Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011242

Physical Location & Seq

Genomic Coordinates Reverse (-)

21776643 .. 21780245

Gene Structure 3603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17860.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGATGGCTGCTCTCAGACGAGAAGGGAGGCGTTTCGCCCCTTTGATCTCTCCCCATCCGATGGCCGCCGACCGATCCTCCATCATCCCAGCCGAGGAGCAAGTACCTTTGGGAGTGCGCTCAATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTGAAGAATATCCAGAAGATCGCAAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTCCGAGCAATTCAAGTTAAAGCTGAAAATTCTCGTGGCCTGTGGCAGCCTTTCACAGCACTTCTTGGCGACACTCCCAGCGTCAGCGTTAAGAAGGATGTTATTATTACCATCTCTTCAGACAAAGGTTTATGTGGTGGAATTAACTCTACCTCAGTCAAGATAAGCAAGGCCTTGCACAAGTTGAACGCTGGTCCTGAAAAAGAGACAAAATATGTCATTTTGGGGGAAAAAGCAAAGGCTCAGTTGATTCGTGACTCTAAGAAGGACATTGAGCTATGCATAACTGAGTTGCAGAAGAACCCTTTGAACTACACCCAGGTATCTGTCATAGCTGATGACATTTTGAAAAATGTTGAGTTTGATGCTTTGAGAATCGTATTCAACAAGTTTCAGTCAGTCGTCTCATTTCTGCCAACTGTGTCTACAGTATTATCTCCCGAGATTGTGGAGAGAGAGTCTGAAGTTGGTGGAAAGCTTGGCGACCTAGATTCCTATGAGATTGAAGGTGGTGAGACAAAGTCAGAGATACTTCAGAATTTGGCAGAGTTCCAATTTTCATGTGTATTGTTCAATGCGGTATTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCAAGCAGAAATGCTGGAGAGATGCTTGATCGCCTCACACTCACTTATAACAGAACTCGTCAAGCATCTATTACAACCGAATTGATTGAGATTATATCAGGTGCATCAGCACTGGAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt

Protein Analysis

324

Amino Acids

35.3

Weight (kDa)

