Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004521.1

Orthogroup ID

OG0008251

Physical Location & Seq

Genomic Coordinates Forward (+)

4621 .. 11243

Gene Structure 6623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004521.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1725 bp

atgtttgcccaatataaagttcaggcaattgcagtgtttgtgaggcttggtttggtttacagatttagacgattcggttggacccgatttgagggatcgagaatggtggacgctgggcctgttactcctgggcaggtgtcctttttgcttggaatcatcccagtttttgtcacatggatatatgcagagtacctggaatataaaaaatcttcatctgttcctaaagctcattcagatagcaatctggttgaattgggagaggagacagtcaaggaagatgatcgggctgttttgctggaaggaggtctttcgagatcagcgtctgtaaagtttaatagttcatccatcaaactgaacttaatgaggtttctgaccatggatgactcttttctactggaacaccgactaactctaagagtgatgtctgagcttggtgcaattctgttttatttctacatatgtgaccgcacaaatatactggggtattccacaaagaactacaatagggatcttttcatctttctatgccttctcctcgtcatagtttcagcaatgacatctttgaggaaacactctgacaaatcggcattctctgggaaatccatattttacctaaatcggcatcaaacggaggaatggaaagggtggatgcaggtcctatttctattgtaccattactttgctgcaagtgagatatacaatgcaatacgtatgtttattgctgcatatgtttggatgactggatttggaaacttttcctattactacattagaaaggattttagcctcgctcgctttgctcagatgatgtggcggctgaatttttttgtggcgttttgctgtattgtccttaacaatgactatatgctatattacatctgcccaatgcacacgctcttcactcttatggtgtatggagcccttggtatctttagcaagtacaatgaaatcagatcggtaatggctatgaagattcttgcatgctttcttgtggttatcttgatttgggagattcctggggttttttacatagtttggcgtccattagctttcttattggggtatactgatcctgcaaaaccagatctccctcggctgcatgaatggcattttagatctggactggatcgctacatatggatcattggaatgatatatgcgtattatcatcctactgttgaaaaatggatggagaaattggaggaatctgataccaaaaggagagtctcaattaaagcaggaatagtttccgtcgctttatttgttggttatctgtggtatgaatgtatttacaagctggacaaggtttcatacaacaagttgcatccctacacatcatggattcccataacagtttatatatgcttacgaaactttactcagcagctgcggaactcctctttgactctctttgcgtggcttggcaagattactctggagacctatatttcacagttccacatctggttgagatcaaacacccccaacggacaacctaagtggcttctctcggtcattccaaactatcccatgctcaatttcatgttgacaactgccatctatgttttggtatctcataggcttttcgagttaacgaatacgcttaagacagtctttgtacccacaaaagacaaccaaaggctgcttcataattttcttgctggggcagccatttttacttctttgtacttcatttcattcattattgttcagatacctcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

574

Amino Acids

67.36

Weight (kDa)

