Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008251

Physical Location & Seq

Genomic Coordinates Forward (+)

14518344 .. 14522622

Gene Structure 4279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGGCGGATTCTCAGCCAATCACGCCTGGTCAGGTTTCGTTTCTACTCGGAGTCATTCCTGTCTTCATAGCATGGATTTACTCAGAGTTTCTAGAGTATAAGAGGTCTTCATTGCACTCTAAAGTTCATTCAGATAATAATTTGGTTGAACTTGGTGAGGTAAAAAACAAGGAAGATGAAGGAGTAGTTTTACTTGAAGGAGGTCTTCCAAGATCAGTCTCTACAAAGTTTTATAACTCACCTATCAAAACAAACTTGATTAGATTTCTGACGCTGGAAGACTCTTTCTTGATTGAAAATCGAGCAACCTTGAGAGCGATGGCTGAGTTTGGGGCTATTCTTTTTTACTTTTATATTAGTGATCGAACAAGCTTGCTTGGAGAGTCTAAAAAGAATTACAACAGAGATCTTTTCCTCTTTCTCTACTGTCTTCTCATCATAGTTTCAGCCATGACATCCTTGAAGAAACACAATGACAAATCACCTATAACAGGAAAATCCATTCTCTATCTTAATCGTCACCAGACTGAAGAGTGGAAGGGATGGATGCAGGTTCTATTTCTTATGTATCATTACTTTGCTGCGGCTGAGATATATAATGCAATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGATGATGTGGCGTCTTAACTTATTTGTGGCGTTTAGCTGCATTATTCTCAATAATGATTATATGCTGTACTACATCTGTCCAATGCACACTCTGTTCACTCTTATGGTGTATGGAGCCCTTGGTATCTTCAGTCGATATAACGAAATACCATCAGTAATGGCTTTGAAGATTGCTTCATGCTTTCTCGTGGTTATCGTGATGTGGGAGATTCCTGGCGTTTTTGAGATTTTCTGGAGTCCTTTAACATTCTTACTGGGATACACTGATCCAGCTAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTGTAGAGAGATGGATGGAGAAATTGGAGGAGTGTGATGCCAAGAGAAAGATGTCAATAAAGACAAGCATAATTGCAATTTCCTCATTTGTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCATCCCTACACATCGTGGATTCCAATAACCGTCTACATCTGTCTGCGAAATTCTACACAACAGCTGCGTAATTTCTCCATGACACTATTTGCGTGGCTCGGCAAGATTACTCTGGAAACCTATATTTCTCAGTTTCACATCTGGTTAAGATCGAATGTGCCAAATGGACAGCCTAAGTGGCTATTATGCATTATTCCAGAATACCCAATGCTCAACTTCATGCTCGTCACGGCCATCTATGTCTTGGTGTCCCACCGACTTTTCGAGCTTACAAACACGTTAAAGTCTGTTTTCATACCAACAAAAGACGACAAGAGGCTGCTCCACAATGTTCTCGCTGGAGCTGCCATCTCGTTCTGTTTATATTTAACATCTCTCATTCTTCTCCAGATCCCACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

540

Amino Acids

63.33

Weight (kDa)

