Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011242

Physical Location & Seq

Genomic Coordinates Reverse (-)

63290778 .. 63294469

Gene Structure 3692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCCATGGCTGCTCTCAGACGAGAAGGGAGGCGTTTCGCCATCTCCCCCCCAATCCAATCGCCGCCGCCCGATCCTCCATCTTCCCCGCCGATGAGAAACCGGATGAAGAGTGTTAAGAGTATCCAAAAAATTACAAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTGCGAGCAATTCAATCCAAAGCTGAAAATTCTCGTGGCCTGTGGCAGCCTTTCACAGCACTTCTTGGCGACACCCCCAGTGTCGAAGTTAAGAAGGATGTTATTGTTACCATCTCTTCAGACAAAGGTTTATGTGGTGGAATCAACTCTACTTCAGTCAAAATAAGCAAGGCATTGAACAAGTTGACTGCTGGTCCTGACAAAGAAACAAAATATGTAATTTTGGGGGAAAAAGCAAAAGCTCAATTGATTCGTGACTCAAAGAAGGACATTGAGCTAAACATAACTGAGTTGCAGAAGAATCCTTTGAACTACGCCCAGGTATCTGTCATAGCTGACGACATTTTAAAAAATGTTGAATACGATGCTTTGAGAGTTGTCTTCAACAAATTTCAGTCAGTCGTCTCATTTCTGCCAACTGTTTCTACTGTATTATCTCCAGAGGTTGTGGAGAAAGAGTCTGAAGCTGGTGGAAAGCTTGGTGACCTAGATTCGTATGAGGTTGAAGGTGGCGAGACAAAGTCAGAAATTCTACAGAATCTGACAGAGTTCCAATTTTCTTGTGTCTTGTTCAATGGGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCCAGGATGTCTGCCATGGACAGCTCAAGCAGAAATGCCGGAGAGATGCTTGATCGCCTCACACTCAGTTACAACAGAACCCGTCAAGCATCTATCACCACAGAATTGATCGAGATTATATCTGGAGCATCAGCACTGGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt

Protein Analysis

307

Amino Acids

33.4

Weight (kDa)

