Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011242

Physical Location & Seq

Genomic Coordinates Forward (+)

3698995 .. 3702717

Gene Structure 3723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG055100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCCATGGCTGCTCTCAGACGAGAAGGGAGGCGTTTCGCCATCTCCCCCAATCCAATCGCCGCCGTCCGATCCTCCATCTCCCCCGCCGAGGAGCAGGCCCCTCTGGGAGTACGCTCGATTTCAACTCAAATCGTGAGAAACCGGATGAAGAGTGTTAAGAGTATCCAAAAAATTACAAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTGCGAGCAATTCAATCCAAAGCTGAAAATTCTCGTGGCCTGTGGCAGCCTTTCACAGCACTTCTTGGCGACTCCCCCAGTGTCGAAGTTAAGAAGGATGTTATTGTTACCATCTCTTCAGACAAAGGTTTATGTGGTGGAATCAACTCTACTTCAGTCAAAATAAGCAAGGCATTGAACAAGTTGACTGCTGGTCCTGACAAAGAAACAAAATATGTAATTTTGGGGGAAAAAGCAAAAGCTCAATTGATTCGTGACTCAAAGAAGGACATTGAGCTAAACATAACTGAGTTGCAGAAGAATCCTTTGAACTATGCCCAGGTATCTGTCATAGCTGACGACATTTTAAAAAATGTTGAATACGATGCTTTGAGAGTTGTCTTCAACAAATTTCAGTCAGTCGTCTCATATCTGCCAACTGTTTCTACTGTATTATCTCCAGAGGTTGTGGAGAAAGAGTCTGAAGCTGGTGGAAAGCTTGGTGACCTAGATTCGTATGAGGTTGAAGGTGGCGAGACAAAGTCAGAAATTCTACAGAATCTGACAGAGTTCCAATTTTCTTGTGTCTTGTTCAATGGGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCCAGGATGTCTGCCATGGACAGCTCAAGCAGAAATGCCGGAGAGATGCTTGATCGCCTCACACTCTCTTACAACAGAACCCGTCAAGCAGCTATCACCACAGAATTGATCGAGATTATATCTGGAGCATCAGCACTGGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt

Protein Analysis

321

Amino Acids

34.84

Weight (kDa)