8.81

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cas1_AcylT	PF07779	101 - 513	7.7e-91	10 TM Acyl Transferase domain found in Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29890 AT1G29890 AT1G29890 AT2G34410 AT2G34410 AT2G34410 AT5G46340 AT5G46340
fragaria_vesca	FvH4_3g06190
malus_domestica	MD05G1290200.v1.1 MD10G1266300.v1.1
prunus_persica	Prupe.4G075500_v2.0.a1 Prupe.4G075500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013141
rosa_laevigata	RLG00000031992
rosa_multiflora	Rmu_sc0004521.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063440
rosa_rugosa	Rorug05G0007400
rosa_samantha	Rh5AG101700 Rh5BG098100 Rh5CG110200 Rh5DG097300
rosa_wichuraiana	Rw5G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	1254
AciI	CCGC	3 cut(s)	5, 584, 1027
AclWI	GGATC	3 cut(s)	962, 1046, 1606
AcoI	YGGCCR	1 cut(s)	1452
AcsI	RAATTY	1 cut(s)	1270
AcuI	CTGAAG	3 cut(s)	549, 814, 994
AcyI	GRCGYC	1 cut(s)	712
AdeI	CACNNNGTG	1 cut(s)	1236
AfaI	GTAC	1 cut(s)	770
AfiI	CCNNNNNNNGG	2 cut(s)	491, 630
AflIII	ACRYGT	1 cut(s)	1497
AgsI	TTSAA	5 cut(s)	149, 197, 296, 463, 868
AjnI	CCWGG	2 cut(s)	25, 913
AluBI	AGCT	7 cut(s)	372, 738, 974, 1195, 1285, 1489, 1565
AluI	AGCT	7 cut(s)	372, 738, 974, 1195, 1285, 1489, 1565
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	3 cut(s)	962, 1046, 1606
AoxI	GGCC	1 cut(s)	1452
ApeKI	GCWGC	6 cut(s)	581, 620, 738, 1285, 1540, 1565
ApoI	RAATTY	1 cut(s)	1270
AsuHPI	GGTGA	4 cut(s)	167, 231, 474, 512
BanII	GRGCYC	1 cut(s)	820
BauI	CACGAG	1 cut(s)	887
BbsI	GAAGAC	5 cut(s)	55, 99, 197, 285, 422
BbvI	GCAGC	6 cut(s)	568, 607, 725, 1272, 1527, 1552
BccI	CCATC	8 cut(s)	313, 537, 859, 1074, 1077, 1081, 1463, 1577
BceAI	ACGGC	1 cut(s)	1467
BciT130I	CCWGG	2 cut(s)	27, 915
BciVI	GTATCC	1 cut(s)	953
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	92, 686
BfmI	CTRYAG	1 cut(s)	1074
BfuAI	ACCTGC	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	953
BglI	GCCNNNNNGGC	1 cut(s)	1399
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	7 cut(s)	582, 585, 621, 739, 1286, 1541, 1566
BlsI	GCNGC	7 cut(s)	583, 586, 622, 740, 1287, 1542, 1567
Bme1390I	CCNGG	2 cut(s)	27, 915
BmiI	GGNNCC	1 cut(s)	817
BmrFI	CCNGG	2 cut(s)	27, 915
BmrI	ACTGGG	2 cut(s)	648, 965
BmsI	GCATC	2 cut(s)	537, 1099
BmuI	ACTGGG	2 cut(s)	648, 965
BpiI	GAAGAC	5 cut(s)	55, 99, 197, 285, 422
BpmI	CTGGAG	3 cut(s)	955, 1581, 1592
BpuEI	CTTGAG	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	712
BsaJI	CCNNGG	1 cut(s)	820
Bsc4I	CCNNNNNNNGG	2 cut(s)	491, 630