9.33

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29890 AT1G29890 AT1G29890 AT2G34410 AT2G34410 AT2G34410 AT5G46340 AT5G46340
fragaria_vesca	FvH4_3g06190
malus_domestica	MD05G1290200.v1.1 MD10G1266300.v1.1
prunus_persica	Prupe.4G075500_v2.0.a1 Prupe.4G075500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013141
rosa_laevigata	RLG00000031992
rosa_multiflora	Rmu_sc0004521.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063440
rosa_rugosa	Rorug05G0007400
rosa_samantha	Rh5AG101700 Rh5BG098100 Rh5CG110200 Rh5DG097300
rosa_wichuraiana	Rw5G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	124
Acc36I	ACCTGC	2 cut(s)	124, 643
AccI	GTMKAC	1 cut(s)	1064
AciI	CCGC	3 cut(s)	466, 814, 1390
AclWI	GGATC	5 cut(s)	103, 516, 1064, 1134, 1148
AcsI	RAATTY	1 cut(s)	820
AcyI	GRCGYC	1 cut(s)	1039
AfaI	GTAC	5 cut(s)	191, 671, 941, 1620, 1688
AfiI	CCNNNNNNNGG	1 cut(s)	91
AflII	CTTAAG	1 cut(s)	1604
AgsI	TTSAA	2 cut(s)	251, 1181
AjnI	CCWGG	3 cut(s)	127, 192, 1015
AjuI	GAANNNNNNNTTGG	3 cut(s)	35, 1629, 1661
AluBI	AGCT	5 cut(s)	227, 430, 1049, 1297, 1387
AluI	AGCT	5 cut(s)	227, 430, 1049, 1297, 1387
Alw26I	GTCTC	3 cut(s)	257, 1231, 1433
AlwI	GGATC	5 cut(s)	103, 516, 1064, 1134, 1148
AlwNI	CAGNNNCTG	2 cut(s)	323, 1387
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	7 cut(s)	683, 722, 1096, 1384, 1387, 1642, 1667
ApoI	RAATTY	1 cut(s)	820
ArsI	GACNNNNNNTTYG	2 cut(s)	1209, 1241
Asp700I	GAANNNNTTC	2 cut(s)	754, 1246
AspS9I	GGNCC	3 cut(s)	81, 116, 655
AvaII	GGWCC	2 cut(s)	81, 655
BanII	GRGCYC	1 cut(s)	922
BbvI	GCAGC	7 cut(s)	670, 709, 1083, 1374, 1396, 1629, 1679
BccI	CCATC	3 cut(s)	353, 1183, 1565
BciT130I	CCWGG	3 cut(s)	129, 194, 1017
BcoDI	GTCTC	3 cut(s)	257, 1231, 1433
BfrI	CTTAAG	1 cut(s)	1604
BfuAI	ACCTGC	2 cut(s)	124, 643
BglII	AGATCT	2 cut(s)	1084, 1115
BisI	GCNGC	8 cut(s)	684, 723, 815, 1097, 1385, 1388, 1643, 1668
BlsI	GCNGC	8 cut(s)	685, 724, 816, 1098, 1386, 1389, 1644, 1669
Bme1390I	CCNGG	3 cut(s)	129, 194, 1017
Bme18I	GGWCC	2 cut(s)	81, 655
BmgT120I	GGNCC	3 cut(s)	81, 116, 655
BmiI	GGNNCC	2 cut(s)	83, 919
BmrFI	CCNGG	3 cut(s)	129, 194, 1017
BmrI	ACTGGG	2 cut(s)	155, 488
BmsI	GCATC	3 cut(s)	631, 639, 1333
BmuI	ACTGGG	2 cut(s)	155, 488
BpmI	CTGGAG	1 cut(s)	1457
BsaAI	YACGTR	1 cut(s)	710
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	1039
BsaI	GGTCTC	1 cut(s)	1433
BsaJI	CCNNGG	5 cut(s)	128, 375, 922, 1016, 1091
BsaXI	ACNNNNNCTCC	2 cut(s)	1071, 1101
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	5 cut(s)	161, 399, 483, 745, 1128
Bse3DI	GCAATG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	3 cut(s)	129, 194, 1017
BseDI	CCNNGG	5 cut(s)	128, 375, 922, 1016, 1091
