707, 754
Tru1I	TTAA	4 cut(s)	306, 360, 392, 563
Tru9I	TTAA	4 cut(s)	306, 360, 392, 563
TscAI	CASTG	4 cut(s)	301, 642, 820, 966
TseFI	GTSAC	2 cut(s)	284, 470
TseI	GCWGC	4 cut(s)	11, 206, 262, 508
Tsp45I	GTSAC	2 cut(s)	284, 470
TspDTI	ATGAA	2 cut(s)	170, 209
TspRI	CASTG	4 cut(s)	301, 642, 820, 966
Van91I	CCANNNNNTGG	2 cut(s)	64, 757
VpaK11BI	GGWCC	2 cut(s)	410, 496
XapI	RAATTY	2 cut(s)	244, 403
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	3 cut(s)	548, 704, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.