Bse1I	ACTGG	2 cut(s)	643, 960
Bse3DI	GCAATG	2 cut(s)	110, 615
BseBI	CCWGG	2 cut(s)	27, 915
BseDI	CCNNGG	1 cut(s)	820
BseGI	GGATG	7 cut(s)	455, 548, 552, 639, 1066, 1092, 1222
BseLI	CCNNNNNNNGG	2 cut(s)	491, 630
BseMI	GCAATG	2 cut(s)	110, 615
BseMII	CTCAG	6 cut(s)	26, 96, 315, 579, 713, 1364
BseNI	ACTGG	2 cut(s)	643, 960
BseRI	GAGGAG	1 cut(s)	1115
BseXI	GCAGC	6 cut(s)	568, 607, 725, 1272, 1527, 1552
BshFI	GGCC	1 cut(s)	1454
BslFI	GGGAC	1 cut(s)	1456
BslI	CCNNNNNNNGG	2 cut(s)	491, 630
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	1456
BsnI	GGCC	1 cut(s)	1454
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp143I	GATC	8 cut(s)	212, 361, 406, 967, 1013, 1038, 1370, 1611
BspACI	CCGC	3 cut(s)	5, 584, 1027
BspANI	GGCC	1 cut(s)	1454
BspCNI	CTCAG	6 cut(s)	25, 95, 316, 580, 712, 1363
BspLI	GGNNCC	1 cut(s)	817
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	3 cut(s)	962, 1046, 1606
BsrDI	GCAATG	2 cut(s)	110, 615
BsrI	ACTGG	2 cut(s)	643, 960
BssECI	CCNNGG	1 cut(s)	820
BssMI	GATC	8 cut(s)	212, 361, 406, 967, 1013, 1038, 1370, 1611
BssNI	GRCGYC	1 cut(s)	712
BssSI	CACGAG	1 cut(s)	887
BssT1I	CCWWGG	1 cut(s)	820
Bst2BI	CACGAG	1 cut(s)	887
Bst2UI	CCWGG	2 cut(s)	27, 915
Bst4CI	ACNGT	3 cut(s)	428, 1075, 1252
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	1 cut(s)	712
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	7 cut(s)	12, 82, 324, 588, 699, 1350, 1395
BstEII	GGTNACC	1 cut(s)	1166
BstENI	CCTNNNNNAGG	1 cut(s)	489
BstF5I	GGATG	7 cut(s)	455, 548, 552, 639, 1066, 1092, 1222
BstKTI	GATC	8 cut(s)	215, 364, 409, 970, 1016, 1041, 1373, 1614
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	8 cut(s)	212, 361, 406, 967, 1013, 1038, 1370, 1611
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 1399, 1565
BstNI	CCWGG	2 cut(s)	27, 915
BstPI	GGTNACC	1 cut(s)	1166
BstSCI	CCNGG	2 cut(s)	25, 913
BstSFI	CTRYAG	1 cut(s)	1074
BstV1I	GCAGC	6 cut(s)	568, 607, 725, 1272, 1527, 1552
BstV2I	GAAGAC	5 cut(s)	55, 99, 197, 285, 422
BstX2I	RGATCY	2 cut(s)	406, 1611
BstYI	RGATCY	2 cut(s)	406, 1611
BsuI	GTATCC	1 cut(s)	953
BsuRI	GGCC	1 cut(s)	1454
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	7 cut(s)	455, 548, 552, 639, 1066, 1092, 1222
BtsIMutI	CAGTG	2 cut(s)	963, 1071
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	374
CseI	GACGC	2 cut(s)	280, 701
Csp6I	GTAC	1 cut(s)	769
CviAII	CATG	6 cut(s)	72, 451, 879, 998, 1300, 1441
CviQI	GTAC	1 cut(s)	769
DdeI	CTNAG	7 cut(s)	12, 82, 324, 588, 699, 1350, 1395
