AT5G46340

10 TM Acyl Transferase domain found in Cas1p

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
18795737 .. 18800122
4386 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46340.1

Sequence Viewer

Length: 1623 bp
ATGGTGGATCCTGGACCAATTACTCCGGGCCAGGTATCTTTTCTTCTTGGAGTAATCCCAATATTTGTTGGTTGGATATACTCGGAGTTACTTGAGTACAGAAAATCTTGGGTTCCCTTGAAACCTCACTCGGATAATAATCTAGTTGAATTGGGAGACGTAGCAGAGAAGGACGACGACAAAGCTGATCTGTTGGAGGGAGGTCTTGCCCGATCACCATCTGTAAAGTTTCATAATTCATCTATCAGAACAAACATAATCAGGTTTTTGAGTATGGAAGATTCATTTTTGCTGGAACATCGAGCAACCTTGAGAGCAATGTCGGAATTTGGGGCAATCTTAATATATTTCTATATCTGTGACCGCACAGAATTGCTTGGAGATTCTACCAAGAATTACAACCGCGACCTTTTCCTTTTTCTCTACGTTCTTCTCATCATAGTATCAGCCATGACATCTCTCAGAAAACACAATGACAAGTCACCCATATCTGGGAAGTCCATTCTTTACCTTAATCGCCACCAAACTGAAGAATGGAAAGGATGGATGCAGGTTTTGTTCTTAATGTATCACTACTTTGCTGCGGCCGAGATATACAACGCAATCCGTATCTTTATTGCTGCTTATGTTTGGATGACTGGTTTTGGAAACTTCTCTTACTACTATGTCAGAAAGGATTTCTCTGTTGCACGTTTTGCGCAGATGATGTGGAGGCTGAACTTCTTTGTAGCGTTTTGCTGTATTGTTCTCAACAACGACTATATGTTATACTACATCTGCCCAATGCACACTCTTTTCACCCTAATGGTATATGGAGCTCTGGGTATCTTCAGCAAGTACAATGAGATAGGATCGGTGATGGCTCTGAAGATATTTTCATGCTTCCTCGTTGTCTTTTTGTTGTGGGAAATTCCTGGAGCTTTTGAAATATTTTGGGGTCCCTTAACATTTTTGCTAGGTTACAATGACCCTGCCAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTGTAGAGAGATGGATGGAGAAGTTAGAGGACTGTGAAACGAAGAAAAGACTATCCATAAAGGCCGCTATTGTTACTATTACTGTGCTTGTTGGCTATGTGTGGTATGAATGTATCTACAAGCTGGACAGGACCAGTTACAACATGTATCATCCGTACACATCATGGATCCCCATCACTGTTTACATATGCCTTCGGAATTTCACCCACCAGCTTCGAAGTGTCTCATTGACTCTCTTTGCGTGGCTTGGCAAGATCACTTTAGAGACTTACATTTCCCAGTTTCATATATGGCTAAGATCAAACATGCCTGACGGGCAACCAAAATGGCTTCTCTCTATTATTCCGGGATACCCTATGCTCAATTTCATGCTGACAACTGCTATATACGTCCTTGTATCTCACCGTCTCTTTGAACTAACCAACACACTCAAGACGGTTTTCGTACCCACAAAAGACAACAAGCGACTCTTCTCTAACTTCATAGCTGGGATTGCCATCGCTCTTCCACTCTATTGCTTCTCATTCGTTCTTCTTCAGATTCATCGTTAG

Protein Analysis

540

Amino Acids

63.34

Weight (kDa)