BseGI	GGATG	8 cut(s)	156, 341, 385, 654, 741, 1168, 1194, 1324
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	3 cut(s)	417, 815, 1394
BseNI	ACTGG	5 cut(s)	161, 399, 483, 745, 1128
BseRI	GAGGAG	3 cut(s)	275, 524, 1387
BseXI	GCAGC	7 cut(s)	670, 709, 1083, 1374, 1396, 1629, 1679
BseYI	CCCAGC	2 cut(s)	113, 1661
BshFI	GGCC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	3 cut(s)	257, 1231, 1433
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	118
Bso31I	GGTCTC	1 cut(s)	1433
Bsp1286I	GDGCHC	1 cut(s)	922
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	3 cut(s)	466, 814, 1390
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	3 cut(s)	418, 814, 1393
BspLI	GGNNCC	2 cut(s)	83, 919
BspMI	ACCTGC	2 cut(s)	124, 643
BspPI	GGATC	5 cut(s)	103, 516, 1064, 1134, 1148
BspQI	GCTCTTC	1 cut(s)	902
BspTI	CTTAAG	1 cut(s)	1604
BspTNI	GGTCTC	1 cut(s)	1433
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	5 cut(s)	161, 399, 483, 745, 1128
BssECI	CCNNGG	5 cut(s)	128, 375, 922, 1016, 1091
BssNAI	GTATAC	1 cut(s)	1065
BssNI	GRCGYC	1 cut(s)	1039
BssT1I	CCWWGG	2 cut(s)	375, 922
Bst1107I	GTATAC	1 cut(s)	1065
Bst2UI	CCWGG	3 cut(s)	129, 194, 1017
Bst4CI	ACNGT	5 cut(s)	268, 1177, 1354, 1455, 1612
Bst6I	CTCTTC	1 cut(s)	902
BstACI	GRCGYC	1 cut(s)	1039
BstAFI	CTTAAG	1 cut(s)	1604
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	793, 982
BstDEI	CTNAG	5 cut(s)	413, 426, 801, 1380, 1497
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	8 cut(s)	156, 341, 385, 654, 741, 1168, 1194, 1324
BstMAI	GTCTC	3 cut(s)	257, 1231, 1433
BstMWI	GCNNNNNNNGC	4 cut(s)	792, 797, 1105, 1667
BstNI	CCWGG	3 cut(s)	129, 194, 1017
BstNSI	RCATGY	1 cut(s)	984
BstSCI	CCNGG	3 cut(s)	127, 192, 1015
BstSNI	TACGTA	1 cut(s)	710
BstV1I	GCAGC	7 cut(s)	670, 709, 1083, 1374, 1396, 1629, 1679
BstX2I	RGATCY	3 cut(s)	508, 1084, 1115
BstYI	RGATCY	3 cut(s)	508, 1084, 1115
BstZ17I	GTATAC	1 cut(s)	1065
BsuRI	GGCC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	8 cut(s)	156, 341, 385, 654, 741, 1168, 1194, 1324
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	2 cut(s)	124, 643
Cac8I	GCNNGC	2 cut(s)	793, 982
CaiI	CAGNNNCTG	2 cut(s)	323, 1387
Cfr13I	GGNCC	3 cut(s)	81, 116, 655
CseI	GACGC	3 cut(s)	119, 309, 1028
Csp6I	GTAC	5 cut(s)	190, 670, 940, 1619, 1687
CspCI	CAANNNNNGTGG	2 cut(s)	1481, 1516
CviAII	CATG	7 cut(s)	174, 376, 981, 1100, 1338, 1531, 1543
CviQI	GTAC	5 cut(s)	190, 670, 940, 1619, 1687
DdeI	CTNAG	5 cut(s)	413, 426, 801, 1380, 1497
Eam1104I	CTCTTC	1 cut(s)	902
EarI	CTCTTC	1 cut(s)	902
Eco105I	TACGTA	1 cut(s)	710
Eco130I	CCWWGG	2 cut(s)	375, 922
Eco24I	GRGCYC	1 cut(s)	922
