RLG00000031992

CAS1 domain-containing protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
10054010 .. 10059479
5470 bp
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UTR
Exon/CDS
Intron
RLM00000031992

Sequence Viewer

Length: 1623 bp
ATGGTGGACGCTGGGCCTGTTACTCCTGGGCAGGTGTCCTTTTTGCTTGGAATCATCCCAGTTTTTGTCACATGGATATATGCAGAGTACCTGGAATATAAAAAATCTTCATCTGTTCCTAAAGCTCATTCAGATAGCAATCTGGTTGAGTTGGGAGAGGAGACAGTCAAGGAAGATGATCGGGCTGTTTTGCTGGAAGGAGGTCTTTCAAGATCAGCGTCTGTAAAGTTTAATAGTTCATCCATCAAACTGAACTTAATGAGGTTTCTGACCATGGATGACTCTTTTCTACTGGAACACCGACTAACTCTAAGAGTGATGTCTGAGCTTGGTGCAATTCTGTTTTATTTCTACATATGTGACCGCACAAATATACTGGGGTATTCCACAAAGAACTACAATAGGGATCTTTTCATCTTTCTATGCCTTCTCCTCGTCATAGTTTCAGCAATGACATCTTTGAGGAAACACTCTGACAAATCAGCATTCTCTGGGAAATCCATATTTTACCTAAATCGGCATCAAACGGAGGAATGGAAAGGGTGGATGCAGGTCCTATTTCTATTGTACCATTACTTTGCTGCAAGCGAGATATACAATGCAATACGTATGTTTATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTTTCCTATTACTACATTAGAAAGGATTTTAGCCTCGCTCGCTTTGCTCAGATGATGTGGCGGCTGAATTTTTTTGTGGCGTTTTGCTGTATTGTTCTTAACAATGACTATATGCTGTACTACATCTGCCCAATGCACACGCTCTTCACTCTTATGGTGTATGGAGCCCTTGGTATCTTTAGCAAGTACAATGAAATCAGATCAGTAATGGCTATGAAGATTCTTGCATGCTTTCTTGTGGTTATCTTGATCTGGGAAATTCCCCGGGTTTTTGACCTAGTTTGGCGTCCATTAGCTTTCTTATTGGGGTATACTGATCCTGCAAAACCAGATCTCCCTCGGCTGCATGAATGGCATTTTAGATCTGGACTGGATCGCTACATATGGATCATTGGAATGATATATGCGTATTATCATCCTACTGTTGAAAAATGGATGGAGAAATTGGAGGAATCTGATACCAAAAGGAGAGTCTCAATTAAAGCAGGAATAGTTTCCGTCGCTTTATTTGTTGGTTATCTGTGGTATGAATGTATTTACAAGCTGGACAAGGTTTCATACAACAAGTTGCATCCCTACACATCATGGATTCCCATAACAGTTTATATATGCTTACGAAACTTTACTCAGCAGCTGCGGAACTCCTCTTTGACTCTCTTTGCGTGGCTTGGCAAGATTACTCTGGAGACCTATATTTCACAGTTCCACATCTGGTTGAGATCAAATACCCCTAACGGACAACCTAAGTGGCTTCTCTCGGTCATTCCAAACTATCCCATGCTCAATTTCATGTTGACAACTGCCATCTATGTTTTGGTATCTCATAGGCTTTTTGAGTTAACGAATACGCTTAAGACAGTCTTTGTACCCACAAAAGACAACCAAAGGCTGCTTCATAATTTTCTTGCTGGGGCAGCCATTTTTACTTCTTTGTACTTCATTTCATTCATTATTGTTCAGATACCTCATTGA

Protein Analysis

541

Amino Acids

63.27

Weight (kDa)