8.62

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cas1_AcylT PF07779 100 - 513 2.5e-92 10 TM Acyl Transferase domain found in Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 699
Acc36I ACCTGC 1 cut(s) 541
AccII CGCG 1 cut(s) 405
AciI CCGC 4 cut(s) 364, 403, 584, 1137
AclWI GGATC 6 cut(s) 2, 15, 859, 1046, 1234, 1247
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 3 cut(s) 326, 909, 1270
AcuI CTGAAG 4 cut(s) 549, 814, 887, 1592
AfaI GTAC 4 cut(s) 98, 839, 1229, 1518
AfiI CCNNNNNNNGG 2 cut(s) 491, 492
AflIII ACRYGT 1 cut(s) 1215
AgsI TTSAA 4 cut(s) 121, 149, 926, 1487
AjnI CCWGG 3 cut(s) 10, 30, 913
AluBI AGCT 6 cut(s) 185, 818, 920, 1195, 1285, 1559
AluI AGCT 6 cut(s) 185, 818, 920, 1195, 1285, 1559
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 4 cut(s) 150, 1300, 1331, 1484
AlwI GGATC 6 cut(s) 2, 15, 859, 1046, 1234, 1247
AoxI GGCC 4 cut(s) 28, 585, 1018, 1134
ApeKI GCWGC 3 cut(s) 581, 620, 994
ApoI RAATTY 3 cut(s) 326, 909, 1270
AspLEI GCGC 1 cut(s) 700
AspS9I GGNCC 4 cut(s) 14, 28, 938, 1203
AsuC2I CCSGG 2 cut(s) 27, 1419
AsuHPI GGTGA 7 cut(s) 207, 474, 790, 868, 1058, 1267, 1466
AsuII TTCGAA 1 cut(s) 1288
AvaII GGWCC 3 cut(s) 14, 938, 1203
BamHI GGATCC 2 cut(s) 7, 1239
BanII GRGCYC 1 cut(s) 820
BarI GAAGNNNNNNTAC 2 cut(s) 27, 59
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 3 cut(s) 568, 607, 981
BccI CCATC 7 cut(s) 226, 537, 853, 1077, 1081, 1253, 1577
BciT130I CCWGG 3 cut(s) 12, 32, 915
BciVI GTATCC 1 cut(s) 1415
BcnI CCSGG 2 cut(s) 27, 1419
BcoDI GTCTC 4 cut(s) 150, 1300, 1331, 1484
BfaI CTAG 2 cut(s) 143, 956
BfmI CTRYAG 1 cut(s) 1074
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 1 cut(s) 1415
BglI GCCNNNNNGGC 1 cut(s) 1387
BisI GCNGC 5 cut(s) 582, 585, 621, 995, 1137
BlsI GCNGC 5 cut(s) 583, 586, 622, 996, 1138
Bme1390I CCNGG 5 cut(s) 12, 27, 32, 915, 1419
Bme18I GGWCC 3 cut(s) 14, 938, 1203
BmgT120I GGNCC 4 cut(s) 14, 28, 938, 1203
BmiI GGNNCC 5 cut(s) 9, 114, 939, 940, 1241
BmrFI CCNGG 5 cut(s) 12, 27, 32, 915, 1419
BmrI ACTGGG 1 cut(s) 1345
BmsI GCATC 1 cut(s) 537
BmuI ACTGGG 1 cut(s) 1345
BpmI CTGGAG 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 1288
BpuEI CTTGAG 3 cut(s) 113, 331, 1487
BpuMI CCSGG 2 cut(s) 27, 1419
BsaBI GATNNNNATC 5 cut(s) 138, 217, 987, 1244, 1568
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 492
Bse1I ACTGG 3 cut(s) 643, 1206, 1351
Bse3DI GCAATG 1 cut(s) 324
Bse8I GATNNNNATC 5 cut(s) 138, 217, 987, 1244, 1568
BseBI CCWGG 3 cut(s) 12, 32, 915
BseGI GGATG 5 cut(s) 548, 552, 639, 1092, 1222