DpnI	GATC	8 cut(s)	214, 363, 408, 969, 1015, 1040, 1372, 1613
DpnII	GATC	8 cut(s)	212, 361, 406, 967, 1013, 1038, 1370, 1611
DraIII	CACNNNGTG	1 cut(s)	1236
EaeI	YGGCCR	1 cut(s)	1452
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	820
Eco24I	GRGCYC	1 cut(s)	820
Eco57I	CTGAAG	3 cut(s)	549, 814, 994
Eco91I	GGTNACC	1 cut(s)	1166
EcoNI	CCTNNNNNAGG	1 cut(s)	489
EcoO65I	GGTNACC	1 cut(s)	1166
EcoRII	CCWGG	2 cut(s)	25, 913
EcoT14I	CCWWGG	1 cut(s)	820
EcoT22I	ATGCAT	1 cut(s)	1412
EcoT38I	GRGCYC	1 cut(s)	820
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	6 cut(s)	75, 454, 882, 1001, 1303, 1444
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	1456
FatI	CATG	6 cut(s)	71, 450, 878, 997, 1299, 1440
FauNDI	CATATG	1 cut(s)	1034
FblI	GTMKAC	1 cut(s)	1254
Fnu4HI	GCNGC	7 cut(s)	582, 585, 621, 739, 1286, 1541, 1566
FokI	GGATG	7 cut(s)	442, 555, 559, 646, 1053, 1099, 1209
FriOI	GRGCYC	1 cut(s)	820
Fsp4HI	GCNGC	7 cut(s)	582, 585, 621, 739, 1286, 1541, 1566
FspBI	CTAG	2 cut(s)	92, 686
GluI	GCNGC	7 cut(s)	582, 585, 621, 739, 1286, 1541, 1566
GsuI	CTGGAG	3 cut(s)	955, 1581, 1592
HaeIII	GGCC	1 cut(s)	1454
HgaI	GACGC	2 cut(s)	280, 701
Hin1I	GRCGYC	1 cut(s)	712
Hin1II	CATG	6 cut(s)	75, 454, 882, 1001, 1303, 1444
HindIII	AAGCTT	2 cut(s)	370, 1193
HinfI	GANTC	7 cut(s)	8, 51, 281, 383, 910, 937, 1240
HphI	GGTGA	4 cut(s)	167, 231, 474, 512
Hpy166II	GTNNAC	2 cut(s)	798, 1255
Hpy188I	TCNGA	7 cut(s)	50, 85, 133, 270, 671, 702, 1013
Hpy188III	TCNNGA	9 cut(s)	92, 289, 631, 898, 934, 1017, 1334, 1418, 1609
Hpy8I	GTNNAC	2 cut(s)	798, 1255
HpyAV	CCTTC	3 cut(s)	173, 191, 532
HpyCH4III	ACNGT	3 cut(s)	428, 1075, 1252
HpyCH4IV	ACGT	2 cut(s)	627, 1499
HpyCH4V	TGCA	7 cut(s)	115, 550, 602, 741, 787, 1148, 1410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 1399, 1565
HpyF3I	CTNAG	7 cut(s)	12, 82, 324, 588, 699, 1350, 1395
HpySE526I	ACGT	2 cut(s)	627, 1499
Hsp92I	GRCGYC	1 cut(s)	712
Hsp92II	CATG	6 cut(s)	75, 454, 882, 1001, 1303, 1444
Kzo9I	GATC	8 cut(s)	212, 361, 406, 967, 1013, 1038, 1370, 1611
LmnI	GCTCC	3 cut(s)	815, 1548, 1562
Lsp1109I	GCAGC	6 cut(s)	568, 607, 725, 1272, 1527, 1552
LweI	GCATC	2 cut(s)	537, 1099
MaeI	CTAG	2 cut(s)	92, 686
MaeII	ACGT	2 cut(s)	627, 1499
MaeIII	GTNAC	4 cut(s)	518, 1166, 1204, 1447
MalI	GATC	8 cut(s)	214, 363, 408, 969, 1015, 1040, 1372, 1613
MboI	GATC	8 cut(s)	212, 361, 406, 967, 1013, 1038, 1370, 1611
MflI	RGATCY	2 cut(s)	406, 1611
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	7 cut(s)	139, 394, 1094, 1143, 1149, 1270, 1291
