FvH4_5g13860

ATP synthase subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011242
Physical Location & Seq
Reverse (-)
7820068 .. 7824133
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13860.t3

Sequence Viewer

Length: 777 bp
ATGGCCATGGCTGCTCTCAGACGCGAAGGGAGGCGTTTCGCCGTCTCCCCCAGTCCAATCGCCGCCGTCCGATCCTCCATCTTCCCCGCCGAGGAGCAGGGCCCACTTGGAGTACGCTCAATTTCAACTCAAATCGTGAGAAACCGGATGAAGAGTGTTAAGAGTATTCAAAAGATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGCTGCGAGCTATTCAATCCAAAGCTGAGAATTCTCGTGGCCTGTGGAAGCCTTTCACAGCACTTCTTGGCGACACCCCCAGTGTCAAAGTTAAGAAGGATGTTATTGTTACCGTCTCTTCAGACAAAGGTTTATGTGGTGGAATCAACTCTACTTCGGTCAAAATAAGCAAGGCAATGCACAAGTTGAATGCCGGTCCTGACAAAGAAACAAAATATGTAATTTTGGGGGAAAAGGCAAAAGCTCAATTGATTCGTGACTCAAAGAAGGACATTGAGCTAAGCATAACTGAGTTGCAGAAGAATCCTTTGAACTACGCCCAGGTATCTGTCATAGCTGACGACATTTTAAAAAATGTGGAATACGATGCTTTGAGAGTTGTCTTCAATAAATTTCAGTCAGTTGTTGCATTTCTGCCAACTGTTTCTACTGTATTATCTCCAGAGGTTGTGGAGAAAGAGTCTGAAGCTGGTGGAACGCTTGGTGACCTAGATTCGTATGAGGTTGAAGGTGGCGAGTCAAAGTCAGAAATTCTACAGAATCTGACAGAGTTCCAATTTTCTTGTTGA

Protein Analysis

259

Amino Acids

28.09

Weight (kDa)

