Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011242

Physical Location & Seq

Genomic Coordinates Reverse (-)

19435114 .. 19438059

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCCGCCGTCCGATCCTCCATCATCCCAGCCGAGGAGCAGGTACCTTTAGGAGTGCGCTCAATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTGAAGAATATCCAGAAAATCACAAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTTCGAGCAATTCAAGTTAAAGCTGAAAATTCTCGTGGCCTGTGGCAGCCTTTCACAGCACTTCTTGGTGACACTCCCAGCGTCAGCGTTAAGAAGGATGTTATTGTTACCATCTCTTCAGACAAAGGTTTATGTGGTGGAATTAACTCTACCTCAGTCAAGATAAGCAAGGCCTTGCACAAGTTGAACGCTGGTCCTGAAAAAGAGACAAAATATGTCATTTTGGGGGAAAAAGCAAAGGCTCAGTTGATTCGTGACTCTAAGAAGGACATTGAGCTATGCATAACTGAGTTGCAGAAGAATCCTTTGAACTACACCCAGGTATCTGTCATAGCTGATGACATTTTGAAAAATGTTGAGTTTGATGCCTTCAGAATCGTCTTCAACAAGTTTCAGTCAGTCGTCTCATTTCTGCCAACTGTGTCAACAGTATTATCTCCCGAGATTGTAGAGAGAGAATCTGAAGCTGGTGGAAAGCTTGGTGACTTAGATTCCTATGAGATTGAAGGTGGTGAGACAAAGTCGGAGATACTTCAGAATTTGGCAGAGTTCCAATTTTCATGTGTCATGTTCAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCAAGCAGAAATGCCGGAGAGATGCTTGATCGCCTCACACTCACTTATAACAGAACTCGTCAAGCATCTATTACTACCGAATTGATTGAGATTATATCAGGAGCATCAGCACTGGAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt

Protein Analysis

303

Amino Acids

32.97

Weight (kDa)