8.76

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33040
fragaria_vesca	FvH4_5g13860 FvH4_5g13860 FvH4_5g13860
malus_domestica	MD06G1202600.v1.1 MD14G1211800.v1.1
prunus_persica	Prupe.5G204800_v2.0.a1
pyrus_communis	pycom06g17860 pycom14g17540
rosa_chinensis	RchiOBHm_Chr7g0183071
rosa_laevigata	RLG00000005081
rosa_multiflora	Rmu_ssc0000111.1_g000004
rosa_roxburghii	Rroxscaffold_3G00270790
rosa_rugosa	Rorug06G0452400 Rorug06G0452500
rosa_samantha	Rh7AG055800 Rh7BG055100 Rh7CG056600 Rh7DG055300
rosa_wichuraiana	Rw7G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	897
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	641
AciI	CCGC	2 cut(s)	69, 794
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	244, 754
AcuI	CTGAAG	3 cut(s)	318, 699, 734
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	64, 97
AgsI	TTSAA	8 cut(s)	132, 230, 403, 526, 565, 601, 722, 790
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	6 cut(s)	217, 239, 493, 551, 694, 849
AluI	AGCT	6 cut(s)	217, 239, 493, 551, 694, 849
Alw26I	GTCTC	3 cut(s)	416, 625, 725
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	3 cut(s)	66, 253, 387
ApeKI	GCWGC	3 cut(s)	11, 206, 262
ApoI	RAATTY	2 cut(s)	244, 754
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	740
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	410
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BauI	CACGAG	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	218, 274
BccI	CCATC	5 cut(s)	58, 66, 92, 193, 335
BciT130I	CCWGG	1 cut(s)	536
BcoDI	GTCTC	3 cut(s)	416, 625, 725
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	642
BisI	GCNGC	4 cut(s)	12, 69, 207, 263
BlsI	GCNGC	4 cut(s)	13, 70, 208, 264
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	4 cut(s)	571, 861, 923, 962
BpmI	CTGGAG	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	835
BsaJI	CCNNGG	3 cut(s)	96, 534, 840
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 659, 689
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 97
Bse1I	ACTGG	1 cut(s)	966
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	3 cut(s)	96, 534, 840
BseGI	GGATG	5 cut(s)	58, 87, 159, 319, 837
BseLI	CCNNNNNNNGG	2 cut(s)	64, 97
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	4 cut(s)	31, 384, 473, 495
BseNI	ACTGG	1 cut(s)	966
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	218, 274
BseYI	CCCAGC	2 cut(s)	91, 293
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	68, 255, 389
BsiEI	CGRYCG	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	64, 97
BsmAI	GTCTC	3 cut(s)	416, 625, 725
BsmBI	CGTCTC	1 cut(s)	625
BsmI	GAATGC	1 cut(s)	811
BsnI	GGCC	3 cut(s)	68, 255, 389
BsoBI	CYCGRG	1 cut(s)	656
Bsp143I	GATC	4 cut(s)	48, 77, 180, 877
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	2 cut(s)	69, 794
BspANI	GGCC	3 cut(s)	68, 255, 389
BspCNI	CTCAG	4 cut(s)	30, 383, 472, 496
BspPI	GGATC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	966
BssECI	CCNNGG	3 cut(s)	96, 534, 840
BssMI	GATC	4 cut(s)	48, 77, 180, 877
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	840
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	637, 646
Bst6I	CTCTTC	2 cut(s)	152, 337
BstC8I	GCNNGC	1 cut(s)	811
BstDEI	CTNAG	5 cut(s)	17, 370, 459, 477, 504
BstDSI	CCRYGG	1 cut(s)	840
BstF5I	GGATG	5 cut(s)	58, 87, 159, 319, 837
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	51, 80, 183, 880
BstMAI	GTCTC	3 cut(s)	416, 625, 725
BstMBI	GATC	4 cut(s)	48, 77, 180, 877
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	1 cut(s)	642
BstV1I	GCAGC	2 cut(s)	218, 274
BsuRI	GGCC	3 cut(s)	68, 255, 389
BtgI	CCRYGG	1 cut(s)	840
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	5 cut(s)	58, 87, 159, 319, 837
BtsI	GCAGTG	1 cut(s)	820
BtsIMutI	CAGTG	2 cut(s)	820, 959
Cac8I	GCNNGC	1 cut(s)	811
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	410
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	777, 841
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	5 cut(s)	17, 370, 459, 477, 504
DpnI	GATC	4 cut(s)	50, 79, 182, 879
DpnII	GATC	4 cut(s)	48, 77, 180, 877
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	152, 337
EarI	CTCTTC	2 cut(s)	152, 337
Eco130I	CCWWGG	1 cut(s)	840
Eco147I	AGGCCT	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	3 cut(s)	318, 699, 734
Eco88I	CYCGRG	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	840
EcoT22I	ATGCAT	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	840
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	2 cut(s)	780, 844
FatI	CATG	2 cut(s)	776, 840
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	4 cut(s)	12, 69, 207, 263
FokI	GGATG	5 cut(s)	45, 74, 166, 326, 844
Fsp4HI	GCNGC	4 cut(s)	12, 69, 207, 263
FspBI	CTAG	1 cut(s)	704
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	12, 69, 207, 263
GsaI	CCCAGC	2 cut(s)	95, 297
GsuI	CTGGAG	1 cut(s)	885
HaeIII	GGCC	3 cut(s)	68, 255, 389
HapII	CCGG	1 cut(s)	151
HgaI	GACGC	1 cut(s)	286
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	780, 844
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	5 cut(s)	466, 473, 591, 674, 707
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	740
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	7 cut(s)	20, 63, 221, 337, 679, 742, 753
Hpy188III	TCNNGA	5 cut(s)	175, 376, 413, 470, 656
Hpy8I	GTNNAC	1 cut(s)	642
HpyAV	CCTTC	4 cut(s)	20, 304, 475, 716
HpyCH4III	ACNGT	2 cut(s)	637, 646
HpyCH4V	TGCA	6 cut(s)	206, 394, 498, 511, 813, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	5 cut(s)	17, 370, 459, 477, 504
Hsp92II	CATG	2 cut(s)	780, 844
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	48, 77, 180, 877
LmnI	GCTCC	3 cut(s)	100, 222, 824
Lsp1109I	GCAGC	2 cut(s)	218, 274
LweI	GCATC	4 cut(s)	571, 861, 923, 962
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	4 cut(s)	50, 79, 182, 879
MboI	GATC	4 cut(s)	48, 77, 180, 877
MboII	GAAGA	6 cut(s)	169, 178, 190, 208, 324, 526
MluCI	AATT	8 cut(s)	126, 138, 225, 244, 357, 754, 770, 929
MlyI	GAGTC	2 cut(s)	467, 683
MnlI	CCTC	7 cut(s)	24, 91, 91, 220, 379, 893, 958
Mph1103I	ATGCAT	1 cut(s)	500
MseI	TTAA	4 cut(s)	234, 306, 360, 970
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	536
Mva1269I	GAATGC	1 cut(s)	811
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	840
NdeII	GATC	4 cut(s)	48, 77, 180, 877
NlaIII	CATG	2 cut(s)	780, 844
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	500
PceI	AGGCCT	1 cut(s)	389
PctI	GAATGC	1 cut(s)	811
PfeI	GAWTC	3 cut(s)	466, 591, 707
PflFI	GACNNNGTC	1 cut(s)	736
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	13, 70, 208, 264
PleI	GAGTC	2 cut(s)	467, 682
PpsI	GAGTC	2 cut(s)	467, 682
PsiI	TTATAA	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	534
PspFI	CCCAGC	2 cut(s)	91, 293
PspGI	CCWGG	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	410
PsyI	GACNNNGTC	1 cut(s)	736
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	234, 306, 360, 970
SatI	GCNGC	4 cut(s)	12, 69, 207, 263
Sau3AI	GATC	4 cut(s)	48, 77, 180, 877
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	2 cut(s)	467, 683
ScrFI	CCNGG	1 cut(s)	536
SfaNI	GCATC	4 cut(s)	571, 861, 923, 962
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
Sse9I	AATT	8 cut(s)	126, 138, 225, 244, 357, 754, 770, 929
SseBI	AGGCCT	1 cut(s)	389
SsiI	CCGC	2 cut(s)	69, 794
SspMI	CTAG	1 cut(s)	704
StuI	AGGCCT	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	637, 646
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	8 cut(s)	126, 138, 225, 244, 357, 754, 770, 929
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	466, 591, 707
Tru1I	TTAA	4 cut(s)	234, 306, 360, 970
Tru9I	TTAA	4 cut(s)	234, 306, 360, 970
TscAI	CASTG	2 cut(s)	820, 966
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	3 cut(s)	11, 206, 262
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	170, 209, 765
TspRI	CASTG	2 cut(s)	820, 966
Tth111I	GACNNNGTC	1 cut(s)	736
Van91I	CCANNNNNTGG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	2 cut(s)	244, 754
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	1 cut(s)	704
Zsp2I	ATGCAT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.