9.08

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cas1_AcylT PF07779 103 - 513 1.2e-94 10 TM Acyl Transferase domain found in Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 2 cut(s) 22, 541
AccI GTMKAC 1 cut(s) 962
AciI CCGC 3 cut(s) 364, 712, 1288
AclWI GGATC 4 cut(s) 414, 962, 1032, 1046
AcsI RAATTY 2 cut(s) 718, 909
AcyI GRCGYC 1 cut(s) 937
AfaI GTAC 6 cut(s) 89, 569, 770, 839, 1518, 1586
AflII CTTAAG 1 cut(s) 1502
AgsI TTSAA 2 cut(s) 210, 1079
AjnI CCWGG 2 cut(s) 25, 90
AjuI GAANNNNNNNTTGG 2 cut(s) 1527, 1559
AluBI AGCT 5 cut(s) 125, 328, 947, 1195, 1285
AluI AGCT 5 cut(s) 125, 328, 947, 1195, 1285
Alw26I GTCTC 3 cut(s) 155, 1129, 1331
AlwI GGATC 4 cut(s) 414, 962, 1032, 1046
AlwNI CAGNNNCTG 2 cut(s) 221, 1285
Ama87I CYCGRG 1 cut(s) 915
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 7 cut(s) 581, 620, 994, 1282, 1285, 1540, 1565
ApoI RAATTY 2 cut(s) 718, 909
ArsI GACNNNNNNTTYG 2 cut(s) 1107, 1139
Asp700I GAANNNNTTC 2 cut(s) 652, 1144
AspS9I GGNCC 2 cut(s) 14, 553
AsuC2I CCSGG 2 cut(s) 916, 917
AvaI CYCGRG 1 cut(s) 915
AvaII GGWCC 1 cut(s) 553
BanII GRGCYC 1 cut(s) 820
BbvI GCAGC 7 cut(s) 568, 607, 981, 1272, 1294, 1527, 1577
BccI CCATC 3 cut(s) 251, 1081, 1463
BciT130I CCWGG 2 cut(s) 27, 92
BcnI CCSGG 2 cut(s) 916, 917
BcoDI GTCTC 3 cut(s) 155, 1129, 1331
BfaI CTAG 1 cut(s) 929
BfrI CTTAAG 1 cut(s) 1502
BfuAI ACCTGC 2 cut(s) 22, 541
BglII AGATCT 2 cut(s) 982, 1013
BisI GCNGC 8 cut(s) 582, 621, 713, 995, 1283, 1286, 1541, 1566
BlsI GCNGC 8 cut(s) 583, 622, 714, 996, 1284, 1287, 1542, 1567
Bme1390I CCNGG 4 cut(s) 27, 92, 916, 917
Bme18I GGWCC 1 cut(s) 553
BmeT110I CYCGRG 1 cut(s) 915
BmgT120I GGNCC 2 cut(s) 14, 553
BmiI GGNNCC 1 cut(s) 817
BmrFI CCNGG 4 cut(s) 27, 92, 916, 917
BmrI ACTGGG 2 cut(s) 53, 386
BmsI GCATC 3 cut(s) 529, 537, 1231
BmuI ACTGGG 2 cut(s) 53, 386
BpmI CTGGAG 1 cut(s) 1355
BpuMI CCSGG 2 cut(s) 916, 917
BsaAI YACGTR 1 cut(s) 608
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 937
BsaI GGTCTC 1 cut(s) 1331
BsaJI CCNNGG 6 cut(s) 26, 273, 820, 914, 915, 989
BsaXI ACNNNNNCTCC 2 cut(s) 969, 999
Bse1I ACTGG 5 cut(s) 59, 297, 381, 643, 1026
Bse3DI GCAATG 1 cut(s) 456
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 2 cut(s) 27, 92
BseDI CCNNGG 6 cut(s) 26, 273, 820, 914, 915, 989
BseGI GGATG 8 cut(s) 54, 239, 283, 552, 639, 1066, 1092, 1222
BseJI GATNNNNATC 1 cut(s) 138
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 3 cut(s) 315, 713, 1292
BseNI ACTGG 5 cut(s) 59, 297, 381, 643, 1026
BseRI GAGGAG 3 cut(s) 173, 422, 1285