Eco31I	GGTCTC	1 cut(s)	1433
Eco47I	GGWCC	2 cut(s)	81, 655
EcoO109I	RGGNCCY	1 cut(s)	655
EcoRII	CCWGG	3 cut(s)	127, 192, 1015
EcoT14I	CCWWGG	2 cut(s)	375, 922
EcoT38I	GRGCYC	1 cut(s)	922
ErhI	CCWWGG	2 cut(s)	375, 922
FaeI	CATG	7 cut(s)	177, 379, 984, 1103, 1341, 1534, 1546
FalI	AAGNNNNNCTT	4 cut(s)	291, 323, 1598, 1630
FatI	CATG	7 cut(s)	173, 375, 980, 1099, 1337, 1530, 1542
FauNDI	CATATG	3 cut(s)	458, 727, 1136
FblI	GTMKAC	1 cut(s)	1064
Fnu4HI	GCNGC	8 cut(s)	684, 723, 815, 1097, 1385, 1388, 1643, 1668
FokI	GGATG	8 cut(s)	143, 328, 392, 661, 748, 1155, 1201, 1311
FriOI	GRGCYC	1 cut(s)	922
Fsp4HI	GCNGC	8 cut(s)	684, 723, 815, 1097, 1385, 1388, 1643, 1668
GluI	GCNGC	8 cut(s)	684, 723, 815, 1097, 1385, 1388, 1643, 1668
GsaI	CCCAGC	2 cut(s)	117, 1665
GsuI	CTGGAG	1 cut(s)	1457
HaeIII	GGCC	1 cut(s)	118
HgaI	GACGC	3 cut(s)	119, 309, 1028
Hin1I	GRCGYC	1 cut(s)	1039
Hin1II	CATG	7 cut(s)	177, 379, 984, 1103, 1341, 1534, 1546
HincII	GTYRAC	2 cut(s)	1548, 1593
HindII	GTYRAC	2 cut(s)	1548, 1593
HinfI	GANTC	9 cut(s)	72, 153, 383, 973, 1012, 1205, 1224, 1342, 1405
HpaI	GTTAAC	1 cut(s)	1593
Hpy166II	GTNNAC	5 cut(s)	58, 109, 1065, 1548, 1593
Hpy188I	TCNGA	8 cut(s)	235, 372, 427, 577, 804, 953, 1210, 1713
Hpy188III	TCNNGA	5 cut(s)	99, 312, 1000, 1119, 1436
Hpy8I	GTNNAC	5 cut(s)	58, 109, 1065, 1548, 1593
Hpy99I	CGWCG	1 cut(s)	1256
HpyAV	CCTTC	2 cut(s)	293, 539
HpyCH4III	ACNGT	5 cut(s)	268, 1177, 1354, 1455, 1612
HpyCH4IV	ACGT	1 cut(s)	709
HpyF10VI	GCNNNNNNNGC	4 cut(s)	792, 797, 1105, 1667
HpyF3I	CTNAG	5 cut(s)	413, 426, 801, 1380, 1497
HpySE526I	ACGT	1 cut(s)	709
Hsp92I	GRCGYC	1 cut(s)	1039
Hsp92II	CATG	7 cut(s)	177, 379, 984, 1103, 1341, 1534, 1546
KspAI	GTTAAC	1 cut(s)	1593
LguI	GCTCTTC	1 cut(s)	902
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	7 cut(s)	670, 709, 1083, 1374, 1396, 1629, 1679
LweI	GCATC	3 cut(s)	631, 639, 1333
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	3 cut(s)	121, 169, 461
MboII	GAAGA	4 cut(s)	201, 287, 889, 982
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	3 cut(s)	508, 1084, 1115
MhlI	GDGCHC	1 cut(s)	922
MluCI	AATT	8 cut(s)	27, 251, 438, 820, 1196, 1230, 1537, 1651
MlyI	GAGTC	3 cut(s)	377, 1233, 1399
MmeI	TCCRAC	1 cut(s)	59
MroXI	GAANNNNTTC	2 cut(s)	754, 1246
MseI	TTAA	6 cut(s)	333, 359, 852, 1233, 1592, 1605
MslI	CAYNNNNRTG	2 cut(s)	905, 1148
MspA1I	CMGCKG	1 cut(s)	1387
MspCI	CTTAAG	1 cut(s)	1604
MspR9I	CCNGG	3 cut(s)	129, 194, 1017
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	3 cut(s)	129, 194, 1017
MwoI	GCNNNNNNNGC	4 cut(s)	792, 797, 1105, 1667
NcoI	CCATGG	1 cut(s)	375
NdeI	CATATG	3 cut(s)	458, 727, 1136