8.8

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt	PF00231	44 - 319	1.3e-75	ATP synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33040
fragaria_vesca	FvH4_5g13860 FvH4_5g13860 FvH4_5g13860
malus_domestica	MD06G1202600.v1.1 MD14G1211800.v1.1
prunus_persica	Prupe.5G204800_v2.0.a1
pyrus_communis	pycom06g17860 pycom14g17540
rosa_chinensis	RchiOBHm_Chr7g0183071
rosa_laevigata	RLG00000005081
rosa_multiflora	Rmu_ssc0000111.1_g000004
rosa_roxburghii	Rroxscaffold_3G00270790
rosa_rugosa	Rorug06G0452400 Rorug06G0452500
rosa_samantha	Rh7AG055800 Rh7BG055100 Rh7CG056600 Rh7DG055300
rosa_wichuraiana	Rw7G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	63, 87
AclWI	GGATC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	238, 599, 738
AcuI	CTGAAG	3 cut(s)	312, 348, 693
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	8 cut(s)	126, 224, 388, 520, 569, 595, 716, 784
AhdI	GACNNNNNGTC	1 cut(s)	402
AjnI	CCWGG	2 cut(s)	528, 821
AluBI	AGCT	9 cut(s)	211, 233, 452, 487, 545, 677, 688, 843, 911
AluI	AGCT	9 cut(s)	211, 233, 452, 487, 545, 677, 688, 843, 911
Alw26I	GTCTC	2 cut(s)	619, 719
AlwI	GGATC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	751
AoxI	GGCC	3 cut(s)	3, 99, 247
ApeKI	GCWGC	5 cut(s)	11, 200, 211, 256, 908
ApoI	RAATTY	3 cut(s)	238, 599, 738
AspS9I	GGNCC	2 cut(s)	100, 404
AsuHPI	GGTGA	2 cut(s)	704, 907
AvaII	GGWCC	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	583
BbvI	GCAGC	4 cut(s)	198, 212, 268, 920
BccI	CCATC	4 cut(s)	50, 86, 187, 329
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	530, 823
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	619, 719
BfaI	CTAG	2 cut(s)	698, 964
BfmI	CTRYAG	1 cut(s)	743
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	6 cut(s)	12, 63, 201, 212, 257, 909
BlsI	GCNGC	6 cut(s)	13, 64, 202, 213, 258, 910
Bme1390I	CCNGG	2 cut(s)	530, 823
Bme18I	GGWCC	1 cut(s)	404
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmgT120I	GGNCC	2 cut(s)	100, 404
BmiI	GGNNCC	2 cut(s)	102, 820
BmrFI	CCNGG	2 cut(s)	530, 823
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	3 cut(s)	565, 855, 956
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	583
BpmI	CTGGAG	2 cut(s)	633, 963
BpuEI	CTTGAG	1 cut(s)	829
BsaJI	CCNNGG	4 cut(s)	6, 90, 528, 834
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	288, 960
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	530, 823
BseDI	CCNNGG	4 cut(s)	6, 90, 528, 834
BseGI	GGATG	3 cut(s)	153, 313, 831
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	31, 489
BseNI	ACTGG	2 cut(s)	288, 960
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	4 cut(s)	198, 212, 268, 920
BshFI	GGCC	3 cut(s)	5, 101, 249
BsiSI	CCGG	2 cut(s)	145, 858
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	619, 719
BsmBI	CGTCTC	1 cut(s)	619
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	3 cut(s)	5, 101, 249
Bsp143I	GATC	3 cut(s)	71, 871, 927
Bsp19I	CCATGG	2 cut(s)	6, 834
BspACI	CCGC	2 cut(s)	63, 87
BspANI	GGCC	3 cut(s)	5, 101, 249
BspCNI	CTCAG	2 cut(s)	30, 490
BspLI	GGNNCC	2 cut(s)	102, 820
BspPI	GGATC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	288, 960
BssECI	CCNNGG	4 cut(s)	6, 90, 528, 834
BssMI	GATC	3 cut(s)	71, 871, 927
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	6, 834
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	530, 823
Bst4CI	ACNGT	2 cut(s)	631, 640
Bst6I	CTCTTC	2 cut(s)	146, 331
BstC8I	GCNNGC	3 cut(s)	99, 216, 805
BstDEI	CTNAG	2 cut(s)	17, 498
BstDSI	CCRYGG	2 cut(s)	6, 834
BstEII	GGTNACC	1 cut(s)	692
BstF5I	GGATG	3 cut(s)	153, 313, 831
BstKTI	GATC	3 cut(s)	74, 874, 930
BstMAI	GTCTC	2 cut(s)	619, 719
BstMBI	GATC	3 cut(s)	71, 871, 927
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	530, 823
BstPI	GGTNACC	1 cut(s)	692
BstSCI	CCNGG	2 cut(s)	528, 821
BstSFI	CTRYAG	1 cut(s)	743
BstV1I	GCAGC	4 cut(s)	198, 212, 268, 920
BstV2I	GAAGAC	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	5, 101, 249
BtgI	CCRYGG	2 cut(s)	6, 834
BtsCI	GGATG	3 cut(s)	153, 313, 831
BtsI	GCAGTG	1 cut(s)	814
BtsIMutI	CAGTG	3 cut(s)	295, 814, 953
Cac8I	GCNNGC	3 cut(s)	99, 216, 805
CaiI	CAGNNNCTG	1 cut(s)	751
Cfr13I	GGNCC	2 cut(s)	100, 404
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	2 cut(s)	7, 835