BseXI GCAGC 7 cut(s) 568, 607, 981, 1272, 1294, 1527, 1577
BseYI CCCAGC 2 cut(s) 11, 1559
BshFI GGCC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 915
BsiSI CCGG 1 cut(s) 916
BsmAI GTCTC 3 cut(s) 155, 1129, 1331
BsmI GAATGC 1 cut(s) 485
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 1331
BsoBI CYCGRG 1 cut(s) 915
Bsp1286I GDGCHC 1 cut(s) 820
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 3 cut(s) 364, 712, 1288
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 3 cut(s) 316, 712, 1291
BspLI GGNNCC 1 cut(s) 817
BspMI ACCTGC 2 cut(s) 22, 541
BspPI GGATC 4 cut(s) 414, 962, 1032, 1046
BspQI GCTCTTC 1 cut(s) 800
BspTI CTTAAG 1 cut(s) 1502
BspTNI GGTCTC 1 cut(s) 1331
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 5 cut(s) 59, 297, 381, 643, 1026
BssECI CCNNGG 6 cut(s) 26, 273, 820, 914, 915, 989
BssNAI GTATAC 1 cut(s) 963
BssNI GRCGYC 1 cut(s) 937
BssT1I CCWWGG 2 cut(s) 273, 820
Bst1107I GTATAC 1 cut(s) 963
Bst2UI CCWGG 2 cut(s) 27, 92
Bst4CI ACNGT 5 cut(s) 166, 1075, 1252, 1353, 1510
Bst6I CTCTTC 1 cut(s) 800
BstACI GRCGYC 1 cut(s) 937
BstAFI CTTAAG 1 cut(s) 1502
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 3 cut(s) 586, 691, 880
BstDEI CTNAG 5 cut(s) 311, 324, 699, 1278, 1395
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 8 cut(s) 54, 239, 283, 552, 639, 1066, 1092, 1222
BstMAI GTCTC 3 cut(s) 155, 1129, 1331
BstMWI GCNNNNNNNGC 4 cut(s) 690, 695, 1003, 1565
BstNI CCWGG 2 cut(s) 27, 92
BstNSI RCATGY 1 cut(s) 882
BstSCI CCNGG 4 cut(s) 25, 90, 914, 915
BstSNI TACGTA 1 cut(s) 608
BstV1I GCAGC 7 cut(s) 568, 607, 981, 1272, 1294, 1527, 1577
BstX2I RGATCY 3 cut(s) 406, 982, 1013
BstYI RGATCY 3 cut(s) 406, 982, 1013
BstZ17I GTATAC 1 cut(s) 963
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 8 cut(s) 54, 239, 283, 552, 639, 1066, 1092, 1222
BveI ACCTGC 2 cut(s) 22, 541
Cac8I GCNNGC 3 cut(s) 586, 691, 880
CaiI CAGNNNCTG 2 cut(s) 221, 1285
Cfr13I GGNCC 2 cut(s) 14, 553
Cfr9I CCCGGG 1 cut(s) 915
CseI GACGC 3 cut(s) 17, 207, 926
Csp6I GTAC 6 cut(s) 88, 568, 769, 838, 1517, 1585
CspCI CAANNNNNGTGG 2 cut(s) 1379, 1414
CviAII CATG 7 cut(s) 72, 274, 879, 998, 1236, 1429, 1441
CviQI GTAC 6 cut(s) 88, 568, 769, 838, 1517, 1585
DdeI CTNAG 5 cut(s) 311, 324, 699, 1278, 1395
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
Eco105I TACGTA 1 cut(s) 608
Eco130I CCWWGG 2 cut(s) 273, 820
Eco24I GRGCYC 1 cut(s) 820
Eco31I GGTCTC 1 cut(s) 1331
Eco47I GGWCC 1 cut(s) 553
Eco88I CYCGRG 1 cut(s) 915
EcoO109I RGGNCCY 1 cut(s) 553
EcoRII CCWGG 2 cut(s) 25, 90