8.24

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33040
fragaria_vesca	FvH4_5g13860 FvH4_5g13860 FvH4_5g13860
malus_domestica	MD06G1202600.v1.1 MD14G1211800.v1.1
prunus_persica	Prupe.5G204800_v2.0.a1
pyrus_communis	pycom06g17860 pycom14g17540
rosa_chinensis	RchiOBHm_Chr7g0183071
rosa_laevigata	RLG00000005081
rosa_multiflora	Rmu_ssc0000111.1_g000004
rosa_roxburghii	Rroxscaffold_3G00270790
rosa_rugosa	Rorug06G0452400 Rorug06G0452500
rosa_samantha	Rh7AG055800 Rh7BG055100 Rh7CG056600 Rh7DG055300
rosa_wichuraiana	Rw7G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	834
Acc36I	ACCTGC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	2 cut(s)	6, 731
AclWI	GGATC	1 cut(s)	9
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	181, 691
AcuI	CTGAAG	4 cut(s)	255, 508, 636, 671
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	8 cut(s)	69, 167, 340, 463, 502, 538, 659, 727
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	7 cut(s)	154, 176, 430, 488, 620, 631, 786
AluI	AGCT	7 cut(s)	154, 176, 430, 488, 620, 631, 786
Alw26I	GTCTC	3 cut(s)	353, 562, 662
AlwI	GGATC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	593
AoxI	GGCC	3 cut(s)	3, 190, 324
ApeKI	GCWGC	2 cut(s)	143, 199
ApoI	RAATTY	2 cut(s)	181, 691
Asp718I	GGTACC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	233, 647, 677
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	347
BaeI	ACNNNNGTAYC	2 cut(s)	459, 492
BanI	GGYRCC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	526
BbvI	GCAGC	2 cut(s)	155, 211
BccI	CCATC	3 cut(s)	29, 130, 272
BciT130I	CCWGG	1 cut(s)	473
BcoDI	GTCTC	3 cut(s)	353, 562, 662
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	6, 144, 200
BlsI	GCNGC	3 cut(s)	7, 145, 201
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	4 cut(s)	508, 798, 860, 899
BpiI	GAAGAC	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	772
BsaJI	CCNNGG	3 cut(s)	33, 471, 777
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	903
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	3 cut(s)	33, 471, 777
BseGI	GGATG	4 cut(s)	24, 96, 256, 774
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	3 cut(s)	321, 410, 432
BseNI	ACTGG	1 cut(s)	903
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	155, 211
BseYI	CCCAGC	2 cut(s)	28, 230
BshFI	GGCC	3 cut(s)	5, 192, 326
BshNI	GGYRCC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	2 cut(s)	88, 801
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	3 cut(s)	353, 562, 662
BsmBI	CGTCTC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	3 cut(s)	5, 192, 326
BsoBI	CYCGRG	1 cut(s)	593
Bsp143I	GATC	2 cut(s)	14, 814
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	2 cut(s)	6, 731
BspANI	GGCC	3 cut(s)	5, 192, 326
BspCNI	CTCAG	3 cut(s)	320, 409, 433
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	903
BssECI	CCNNGG	3 cut(s)	33, 471, 777
BssMI	GATC	2 cut(s)	14, 814
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	2 cut(s)	574, 583
Bst6I	CTCTTC	2 cut(s)	89, 274
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	5 cut(s)	307, 396, 414, 441, 640
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	4 cut(s)	24, 96, 256, 774
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	17, 817
BstMAI	GTCTC	3 cut(s)	353, 562, 662
BstMBI	GATC	2 cut(s)	14, 814
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	155, 211
BstV2I	GAAGAC	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	5, 192, 326
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	4 cut(s)	24, 96, 256, 774
BtsI	GCAGTG	1 cut(s)	757
BtsIMutI	CAGTG	2 cut(s)	757, 896
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	748
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	347
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	3 cut(s)	714, 721, 778
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	5 cut(s)	307, 396, 414, 441, 640
DpnI	GATC	2 cut(s)	16, 816
DpnII	GATC	2 cut(s)	14, 814
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	89, 274
EarI	CTCTTC	2 cut(s)	89, 274
Eco130I	CCWWGG	1 cut(s)	777
Eco147I	AGGCCT	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	4 cut(s)	255, 508, 636, 671
Eco88I	CYCGRG	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	777
EcoT22I	ATGCAT	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	777
Esp3I	CGTCTC	1 cut(s)	562
FaeI	CATG	3 cut(s)	717, 724, 781
FatI	CATG	3 cut(s)	713, 720, 777
Fnu4HI	GCNGC	3 cut(s)	6, 144, 200
FokI	GGATG	4 cut(s)	11, 103, 263, 781
Fsp4HI	GCNGC	3 cut(s)	6, 144, 200
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	3 cut(s)	6, 144, 200
GsaI	CCCAGC	2 cut(s)	32, 234
HaeIII	GGCC	3 cut(s)	5, 192, 326
HapII	CCGG	2 cut(s)	88, 801
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	717, 724, 781
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HindIII	AAGCTT	2 cut(s)	152, 629
HinfI	GANTC	6 cut(s)	403, 410, 454, 528, 611, 644
HpaII	CCGG	2 cut(s)	88, 801
HphI	GGTGA	3 cut(s)	233, 647, 677
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	6 cut(s)	14, 274, 527, 616, 679, 690
Hpy188III	TCNNGA	6 cut(s)	112, 313, 350, 407, 593, 885
Hpy8I	GTNNAC	1 cut(s)	579
HpyAV	CCTTC	4 cut(s)	241, 412, 532, 653
HpyCH4III	ACNGT	2 cut(s)	574, 583
HpyCH4V	TGCA	5 cut(s)	143, 331, 435, 448, 750
HpyF3I	CTNAG	5 cut(s)	307, 396, 414, 441, 640
Hsp92II	CATG	3 cut(s)	717, 724, 781
HspAI	GCGC	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	14, 814
LmnI	GCTCC	3 cut(s)	37, 761, 887
Lsp1109I	GCAGC	2 cut(s)	155, 211
LweI	GCATC	4 cut(s)	508, 798, 860, 899
MaeIII	GTNAC	4 cut(s)	221, 259, 407, 635
MalI	GATC	2 cut(s)	16, 816
MboI	GATC	2 cut(s)	14, 814
MboII	GAAGA	6 cut(s)	106, 115, 145, 261, 463, 526
MluCI	AATT	8 cut(s)	63, 75, 162, 181, 294, 691, 707, 866
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	2 cut(s)	657, 717
MnlI	CCTC	6 cut(s)	28, 28, 157, 316, 830, 895
Mph1103I	ATGCAT	1 cut(s)	437
MseI	TTAA	4 cut(s)	171, 243, 297, 907
MspI	CCGG	2 cut(s)	88, 801
MspR9I	CCNGG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	777
NdeII	GATC	2 cut(s)	14, 814
NlaIII	CATG	3 cut(s)	717, 724, 781
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	3 cut(s)	221, 407, 635
NsiI	ATGCAT	1 cut(s)	437
PceI	AGGCCT	1 cut(s)	326
PctI	GAATGC	1 cut(s)	748
PfeI	GAWTC	5 cut(s)	403, 454, 528, 611, 644
PflFI	GACNNNGTC	1 cut(s)	673
PkrI	GCNGC	3 cut(s)	7, 145, 201
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PsiI	TTATAA	1 cut(s)	834
Psp6I	CCWGG	1 cut(s)	471
PspFI	CCCAGC	2 cut(s)	28, 230
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	347
PsyI	GACNNNGTC	1 cut(s)	673
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SaqAI	TTAA	4 cut(s)	171, 243, 297, 907
SatI	GCNGC	3 cut(s)	6, 144, 200
Sau3AI	GATC	2 cut(s)	14, 814
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	473
SfaNI	GCATC	4 cut(s)	508, 798, 860, 899
SinI	GGWCC	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
Sse9I	AATT	8 cut(s)	63, 75, 162, 181, 294, 691, 707, 866
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	2 cut(s)	6, 731
StuI	AGGCCT	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	2 cut(s)	574, 583
TaqI	TCGA	1 cut(s)	157
TasI	AATT	8 cut(s)	63, 75, 162, 181, 294, 691, 707, 866
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	403, 454, 528, 611, 644
Tru1I	TTAA	4 cut(s)	171, 243, 297, 907
Tru9I	TTAA	4 cut(s)	171, 243, 297, 907
TscAI	CASTG	2 cut(s)	757, 903
TseFI	GTSAC	3 cut(s)	221, 407, 635
TseI	GCWGC	2 cut(s)	143, 199
Tsp45I	GTSAC	3 cut(s)	221, 407, 635
TspDTI	ATGAA	3 cut(s)	107, 146, 702
TspRI	CASTG	2 cut(s)	757, 903
Tth111I	GACNNNGTC	1 cut(s)	673
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	2 cut(s)	181, 691
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.