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	2 cut(s)	17, 498
DpnI	GATC	3 cut(s)	73, 873, 929
DpnII	GATC	3 cut(s)	71, 871, 927
DraI	TTTAAA	1 cut(s)	558
DriI	GACNNNNNGTC	1 cut(s)	402
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	146, 331
Eam1105I	GACNNNNNGTC	1 cut(s)	402
EarI	CTCTTC	2 cut(s)	146, 331
Eco130I	CCWWGG	2 cut(s)	6, 834
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	3 cut(s)	312, 348, 693
Eco91I	GGTNACC	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	692
EcoRII	CCWGG	2 cut(s)	528, 821
EcoT14I	CCWWGG	2 cut(s)	6, 834
ErhI	CCWWGG	2 cut(s)	6, 834
Esp3I	CGTCTC	1 cut(s)	619
FaeI	CATG	2 cut(s)	10, 838
FatI	CATG	2 cut(s)	6, 834
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	6 cut(s)	12, 63, 201, 212, 257, 909
FokI	GGATG	3 cut(s)	160, 320, 838
Fsp4HI	GCNGC	6 cut(s)	12, 63, 201, 212, 257, 909
FspBI	CTAG	2 cut(s)	698, 964
GluI	GCNGC	6 cut(s)	12, 63, 201, 212, 257, 909
GsuI	CTGGAG	2 cut(s)	633, 963
HaeIII	GGCC	3 cut(s)	5, 101, 249
HapII	CCGG	2 cut(s)	145, 858
Hin1II	CATG	2 cut(s)	10, 838
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	8 cut(s)	281, 351, 460, 467, 511, 668, 701, 748
HpaII	CCGG	2 cut(s)	145, 858
HphI	GGTGA	2 cut(s)	704, 907
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	6 cut(s)	20, 71, 331, 673, 736, 753
Hpy188III	TCNNGA	6 cut(s)	136, 407, 464, 650, 931, 942
Hpy8I	GTNNAC	1 cut(s)	396
HpyAV	CCTTC	4 cut(s)	20, 298, 469, 710
HpyCH4III	ACNGT	2 cut(s)	631, 640
HpyCH4V	TGCA	3 cut(s)	200, 505, 807
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	17, 498
Hsp92II	CATG	2 cut(s)	10, 838
Kzo9I	GATC	3 cut(s)	71, 871, 927
LmnI	GCTCC	3 cut(s)	94, 818, 944
Lsp1109I	GCAGC	4 cut(s)	198, 212, 268, 920
LweI	GCATC	3 cut(s)	565, 855, 956
MaeI	CTAG	2 cut(s)	698, 964
MaeIII	GTNAC	3 cut(s)	316, 464, 692
MalI	GATC	3 cut(s)	73, 873, 929
MboI	GATC	3 cut(s)	71, 871, 927
MboII	GAAGA	5 cut(s)	163, 202, 318, 520, 583
MfeI	CAATTG	1 cut(s)	455
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	174, 219, 238, 429, 455, 599, 738, 764, 923
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	275, 461, 677
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	9 cut(s)	24, 85, 85, 114, 214, 646, 703, 887, 952
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	159, 300, 557
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	145, 858
MspR9I	CCNGG	2 cut(s)	530, 823
MunI	CAATTG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	2 cut(s)	530, 823
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	2 cut(s)	6, 834
NdeII	GATC	3 cut(s)	71, 871, 927
NlaIII	CATG	2 cut(s)	10, 838
NlaIV	GGNNCC	2 cut(s)	102, 820
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	464, 692
PctI	GAATGC	1 cut(s)	805
PfeI	GAWTC	5 cut(s)	351, 460, 511, 701, 748
PflFI	GACNNNGTC	1 cut(s)	730
PkrI	GCNGC	6 cut(s)	13, 64, 202, 213, 258, 910
PleI	GAGTC	3 cut(s)	275, 461, 676
PpsI	GAGTC	3 cut(s)	275, 461, 676
Psp6I	CCWGG	2 cut(s)	528, 821
PspEI	GGTNACC	1 cut(s)	692
PspGI	CCWGG	2 cut(s)	528, 821
PspN4I	GGNNCC	2 cut(s)	102, 820
PspPI	GGNCC	2 cut(s)	100, 404
PstNI	CAGNNNCTG	1 cut(s)	751
PsyI	GACNNNGTC	1 cut(s)	730
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	159, 300, 557
SatI	GCNGC	6 cut(s)	12, 63, 201, 212, 257, 909
Sau3AI	GATC	3 cut(s)	71, 871, 927
Sau96I	GGNCC	2 cut(s)	100, 404
SchI	GAGTC	3 cut(s)	275, 461, 677
ScrFI	CCNGG	2 cut(s)	530, 823
SfaNI	GCATC	3 cut(s)	565, 855, 956
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	9 cut(s)	174, 219, 238, 429, 455, 599, 738, 764, 923
SsiI	CCGC	2 cut(s)	63, 87
SspMI	CTAG	2 cut(s)	698, 964
StyD4I	CCNGG	2 cut(s)	528, 821
StyI	CCWWGG	2 cut(s)	6, 834
TaaI	ACNGT	2 cut(s)	631, 640
TaqI	TCGA	3 cut(s)	119, 294, 930
TasI	AATT	9 cut(s)	174, 219, 238, 429, 455, 599, 738, 764, 923
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	5 cut(s)	351, 460, 511, 701, 748
Tru1I	TTAA	3 cut(s)	159, 300, 557
Tru9I	TTAA	3 cut(s)	159, 300, 557
TscAI	CASTG	3 cut(s)	295, 814, 960
TseFI	GTSAC	2 cut(s)	464, 692
TseI	GCWGC	5 cut(s)	11, 200, 211, 256, 908
Tsp45I	GTSAC	2 cut(s)	464, 692
TspDTI	ATGAA	2 cut(s)	164, 203
TspRI	CASTG	3 cut(s)	295, 814, 960
Tth111I	GACNNNGTC	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	3 cut(s)	238, 599, 738
XspI	CTAG	2 cut(s)	698, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.