EcoT14I CCWWGG 2 cut(s) 273, 820
EcoT38I GRGCYC 1 cut(s) 820
ErhI CCWWGG 2 cut(s) 273, 820
FaeI CATG 7 cut(s) 75, 277, 882, 1001, 1239, 1432, 1444
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 1496, 1528
FatI CATG 7 cut(s) 71, 273, 878, 997, 1235, 1428, 1440
FauNDI CATATG 3 cut(s) 356, 625, 1034
FblI GTMKAC 1 cut(s) 962
Fnu4HI GCNGC 8 cut(s) 582, 621, 713, 995, 1283, 1286, 1541, 1566
FokI GGATG 8 cut(s) 41, 226, 290, 559, 646, 1053, 1099, 1209
FriOI GRGCYC 1 cut(s) 820
Fsp4HI GCNGC 8 cut(s) 582, 621, 713, 995, 1283, 1286, 1541, 1566
FspBI CTAG 1 cut(s) 929
GluI GCNGC 8 cut(s) 582, 621, 713, 995, 1283, 1286, 1541, 1566
GsaI CCCAGC 2 cut(s) 15, 1563
GsuI CTGGAG 1 cut(s) 1355
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 916
HgaI GACGC 3 cut(s) 17, 207, 926
Hin1I GRCGYC 1 cut(s) 937
Hin1II CATG 7 cut(s) 75, 277, 882, 1001, 1239, 1432, 1444
HincII GTYRAC 2 cut(s) 1446, 1491
HindII GTYRAC 2 cut(s) 1446, 1491
HinfI GANTC 7 cut(s) 51, 281, 871, 1103, 1122, 1240, 1303
HpaI GTTAAC 1 cut(s) 1491
HpaII CCGG 1 cut(s) 916
Hpy166II GTNNAC 4 cut(s) 7, 963, 1446, 1491
Hpy188I TCNGA 8 cut(s) 133, 270, 325, 475, 702, 851, 1108, 1611
Hpy188III TCNNGA 4 cut(s) 210, 898, 1017, 1334
Hpy8I GTNNAC 4 cut(s) 7, 963, 1446, 1491
Hpy99I CGWCG 1 cut(s) 1154
HpyAV CCTTC 2 cut(s) 191, 437
HpyCH4III ACNGT 5 cut(s) 166, 1075, 1252, 1353, 1510
HpyCH4IV ACGT 1 cut(s) 607
HpyF10VI GCNNNNNNNGC 4 cut(s) 690, 695, 1003, 1565
HpyF3I CTNAG 5 cut(s) 311, 324, 699, 1278, 1395
HpySE526I ACGT 1 cut(s) 607
Hsp92I GRCGYC 1 cut(s) 937
Hsp92II CATG 7 cut(s) 75, 277, 882, 1001, 1239, 1432, 1444
KspAI GTTAAC 1 cut(s) 1491
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 1 cut(s) 815
Lsp1109I GCAGC 7 cut(s) 568, 607, 981, 1272, 1294, 1527, 1577
LweI GCATC 3 cut(s) 529, 537, 1231
MaeI CTAG 1 cut(s) 929
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 3 cut(s) 19, 67, 359
MboII GAAGA 4 cut(s) 99, 185, 787, 880
MflI RGATCY 3 cut(s) 406, 982, 1013
MhlI GDGCHC 1 cut(s) 820
MluCI AATT 7 cut(s) 336, 718, 909, 1094, 1128, 1435, 1549
MlyI GAGTC 3 cut(s) 275, 1131, 1297
MroXI GAANNNNTTC 2 cut(s) 652, 1144
MseI TTAA 6 cut(s) 231, 257, 750, 1131, 1490, 1503
MslI CAYNNNNRTG 2 cut(s) 803, 1046
MspA1I CMGCKG 1 cut(s) 1285
MspCI CTTAAG 1 cut(s) 1502
MspI CCGG 1 cut(s) 916
MspR9I CCNGG 4 cut(s) 27, 92, 916, 917
Mva1269I GAATGC 1 cut(s) 485
MvaI CCWGG 2 cut(s) 27, 92
MwoI GCNNNNNNNGC 4 cut(s) 690, 695, 1003, 1565
NciI CCSGG 2 cut(s) 916, 917
NcoI CCATGG 1 cut(s) 273
NdeI CATATG 3 cut(s) 356, 625, 1034