NlaIII	CATG	7 cut(s)	177, 379, 984, 1103, 1341, 1534, 1546
NlaIV	GGNNCC	2 cut(s)	83, 919
NmeAIII	GCCGAG	1 cut(s)	1072
NmuCI	GTSAC	2 cut(s)	169, 461
NspI	RCATGY	1 cut(s)	984
PaeI	GCATGC	1 cut(s)	984
PaqCI	CACCTGC	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	902
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PctI	GAATGC	1 cut(s)	587
PdmI	GAANNNNTTC	2 cut(s)	754, 1246
PfeI	GAWTC	6 cut(s)	72, 153, 973, 1012, 1205, 1342
PkrI	GCNGC	8 cut(s)	685, 724, 816, 1098, 1386, 1389, 1644, 1669
PleI	GAGTC	3 cut(s)	377, 1232, 1399
PpsI	GAGTC	3 cut(s)	377, 1232, 1399
Ppu21I	YACGTR	1 cut(s)	710
PpuMI	RGGWCCY	1 cut(s)	655
Psp5II	RGGWCCY	1 cut(s)	655
Psp6I	CCWGG	3 cut(s)	127, 192, 1015
PspFI	CCCAGC	2 cut(s)	113, 1661
PspGI	CCWGG	3 cut(s)	127, 192, 1015
PspN4I	GGNNCC	2 cut(s)	83, 919
PspPI	GGNCC	3 cut(s)	81, 116, 655
PspPPI	RGGWCCY	1 cut(s)	655
PstNI	CAGNNNCTG	2 cut(s)	323, 1387
PsuI	RGATCY	3 cut(s)	508, 1084, 1115
PvuII	CAGCTG	1 cut(s)	1387
RsaI	GTAC	5 cut(s)	191, 671, 941, 1620, 1688
RsaNI	GTAC	5 cut(s)	190, 670, 940, 1619, 1687
RseI	CAYNNNNRTG	2 cut(s)	905, 1148
SapI	GCTCTTC	1 cut(s)	902
SaqAI	TTAA	6 cut(s)	333, 359, 852, 1233, 1592, 1605
SatI	GCNGC	8 cut(s)	684, 723, 815, 1097, 1385, 1388, 1643, 1668
Sau96I	GGNCC	3 cut(s)	81, 116, 655
SchI	GAGTC	3 cut(s)	377, 1233, 1399
ScrFI	CCNGG	3 cut(s)	129, 194, 1017
SduI	GDGCHC	1 cut(s)	922
SfaNI	GCATC	3 cut(s)	631, 639, 1333
SinI	GGWCC	2 cut(s)	81, 655
SmiMI	CAYNNNNRTG	2 cut(s)	905, 1148
SmlI	CTYRAG	1 cut(s)	1604
SmoI	CTYRAG	1 cut(s)	1604
SnaBI	TACGTA	1 cut(s)	710
SphI	GCATGC	1 cut(s)	984
Sse9I	AATT	8 cut(s)	27, 251, 438, 820, 1196, 1230, 1537, 1651
SsiI	CCGC	3 cut(s)	466, 814, 1390
StyD4I	CCNGG	3 cut(s)	127, 192, 1015
StyI	CCWWGG	2 cut(s)	375, 922
TaaI	ACNGT	5 cut(s)	268, 1177, 1354, 1455, 1612
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	3 cut(s)	98, 311, 1587
TaqII	GACCGA	1 cut(s)	1501
TasI	AATT	8 cut(s)	27, 251, 438, 820, 1196, 1230, 1537, 1651
TatI	WGTACW	2 cut(s)	939, 1686
TauI	GCSGC	1 cut(s)	817
TfiI	GAWTC	6 cut(s)	72, 153, 973, 1012, 1205, 1342
Tru1I	TTAA	6 cut(s)	333, 359, 852, 1233, 1592, 1605
Tru9I	TTAA	6 cut(s)	333, 359, 852, 1233, 1592, 1605
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	169, 461
TseI	GCWGC	7 cut(s)	683, 722, 1096, 1384, 1387, 1642, 1667
Tsp45I	GTSAC	2 cut(s)	169, 461
TspGWI	ACGGA	3 cut(s)	644, 1240, 1503
TspRI	CASTG	1 cut(s)	39
Vha464I	CTTAAG	1 cut(s)	1604
VpaK11BI	GGWCC	2 cut(s)	81, 655
XapI	RAATTY	1 cut(s)	820
XceI	RCATGY	1 cut(s)	984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1564
XmiI	GTMKAC	1 cut(s)	1064
XmnI	GAANNNNTTC	2 cut(s)	754, 1246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.