MlyI	GAGTC	4 cut(s)	60, 275, 392, 946
MnlI	CCTC	7 cut(s)	96, 151, 194, 425, 1093, 1165, 1530
Mph1103I	ATGCAT	1 cut(s)	1412
MseI	TTAA	6 cut(s)	513, 717, 944, 1367, 1502, 1589
MslI	CAYNNNNRTG	2 cut(s)	803, 1046
MspA1I	CMGCKG	1 cut(s)	1285
MspR9I	CCNGG	2 cut(s)	27, 915
MvaI	CCWGG	2 cut(s)	27, 915
MwoI	GCNNNNNNNGC	3 cut(s)	22, 1399, 1565
NdeI	CATATG	1 cut(s)	1034
NdeII	GATC	8 cut(s)	212, 361, 406, 967, 1013, 1038, 1370, 1611
NlaIII	CATG	6 cut(s)	75, 454, 882, 1001, 1303, 1444
NlaIV	GGNNCC	1 cut(s)	817
NmeAIII	GCCGAG	1 cut(s)	1299
NmuCI	GTSAC	2 cut(s)	518, 1447
NsiI	ATGCAT	1 cut(s)	1412
PcsI	WCGNNNNNNNCGW	1 cut(s)	894
PfeI	GAWTC	3 cut(s)	8, 910, 1240
PkrI	GCNGC	7 cut(s)	583, 586, 622, 740, 1287, 1542, 1567
PleI	GAGTC	4 cut(s)	59, 275, 391, 945
PpsI	GAGTC	4 cut(s)	59, 275, 391, 945
PsiI	TTATAA	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	25, 913
PspEI	GGTNACC	1 cut(s)	1166
PspGI	CCWGG	2 cut(s)	25, 913
PspN4I	GGNNCC	1 cut(s)	817
PsuI	RGATCY	2 cut(s)	406, 1611
PvuII	CAGCTG	1 cut(s)	1285
RsaI	GTAC	1 cut(s)	770
RsaNI	GTAC	1 cut(s)	769
RseI	CAYNNNNRTG	2 cut(s)	803, 1046
SaqAI	TTAA	6 cut(s)	513, 717, 944, 1367, 1502, 1589
SatI	GCNGC	7 cut(s)	582, 585, 621, 739, 1286, 1541, 1566
Sau3AI	GATC	8 cut(s)	212, 361, 406, 967, 1013, 1038, 1370, 1611
SchI	GAGTC	4 cut(s)	60, 275, 392, 946
ScrFI	CCNGG	2 cut(s)	27, 915
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	2 cut(s)	537, 1099
SfcI	CTRYAG	1 cut(s)	1074
SmiMI	CAYNNNNRTG	2 cut(s)	803, 1046
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	7 cut(s)	139, 394, 1094, 1143, 1149, 1270, 1291
SsiI	CCGC	3 cut(s)	5, 584, 1027
SspMI	CTAG	2 cut(s)	92, 686
StyD4I	CCNGG	2 cut(s)	25, 913
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	3 cut(s)	428, 1075, 1252
TaiI	ACGT	2 cut(s)	630, 1502
TaqI	TCGA	5 cut(s)	301, 364, 835, 1373, 1485
TasI	AATT	7 cut(s)	139, 394, 1094, 1143, 1149, 1270, 1291
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	3 cut(s)	8, 910, 1240
Tru1I	TTAA	6 cut(s)	513, 717, 944, 1367, 1502, 1589
Tru9I	TTAA	6 cut(s)	513, 717, 944, 1367, 1502, 1589
TscAI	CASTG	2 cut(s)	970, 1078
TseFI	GTSAC	2 cut(s)	518, 1447
TseI	GCWGC	6 cut(s)	581, 620, 738, 1285, 1540, 1565
Tsp45I	GTSAC	2 cut(s)	518, 1447
TspRI	CASTG	2 cut(s)	970, 1078
XagI	CCTNNNNNAGG	1 cut(s)	489
XapI	RAATTY	1 cut(s)	1270
XbaI	TCTAGA	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1462
XmiI	GTMKAC	1 cut(s)	1254
XspI	CTAG	2 cut(s)	92, 686
Zsp2I	ATGCAT	1 cut(s)	1412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.