8.6

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt	PF00231	32 - 305	3e-75	ATP synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33040
fragaria_vesca	FvH4_5g13860 FvH4_5g13860 FvH4_5g13860
malus_domestica	MD06G1202600.v1.1 MD14G1211800.v1.1
prunus_persica	Prupe.5G204800_v2.0.a1
pyrus_communis	pycom06g17860 pycom14g17540
rosa_chinensis	RchiOBHm_Chr7g0183071
rosa_laevigata	RLG00000005081
rosa_multiflora	Rmu_ssc0000111.1_g000004
rosa_roxburghii	Rroxscaffold_3G00270790
rosa_rugosa	Rorug06G0452400 Rorug06G0452500
rosa_samantha	Rh7AG055800 Rh7BG055100 Rh7CG056600 Rh7DG055300
rosa_wichuraiana	Rw7G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	65, 68, 89
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	196, 557, 696
AcuI	CTGAAG	3 cut(s)	270, 306, 651
AgsI	TTSAA	7 cut(s)	182, 346, 478, 527, 553, 674, 742
AhdI	GACNNNNNGTC	1 cut(s)	360
AjnI	CCWGG	2 cut(s)	486, 779
AluBI	AGCT	8 cut(s)	169, 191, 410, 445, 503, 635, 646, 801
AluI	AGCT	8 cut(s)	169, 191, 410, 445, 503, 635, 646, 801
Alw26I	GTCTC	2 cut(s)	577, 677
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	709
AoxI	GGCC	2 cut(s)	3, 205
ApeKI	GCWGC	4 cut(s)	11, 158, 169, 214
ApoI	RAATTY	3 cut(s)	196, 557, 696
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	662, 865
AvaII	GGWCC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	541
BbvI	GCAGC	3 cut(s)	156, 170, 226
BccI	CCATC	4 cut(s)	50, 88, 145, 287
BciT130I	CCWGG	2 cut(s)	488, 781
BciVI	GTATCC	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	577, 677
BfaI	CTAG	2 cut(s)	656, 922
BfmI	CTRYAG	1 cut(s)	701
BfuI	GTATCC	1 cut(s)	134
BisI	GCNGC	6 cut(s)	12, 65, 68, 159, 170, 215
BlsI	GCNGC	6 cut(s)	13, 66, 69, 160, 171, 216
Bme1390I	CCNGG	2 cut(s)	488, 781
Bme18I	GGWCC	1 cut(s)	362
BmeRI	GACNNNNNGTC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	778
BmrFI	CCNGG	2 cut(s)	488, 781
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	4 cut(s)	523, 813, 875, 914
BmuI	ACTGGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	541
BpmI	CTGGAG	2 cut(s)	591, 921
BpuEI	CTTGAG	1 cut(s)	787
BsaJI	CCNNGG	3 cut(s)	6, 486, 792
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bse1I	ACTGG	2 cut(s)	246, 918
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	488, 781
BseDI	CCNNGG	3 cut(s)	6, 486, 792
BseGI	GGATG	3 cut(s)	111, 271, 789
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	31, 447, 856
BseNI	ACTGG	2 cut(s)	246, 918
BseXI	GCAGC	3 cut(s)	156, 170, 226
BshFI	GGCC	2 cut(s)	5, 207
BsiSI	CCGG	2 cut(s)	103, 816
BsmAI	GTCTC	2 cut(s)	577, 677
BsmBI	CGTCTC	1 cut(s)	577
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	2 cut(s)	5, 207
Bsp143I	GATC	3 cut(s)	73, 829, 885
Bsp19I	CCATGG	2 cut(s)	6, 792
BspACI	CCGC	3 cut(s)	65, 68, 89
BspANI	GGCC	2 cut(s)	5, 207
BspCNI	CTCAG	3 cut(s)	30, 448, 855
BspLI	GGNNCC	1 cut(s)	778
BspPI	GGATC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	246, 918
BssECI	CCNNGG	3 cut(s)	6, 486, 792
BssMI	GATC	3 cut(s)	73, 829, 885
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	2 cut(s)	6, 792
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	488, 781
Bst4CI	ACNGT	2 cut(s)	589, 598
Bst6I	CTCTTC	2 cut(s)	104, 289
BstC8I	GCNNGC	2 cut(s)	174, 763
BstDEI	CTNAG	3 cut(s)	17, 456, 842
BstDSI	CCRYGG	2 cut(s)	6, 792
BstEII	GGTNACC	1 cut(s)	650
BstF5I	GGATG	3 cut(s)	111, 271, 789
BstKTI	GATC	3 cut(s)	76, 832, 888
BstMAI	GTCTC	2 cut(s)	577, 677
BstMBI	GATC	3 cut(s)	73, 829, 885
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	488, 781
BstPI	GGTNACC	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	486, 779
BstSFI	CTRYAG	1 cut(s)	701
BstV1I	GCAGC	3 cut(s)	156, 170, 226
BstV2I	GAAGAC	1 cut(s)	541
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	5, 207
BtgI	CCRYGG	2 cut(s)	6, 792
BtsCI	GGATG	3 cut(s)	111, 271, 789
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	3 cut(s)	253, 772, 911
Cac8I	GCNNGC	2 cut(s)	174, 763
CaiI	CAGNNNCTG	1 cut(s)	709
Cfr13I	GGNCC	1 cut(s)	362
CviAII	CATG	2 cut(s)	7, 793
DdeI	CTNAG	3 cut(s)	17, 456, 842
DpnI	GATC	3 cut(s)	75, 831, 887