BseJI GATNNNNATC 5 cut(s) 138, 217, 987, 1244, 1568
BseLI CCNNNNNNNGG 2 cut(s) 491, 492
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 475
BseNI ACTGG 3 cut(s) 643, 1206, 1351
BseX3I CGGCCG 1 cut(s) 585
BseXI GCAGC 3 cut(s) 568, 607, 981
BseYI CCCAGC 1 cut(s) 1559
Bsh1236I CGCG 1 cut(s) 405
Bsh1285I CGRYCG 1 cut(s) 588
BshFI GGCC 4 cut(s) 30, 587, 1020, 1136
BsiEI CGRYCG 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 820
BsiSI CCGG 2 cut(s) 26, 1418
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 2 cut(s) 491, 492
BsmAI GTCTC 4 cut(s) 150, 1300, 1331, 1484
BsmBI CGTCTC 2 cut(s) 150, 1484
BsmFI GGGAC 1 cut(s) 924
BsnI GGCC 4 cut(s) 30, 587, 1020, 1136
Bsp119I TTCGAA 1 cut(s) 1288
Bsp1286I GDGCHC 1 cut(s) 820
BspACI CCGC 4 cut(s) 364, 403, 584, 1137
BspANI GGCC 4 cut(s) 30, 587, 1020, 1136
BspCNI CTCAG 1 cut(s) 474
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 5 cut(s) 9, 114, 939, 940, 1241
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 6 cut(s) 2, 15, 859, 1046, 1234, 1247
BspQI GCTCTTC 1 cut(s) 1581
BspT104I TTCGAA 1 cut(s) 1288
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 3 cut(s) 643, 1206, 1351
Bst2UI CCWGG 3 cut(s) 12, 32, 915
Bst4CI ACNGT 6 cut(s) 1075, 1106, 1156, 1252, 1478, 1510
Bst6I CTCTTC 2 cut(s) 1547, 1581
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBI TTCGAA 1 cut(s) 1288
BstDEI CTNAG 2 cut(s) 461, 1367
BstF5I GGATG 5 cut(s) 548, 552, 639, 1092, 1222
BstFNI CGCG 1 cut(s) 405
BstHHI GCGC 1 cut(s) 700
BstMAI GTCTC 4 cut(s) 150, 1300, 1331, 1484
BstMCI CGRYCG 1 cut(s) 588
BstMWI GCNNNNNNNGC 5 cut(s) 695, 1003, 1026, 1387, 1565
BstNI CCWGG 3 cut(s) 12, 32, 915
BstNSI RCATGY 2 cut(s) 1219, 1381
BstSCI CCNGG 5 cut(s) 10, 25, 30, 913, 1417
BstSFI CTRYAG 1 cut(s) 1074
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 568, 607, 981
BstX2I RGATCY 2 cut(s) 7, 1239
BstYI RGATCY 2 cut(s) 7, 1239
BstZI CGGCCG 1 cut(s) 585
BsuI GTATCC 1 cut(s) 1415
BsuRI GGCC 4 cut(s) 30, 587, 1020, 1136
BtgZI GCGATG 1 cut(s) 1555
BtsCI GGATG 5 cut(s) 548, 552, 639, 1092, 1222
BtsIMutI CAGTG 1 cut(s) 1248
BveI ACCTGC 1 cut(s) 541
CfoI GCGC 1 cut(s) 700
Cfr13I GGNCC 4 cut(s) 14, 28, 938, 1203
Csp6I GTAC 4 cut(s) 97, 838, 1228, 1517
CviAII CATG 7 cut(s) 451, 879, 998, 1216, 1236, 1378, 1441
CviQI GTAC 4 cut(s) 97, 838, 1228, 1517
DdeI CTNAG 2 cut(s) 461, 1367
EaeI YGGCCR 1 cut(s) 585
EagI CGGCCG 1 cut(s) 585
Eam1104I CTCTTC 2 cut(s) 1547, 1581
EarI CTCTTC 2 cut(s) 1547, 1581
Ecl136II GAGCTC 1 cut(s) 818
EclXI CGGCCG 1 cut(s) 585