NlaIII CATG 7 cut(s) 75, 277, 882, 1001, 1239, 1432, 1444
NlaIV GGNNCC 1 cut(s) 817
NmeAIII GCCGAG 1 cut(s) 970
NmuCI GTSAC 2 cut(s) 67, 359
NspI RCATGY 1 cut(s) 882
PaeI GCATGC 1 cut(s) 882
PaqCI CACCTGC 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 800
PctI GAATGC 1 cut(s) 485
PdmI GAANNNNTTC 2 cut(s) 652, 1144
PfeI GAWTC 4 cut(s) 51, 871, 1103, 1240
PkrI GCNGC 8 cut(s) 583, 622, 714, 996, 1284, 1287, 1542, 1567
PleI GAGTC 3 cut(s) 275, 1130, 1297
PpsI GAGTC 3 cut(s) 275, 1130, 1297
Ppu21I YACGTR 1 cut(s) 608
PpuMI RGGWCCY 1 cut(s) 553
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 25, 90
PspFI CCCAGC 2 cut(s) 11, 1559
PspGI CCWGG 2 cut(s) 25, 90
PspN4I GGNNCC 1 cut(s) 817
PspPI GGNCC 2 cut(s) 14, 553
PspPPI RGGWCCY 1 cut(s) 553
PstNI CAGNNNCTG 2 cut(s) 221, 1285
PsuI RGATCY 3 cut(s) 406, 982, 1013
PvuII CAGCTG 1 cut(s) 1285
RsaI GTAC 6 cut(s) 89, 569, 770, 839, 1518, 1586
RsaNI GTAC 6 cut(s) 88, 568, 769, 838, 1517, 1585
RseI CAYNNNNRTG 2 cut(s) 803, 1046
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 6 cut(s) 231, 257, 750, 1131, 1490, 1503
SatI GCNGC 8 cut(s) 582, 621, 713, 995, 1283, 1286, 1541, 1566
Sau96I GGNCC 2 cut(s) 14, 553
SchI GAGTC 3 cut(s) 275, 1131, 1297
ScrFI CCNGG 4 cut(s) 27, 92, 916, 917
SduI GDGCHC 1 cut(s) 820
SfaNI GCATC 3 cut(s) 529, 537, 1231
SinI GGWCC 1 cut(s) 553
SmaI CCCGGG 1 cut(s) 917
SmiMI CAYNNNNRTG 2 cut(s) 803, 1046
SmlI CTYRAG 1 cut(s) 1502
SmoI CTYRAG 1 cut(s) 1502
SnaBI TACGTA 1 cut(s) 608
SphI GCATGC 1 cut(s) 882
Sse9I AATT 7 cut(s) 336, 718, 909, 1094, 1128, 1435, 1549
SsiI CCGC 3 cut(s) 364, 712, 1288
SspMI CTAG 1 cut(s) 929
StyD4I CCNGG 4 cut(s) 25, 90, 914, 915
StyI CCWWGG 2 cut(s) 273, 820
TaaI ACNGT 5 cut(s) 166, 1075, 1252, 1353, 1510
TaiI ACGT 1 cut(s) 610
TaqII GACCGA 1 cut(s) 1399
TasI AATT 7 cut(s) 336, 718, 909, 1094, 1128, 1435, 1549
TatI WGTACW 3 cut(s) 768, 837, 1584
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 4 cut(s) 51, 871, 1103, 1240
Tru1I TTAA 6 cut(s) 231, 257, 750, 1131, 1490, 1503
Tru9I TTAA 6 cut(s) 231, 257, 750, 1131, 1490, 1503
TseFI GTSAC 2 cut(s) 67, 359
TseI GCWGC 7 cut(s) 581, 620, 994, 1282, 1285, 1540, 1565
Tsp45I GTSAC 2 cut(s) 67, 359
TspGWI ACGGA 3 cut(s) 542, 1138, 1401
TspMI CCCGGG 1 cut(s) 915
Vha464I CTTAAG 1 cut(s) 1502
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 2 cut(s) 718, 909
XceI RCATGY 1 cut(s) 882
XcmI CCANNNNNNNNNTGG 1 cut(s) 1462
XmaI CCCGGG 1 cut(s) 915
XmiI GTMKAC 1 cut(s) 962
XmnI GAANNNNTTC 2 cut(s) 652, 1144
XspI CTAG 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.