DpnII	GATC	3 cut(s)	73, 829, 885
DraI	TTTAAA	1 cut(s)	516
DriI	GACNNNNNGTC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	104, 289
Eam1105I	GACNNNNNGTC	1 cut(s)	360
EarI	CTCTTC	2 cut(s)	104, 289
Eco130I	CCWWGG	2 cut(s)	6, 792
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	3 cut(s)	270, 306, 651
Eco91I	GGTNACC	1 cut(s)	650
EcoO65I	GGTNACC	1 cut(s)	650
EcoRII	CCWGG	2 cut(s)	486, 779
EcoT14I	CCWWGG	2 cut(s)	6, 792
ErhI	CCWWGG	2 cut(s)	6, 792
Esp3I	CGTCTC	1 cut(s)	577
FaeI	CATG	2 cut(s)	10, 796
FaiI	YATR	8 cut(s)	8, 301, 384, 452, 500, 666, 794, 896
FatI	CATG	2 cut(s)	6, 792
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	6 cut(s)	12, 65, 68, 159, 170, 215
FokI	GGATG	3 cut(s)	118, 278, 796
Fsp4HI	GCNGC	6 cut(s)	12, 65, 68, 159, 170, 215
FspBI	CTAG	2 cut(s)	656, 922
GluI	GCNGC	6 cut(s)	12, 65, 68, 159, 170, 215
GsuI	CTGGAG	2 cut(s)	591, 921
HaeIII	GGCC	2 cut(s)	5, 207
HapII	CCGG	2 cut(s)	103, 816
Hin1II	CATG	2 cut(s)	10, 796
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	7 cut(s)	309, 418, 425, 469, 626, 659, 706
HpaII	CCGG	2 cut(s)	103, 816
HphI	GGTGA	2 cut(s)	662, 865
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	5 cut(s)	20, 289, 631, 694, 711
Hpy188III	TCNNGA	5 cut(s)	365, 422, 608, 889, 900
Hpy8I	GTNNAC	1 cut(s)	354
HpyAV	CCTTC	4 cut(s)	20, 256, 427, 668
HpyCH4III	ACNGT	2 cut(s)	589, 598
HpyCH4V	TGCA	3 cut(s)	158, 463, 765
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	17, 456, 842
Hsp92II	CATG	2 cut(s)	10, 796
Kzo9I	GATC	3 cut(s)	73, 829, 885
LmnI	GCTCC	2 cut(s)	776, 902
Lsp1109I	GCAGC	3 cut(s)	156, 170, 226
LweI	GCATC	4 cut(s)	523, 813, 875, 914
MaeI	CTAG	2 cut(s)	656, 922
MaeIII	GTNAC	4 cut(s)	274, 422, 650, 845
MalI	GATC	3 cut(s)	75, 831, 887
MboI	GATC	3 cut(s)	73, 829, 885
MboII	GAAGA	6 cut(s)	75, 121, 160, 276, 478, 541
MfeI	CAATTG	1 cut(s)	413
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	132, 177, 196, 387, 413, 557, 696, 722, 881
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	419, 635
MmeI	TCCRAC	1 cut(s)	732
MnlI	CCTC	7 cut(s)	24, 87, 172, 604, 661, 845, 910
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	117, 258, 515
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	103, 816
MspR9I	CCNGG	2 cut(s)	488, 781
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	2 cut(s)	488, 781
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	2 cut(s)	6, 792
NdeII	GATC	3 cut(s)	73, 829, 885
NlaIII	CATG	2 cut(s)	10, 796
NlaIV	GGNNCC	1 cut(s)	778
NmuCI	GTSAC	2 cut(s)	422, 650
PctI	GAATGC	1 cut(s)	763
PfeI	GAWTC	5 cut(s)	309, 418, 469, 659, 706
PflFI	GACNNNGTC	1 cut(s)	688
PkrI	GCNGC	6 cut(s)	13, 66, 69, 160, 171, 216
PleI	GAGTC	2 cut(s)	419, 634
PpsI	GAGTC	2 cut(s)	419, 634
Psp6I	CCWGG	2 cut(s)	486, 779
PspEI	GGTNACC	1 cut(s)	650
PspGI	CCWGG	2 cut(s)	486, 779
PspN4I	GGNNCC	1 cut(s)	778
PspPI	GGNCC	1 cut(s)	362
PstNI	CAGNNNCTG	1 cut(s)	709
PsyI	GACNNNGTC	1 cut(s)	688
SaqAI	TTAA	3 cut(s)	117, 258, 515
SatI	GCNGC	6 cut(s)	12, 65, 68, 159, 170, 215
Sau3AI	GATC	3 cut(s)	73, 829, 885
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	419, 635
ScrFI	CCNGG	2 cut(s)	488, 781
SfaNI	GCATC	4 cut(s)	523, 813, 875, 914
SfcI	CTRYAG	1 cut(s)	701
SinI	GGWCC	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
Sse9I	AATT	9 cut(s)	132, 177, 196, 387, 413, 557, 696, 722, 881
SsiI	CCGC	3 cut(s)	65, 68, 89
SspMI	CTAG	2 cut(s)	656, 922
StyD4I	CCNGG	2 cut(s)	486, 779
StyI	CCWWGG	2 cut(s)	6, 792
TaaI	ACNGT	2 cut(s)	589, 598
TaqI	TCGA	2 cut(s)	252, 888
TasI	AATT	9 cut(s)	132, 177, 196, 387, 413, 557, 696, 722, 881
TauI	GCSGC	2 cut(s)	67, 70
TfiI	GAWTC	5 cut(s)	309, 418, 469, 659, 706
Tru1I	TTAA	3 cut(s)	117, 258, 515
Tru9I	TTAA	3 cut(s)	117, 258, 515
TscAI	CASTG	3 cut(s)	253, 772, 918
TseFI	GTSAC	2 cut(s)	422, 650
TseI	GCWGC	4 cut(s)	11, 158, 169, 214
Tsp45I	GTSAC	2 cut(s)	422, 650
TspDTI	ATGAA	2 cut(s)	122, 161
TspRI	CASTG	3 cut(s)	253, 772, 918
Tth111I	GACNNNGTC	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	3 cut(s)	196, 557, 696
XspI	CTAG	2 cut(s)	656, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.