Eco147I AGGCCT 1 cut(s) 1020
Eco24I GRGCYC 1 cut(s) 820
Eco47I GGWCC 3 cut(s) 14, 938, 1203
Eco52I CGGCCG 1 cut(s) 585
Eco53kI GAGCTC 1 cut(s) 818
Eco57I CTGAAG 4 cut(s) 549, 814, 887, 1592
EcoICRI GAGCTC 1 cut(s) 818
EcoO109I RGGNCCY 1 cut(s) 938
EcoRII CCWGG 3 cut(s) 10, 30, 913
EcoT38I GRGCYC 1 cut(s) 820
Esp3I CGTCTC 2 cut(s) 150, 1484
FaeI CATG 7 cut(s) 454, 882, 1001, 1219, 1239, 1381, 1444
FalI AAGNNNNNCTT 2 cut(s) 1526, 1558
FaqI GGGAC 1 cut(s) 924
FatI CATG 7 cut(s) 450, 878, 997, 1215, 1235, 1377, 1440
FauNDI CATATG 2 cut(s) 1034, 1259
Fnu4HI GCNGC 5 cut(s) 582, 585, 621, 995, 1137
FokI GGATG 5 cut(s) 555, 559, 646, 1099, 1209
FriOI GRGCYC 1 cut(s) 820
Fsp4HI GCNGC 5 cut(s) 582, 585, 621, 995, 1137
FspBI CTAG 2 cut(s) 143, 956
FspI TGCGCA 1 cut(s) 699
GlaI GCGC 1 cut(s) 699
GluI GCNGC 5 cut(s) 582, 585, 621, 995, 1137
GsaI CCCAGC 1 cut(s) 1563
GsuI CTGGAG 1 cut(s) 936
HaeIII GGCC 4 cut(s) 30, 587, 1020, 1136
HapII CCGG 2 cut(s) 26, 1418
HhaI GCGC 1 cut(s) 700
Hin1II CATG 7 cut(s) 454, 882, 1001, 1219, 1239, 1381, 1444
Hin6I GCGC 1 cut(s) 698
HinP1I GCGC 1 cut(s) 698
HinfI GANTC 5 cut(s) 281, 383, 1303, 1539, 1612
HpaII CCGG 2 cut(s) 26, 1418
HphI GGTGA 7 cut(s) 207, 474, 790, 868, 1058, 1267, 1466
Hpy166II GTNNAC 2 cut(s) 1230, 1255
Hpy188III TCNNGA 1 cut(s) 1504
Hpy8I GTNNAC 2 cut(s) 1230, 1255
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 163, 1274
HpyCH4III ACNGT 6 cut(s) 1075, 1106, 1156, 1252, 1478, 1510
HpyCH4IV ACGT 4 cut(s) 159, 426, 691, 1461
HpyCH4V TGCA 4 cut(s) 550, 689, 787, 997
HpyF10VI GCNNNNNNNGC 5 cut(s) 695, 1003, 1026, 1387, 1565
HpyF3I CTNAG 2 cut(s) 461, 1367
HpySE526I ACGT 4 cut(s) 159, 426, 691, 1461
Hsp92II CATG 7 cut(s) 454, 882, 1001, 1219, 1239, 1381, 1444
HspAI GCGC 1 cut(s) 698
KflI GGGWCCC 1 cut(s) 938
LguI GCTCTTC 1 cut(s) 1581
LmnI GCTCC 2 cut(s) 815, 917
Lsp1109I GCAGC 3 cut(s) 568, 607, 981
LweI GCATC 1 cut(s) 537
MaeI CTAG 2 cut(s) 143, 956
MaeII ACGT 4 cut(s) 159, 426, 691, 1461
MaeIII GTNAC 6 cut(s) 87, 359, 480, 959, 1144, 1208
MflI RGATCY 2 cut(s) 7, 1239
MhlI GDGCHC 1 cut(s) 820
MluCI AATT 9 cut(s) 18, 149, 235, 326, 371, 394, 909, 1270, 1435
MlyI GAGTC 2 cut(s) 1297, 1533
MmeI TCCRAC 3 cut(s) 53, 174, 303
MnlI CCTC 6 cut(s) 135, 190, 194, 705, 896, 1093
MseI TTAA 4 cut(s) 341, 513, 563, 944
MslI CAYNNNNRTG 2 cut(s) 803, 1046
MspI CCGG 2 cut(s) 26, 1418
MspR9I CCNGG 5 cut(s) 12, 27, 32, 915, 1419
MvaI CCWGG 3 cut(s) 12, 32, 915
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 5 cut(s) 695, 1003, 1026, 1387, 1565