9.44

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 44 - 319 8e-75 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33040
fragaria_vesca FvH4_5g13860 FvH4_5g13860 FvH4_5g13860
malus_domestica MD06G1202600.v1.1 MD14G1211800.v1.1
prunus_persica Prupe.5G204800_v2.0.a1
pyrus_communis pycom06g17860 pycom14g17540
rosa_chinensis RchiOBHm_Chr7g0183071
rosa_laevigata RLG00000005081
rosa_multiflora Rmu_ssc0000111.1_g000004
rosa_roxburghii Rroxscaffold_3G00270790
rosa_rugosa Rorug06G0452400 Rorug06G0452500
rosa_samantha Rh7AG055800 Rh7BG055100 Rh7CG056600 Rh7DG055300
rosa_wichuraiana Rw7G004540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 63, 87
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 238, 599, 738
AcuI CTGAAG 2 cut(s) 312, 693
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 7 cut(s) 126, 170, 224, 397, 520, 595, 716
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 7 cut(s) 211, 218, 233, 452, 487, 545, 677
AluI AGCT 7 cut(s) 211, 218, 233, 452, 487, 545, 677
Alw26I GTCTC 2 cut(s) 49, 328
AlwI GGATC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 751
AoxI GGCC 3 cut(s) 3, 100, 247
ApaI GGGCCC 1 cut(s) 104
ApeKI GCWGC 3 cut(s) 11, 200, 211
ApoI RAATTY 3 cut(s) 238, 599, 738
Asp700I GAANNNNTTC 1 cut(s) 260
AspS9I GGNCC 3 cut(s) 100, 101, 404
AsuHPI GGTGA 1 cut(s) 704
AvaII GGWCC 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 104
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 104
BauI CACGAG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 583
BbvI GCAGC 2 cut(s) 198, 212
BccI CCATC 2 cut(s) 86, 187
BceAI ACGGC 2 cut(s) 26, 50
BciT130I CCWGG 1 cut(s) 530
BcoDI GTCTC 2 cut(s) 49, 328
BfaI CTAG 1 cut(s) 698
BfmI CTRYAG 1 cut(s) 743
BisI GCNGC 4 cut(s) 12, 63, 201, 212
BlpI GCTNAGC 1 cut(s) 488
BlsI GCNGC 4 cut(s) 13, 64, 202, 213
Bme1390I CCNGG 1 cut(s) 530
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 3 cut(s) 100, 101, 404
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 530
BmrI ACTGGG 2 cut(s) 45, 282
BmsI GCATC 1 cut(s) 565
BmuI ACTGGG 2 cut(s) 45, 282
BpiI GAAGAC 1 cut(s) 583
BpmI CTGGAG 1 cut(s) 633
Bpu1102I GCTNAGC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 6, 90, 528
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 2 cut(s) 51, 288
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 3 cut(s) 6, 90, 528
BseGI GGATG 2 cut(s) 153, 313
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 3 cut(s) 31, 225, 489
BseNI ACTGG 2 cut(s) 51, 288
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 2 cut(s) 198, 212
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 3 cut(s) 5, 102, 249
BsiSI CCGG 2 cut(s) 145, 402
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 49, 328
BsmBI CGTCTC 2 cut(s) 49, 328
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 3 cut(s) 5, 102, 249
Bsp120I GGGCCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 71
Bsp1720I GCTNAGC 1 cut(s) 488
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 63, 87
BspANI GGCC 3 cut(s) 5, 102, 249
BspCNI CTCAG 3 cut(s) 30, 226, 490
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 401
BsrI ACTGG 2 cut(s) 51, 288
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 3 cut(s) 6, 90, 528
BssMI GATC 1 cut(s) 71
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 3 cut(s) 322, 631, 640
Bst6I CTCTTC 2 cut(s) 146, 331
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 4 cut(s) 17, 234, 488, 498
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 692
BstF5I GGATG 2 cut(s) 153, 313
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 1 cut(s) 74
BstMAI GTCTC 2 cut(s) 49, 328
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 530
BstPI GGTNACC 1 cut(s) 692
BstSCI CCNGG 1 cut(s) 528
BstSFI CTRYAG 1 cut(s) 743
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 198, 212
BstV2I GAAGAC 1 cut(s) 583
BsuRI GGCC 3 cut(s) 5, 102, 249
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 153, 313
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 751
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 3 cut(s) 100, 101, 404
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 7
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 4 cut(s) 17, 234, 488, 498
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
DraI TTTAAA 1 cut(s) 558
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 146, 331
EarI CTCTTC 2 cut(s) 146, 331
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 2 cut(s) 312, 693
Eco91I GGTNACC 1 cut(s) 692
EcoO109I RGGNCCY 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 692
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 2 cut(s) 49, 328
FaeI CATG 1 cut(s) 10
FaiI YATR 7 cut(s) 8, 188, 343, 426, 494, 542, 708
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 12, 63, 201, 212
FokI GGATG 2 cut(s) 160, 320
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 4 cut(s) 12, 63, 201, 212
FspBI CTAG 1 cut(s) 698
GluI GCNGC 4 cut(s) 12, 63, 201, 212
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 3 cut(s) 5, 102, 249
HapII CCGG 2 cut(s) 145, 402
HgaI GACGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 10
HinfI GANTC 8 cut(s) 351, 460, 467, 511, 668, 701, 725, 748
HpaII CCGG 2 cut(s) 145, 402
HphI GGTGA 1 cut(s) 704
Hpy188I TCNGA 6 cut(s) 20, 71, 331, 673, 736, 753
Hpy188III TCNNGA 4 cut(s) 136, 407, 464, 650
HpyAV CCTTC 4 cut(s) 20, 298, 469, 710
HpyCH4III ACNGT 3 cut(s) 322, 631, 640
HpyCH4V TGCA 4 cut(s) 200, 388, 505, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 17, 234, 488, 498
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 2 cut(s) 198, 212
LweI GCATC 1 cut(s) 565
MaeI CTAG 1 cut(s) 698
MaeIII GTNAC 3 cut(s) 316, 464, 692
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 6 cut(s) 73, 163, 202, 318, 520, 583
MfeI CAATTG 1 cut(s) 455
MhlI GDGCHC 1 cut(s) 104
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 120, 238, 429, 455, 599, 738, 764
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 461, 677, 734
MnlI CCTC 6 cut(s) 24, 85, 85, 214, 646, 703
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 159, 300, 557
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 145, 402
MspR9I CCNGG 1 cut(s) 530
MunI CAATTG 1 cut(s) 455
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 1 cut(s) 530
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 71
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 102
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 2 cut(s) 464, 692
PctI GAATGC 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 5 cut(s) 351, 460, 511, 701, 748
PkrI GCNGC 4 cut(s) 13, 64, 202, 213
PleI GAGTC 3 cut(s) 461, 676, 733
PpsI GAGTC 3 cut(s) 461, 676, 733
Psp6I CCWGG 1 cut(s) 528
PspEI GGTNACC 1 cut(s) 692
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 1 cut(s) 102
PspOMI GGGCCC 1 cut(s) 100
PspPI GGNCC 3 cut(s) 100, 101, 404
PstNI CAGNNNCTG 1 cut(s) 751
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 159, 300, 557
SatI GCNGC 4 cut(s) 12, 63, 201, 212
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 3 cut(s) 100, 101, 404
SchI GAGTC 3 cut(s) 461, 677, 734
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 1 cut(s) 743
SinI GGWCC 1 cut(s) 404
Sse9I AATT 7 cut(s) 120, 238, 429, 455, 599, 738, 764
SsiI CCGC 2 cut(s) 63, 87
SspMI CTAG 1 cut(s) 698
StyD4I CCNGG 1 cut(s) 528
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 3 cut(s) 322, 631, 640
TaqII GACCGA 1 cut(s) 355
TasI AATT 7 cut(s) 120, 238, 429, 455, 599, 738, 764
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 5 cut(s) 351, 460, 511, 701, 748
Tru1I TTAA 3 cut(s) 159, 300, 557
Tru9I TTAA 3 cut(s) 159, 300, 557
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 2 cut(s) 464, 692
TseI GCWGC 3 cut(s) 11, 200, 211
Tsp45I GTSAC 2 cut(s) 464, 692
TspDTI ATGAA 2 cut(s) 164, 203
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 3 cut(s) 238, 599, 738
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.