NciI CCSGG 2 cut(s) 27, 1419
NdeI CATATG 2 cut(s) 1034, 1259
NlaIII CATG 7 cut(s) 454, 882, 1001, 1219, 1239, 1381, 1444
NlaIV GGNNCC 5 cut(s) 9, 114, 939, 940, 1241
NmeAIII GCCGAG 1 cut(s) 613
NmuCI GTSAC 2 cut(s) 359, 480
NsbI TGCGCA 1 cut(s) 699
NspI RCATGY 2 cut(s) 1219, 1381
NspV TTCGAA 1 cut(s) 1288
PceI AGGCCT 1 cut(s) 1020
PciI ACATGT 1 cut(s) 1215
PciSI GCTCTTC 1 cut(s) 1581
PfeI GAWTC 3 cut(s) 281, 383, 1612
PfoI TCCNGGA 3 cut(s) 10, 913, 1417
PkrI GCNGC 5 cut(s) 583, 586, 622, 996, 1138
PleI GAGTC 2 cut(s) 1297, 1533
PpsI GAGTC 2 cut(s) 1297, 1533
PpuMI RGGWCCY 1 cut(s) 938
PscI ACATGT 1 cut(s) 1215
Psp124BI GAGCTC 1 cut(s) 820
Psp5II RGGWCCY 1 cut(s) 938
Psp6I CCWGG 3 cut(s) 10, 30, 913
PspFI CCCAGC 1 cut(s) 1559
PspGI CCWGG 3 cut(s) 10, 30, 913
PspN4I GGNNCC 5 cut(s) 9, 114, 939, 940, 1241
PspPI GGNCC 4 cut(s) 14, 28, 938, 1203
PspPPI RGGWCCY 1 cut(s) 938
PsuI RGATCY 2 cut(s) 7, 1239
RsaI GTAC 4 cut(s) 98, 839, 1229, 1518
RsaNI GTAC 4 cut(s) 97, 838, 1228, 1517
RseI CAYNNNNRTG 2 cut(s) 803, 1046
SacI GAGCTC 1 cut(s) 820
SapI GCTCTTC 1 cut(s) 1581
SaqAI TTAA 4 cut(s) 341, 513, 563, 944
SatI GCNGC 5 cut(s) 582, 585, 621, 995, 1137
Sau96I GGNCC 4 cut(s) 14, 28, 938, 1203
SchI GAGTC 2 cut(s) 1297, 1533
ScrFI CCNGG 5 cut(s) 12, 27, 32, 915, 1419
SduI GDGCHC 1 cut(s) 820
SfaNI GCATC 1 cut(s) 537
SfcI CTRYAG 1 cut(s) 1074
SfuI TTCGAA 1 cut(s) 1288
SinI GGWCC 3 cut(s) 14, 938, 1203
SmiMI CAYNNNNRTG 2 cut(s) 803, 1046
SmlI CTYRAG 3 cut(s) 92, 310, 1502
SmoI CTYRAG 3 cut(s) 92, 310, 1502
Sse9I AATT 9 cut(s) 18, 149, 235, 326, 371, 394, 909, 1270, 1435
SseBI AGGCCT 1 cut(s) 1020
SsiI CCGC 4 cut(s) 364, 403, 584, 1137
SspI AATATT 2 cut(s) 63, 930
SspMI CTAG 2 cut(s) 143, 956
SstI GAGCTC 1 cut(s) 820
StuI AGGCCT 1 cut(s) 1020
StyD4I CCNGG 5 cut(s) 10, 25, 30, 913, 1417
TaaI ACNGT 6 cut(s) 1075, 1106, 1156, 1252, 1478, 1510
TaiI ACGT 4 cut(s) 162, 429, 694, 1464
TaqI TCGA 2 cut(s) 301, 1288
TasI AATT 9 cut(s) 18, 149, 235, 326, 371, 394, 909, 1270, 1435
TatI WGTACW 2 cut(s) 96, 837
TauI GCSGC 2 cut(s) 587, 1139
TfiI GAWTC 3 cut(s) 281, 383, 1612
Tru1I TTAA 4 cut(s) 341, 513, 563, 944
Tru9I TTAA 4 cut(s) 341, 513, 563, 944
TscAI CASTG 1 cut(s) 1255
TseFI GTSAC 2 cut(s) 359, 480
TseI GCWGC 3 cut(s) 581, 620, 994
Tsp45I GTSAC 2 cut(s) 359, 480
TspGWI ACGGA 2 cut(s) 596, 1215
TspRI CASTG 1 cut(s) 1255
VpaK11BI GGWCC 3 cut(s) 14, 938, 1203
XapI RAATTY 3 cut(s) 326, 909, 1270
XceI RCATGY 2 cut(s) 1219, 1381
XspI CTAG 2 cut(s) 143, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.