Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008251

Physical Location & Seq

Genomic Coordinates Forward (+)

9075729 .. 9082043

Gene Structure 6315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG110200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGTGGACGCTGGGCCTGTTACTCCTGGGCAGGTGTCCTTTTTGCTTGGAATCATCCCGGTTTTTGTCACATGGATATATGCAGAGTACCTGGAGTATAAAAAATCTTCATCTGTTCCTAAAGCTCATTCAGATAGCAATCTGGTTGAGTTGGGAGAAGAGACAGTCAAGGAAGATGATCGGGCTGTTTTGCTGGAAGGAGGTCTTTCGAGATCAGCGTCTGTAAAGTTTAATAGTTCATCCATCAAACTGAACTTAATGAGGTTTCTGACCATGGATGACTCTTTTCTACTGGAACACCGACTAACTCTAAGAGTGATGTCTGAGCTTGGTGCAATTCTGTTTTATTTCTACATATGTGACCGCACAAATGTACTGGGCTATTCCACAAAGAACTACAATAGGGATCTTTTTATCTTTCTATGCCTTCTCCTCGTCATAGTTTCAGCAATGACATCTTTGAGGAAACACTCTGACAAATCGGCATTCTCTGGGAAATCCATATTTTACCTAAATCGGCATCAAACGGAGGAATGGAAAGGGTGGATGCAGGTCCTGTTTCTATTGTACCATTACTTTGCTGCAAGCGAGATATACAATGCAATACGTATGTTTATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTTTCCTATTACTACATTAGAAAGGATTTTAGCCTCGCTCGCTTTGCTCAGATGATGTGGCGGCTGAATTTTTTTGTGGCGTTTTGCTGTATTGTTCTTAACAATGACTATATGCTGTATTACATCTGCCCAATGCACACGCTCTTCACTCTTATGGTGTATGGAGCGCTTGGTATCTTTAGCAAGTACAATGAAATCAGATCAGTAATGGCTATGAAGATTCTTGCATGCTTTCTTGTGGTTATCTTGATTTGGGAAATTCCTGGGGTTTTTGACATAGTTTGGCGTCCATTAGCTTTCTTATTGGGGTATACTGATCCTGCAAAACCAGATCTCCCTCGGCTGCATGAATGGCATTTTAGATCTGGACTGGATCGCTACATATGGATCATTGGAATGATATATGCGTATTATCATCCTACTGTTGAAAAATGGATGGAGAAATTGGAGGAATCTGATACCAAAAGGAGAGTCTCAATTAAAGCAGGAATAGTTTCTGTCGCTTTATTTGTTGGTTATCTGTGGTATGAATGTATTTACAAGCTGGACAAGGTTTCATACAACAAGTTGCATCCCTACACATCATGGATTCCCATAACGTGCGTGTTATACAATTTCTTATCTATTCTTCAATTTAGAAGGGAATGCCTTGCTTGGGATTTAATCAGATGGCTTACTATTACCCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

447

Amino Acids

52.48

Weight (kDa)

8.65

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cas1_AcylT	PF07779	103 - 418	1.2e-61	10 TM Acyl Transferase domain found in Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29890 AT1G29890 AT1G29890 AT2G34410 AT2G34410 AT2G34410 AT5G46340 AT5G46340
fragaria_vesca	FvH4_3g06190
malus_domestica	MD05G1290200.v1.1 MD10G1266300.v1.1
prunus_persica	Prupe.4G075500_v2.0.a1 Prupe.4G075500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013141
rosa_laevigata	RLG00000031992
rosa_multiflora	Rmu_sc0004521.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063440
rosa_rugosa	Rorug05G0007400
rosa_samantha	Rh5AG101700 Rh5BG098100 Rh5CG110200 Rh5DG097300
rosa_wichuraiana	Rw5G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	2 cut(s)	22, 541
AccI	GTMKAC	1 cut(s)	962
AciI	CCGC	2 cut(s)	364, 712
AclWI	GGATC	4 cut(s)	414, 962, 1032, 1046
AcsI	RAATTY	2 cut(s)	718, 909
AcyI	GRCGYC	1 cut(s)	937
AfaI	GTAC	4 cut(s)	89, 375, 569, 839
AfeI	AGCGCT	1 cut(s)	819
AfiI	CCNNNNNNNGG	1 cut(s)	1306
AgsI	TTSAA	2 cut(s)	1079, 1283
AjnI	CCWGG	3 cut(s)	25, 90, 913
AluBI	AGCT	4 cut(s)	125, 328, 947, 1195
AluI	AGCT	4 cut(s)	125, 328, 947, 1195
Alw26I	GTCTC	2 cut(s)	155, 1129
AlwI	GGATC	4 cut(s)	414, 962, 1032, 1046
AlwNI	CAGNNNCTG	2 cut(s)	221, 556
Aor51HI	AGCGCT	1 cut(s)	819
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	3 cut(s)	581, 620, 994
ApoI	RAATTY	2 cut(s)	718, 909
ArsI	GACNNNNNNTTYG	2 cut(s)	1107, 1139
Asp700I	GAANNNNTTC	2 cut(s)	652, 1144
AspLEI	GCGC	1 cut(s)	820
AspS9I	GGNCC	2 cut(s)	14, 553
AsuC2I	CCSGG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	553
BbvI	GCAGC	3 cut(s)	568, 607, 981
BccI	CCATC	3 cut(s)	251, 1081, 1314
BciT130I	CCWGG	3 cut(s)	27, 92, 915
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	155, 1129
BfoI	RGCGCY	1 cut(s)	821
BfuAI	ACCTGC	2 cut(s)	22, 541
BglII	AGATCT	2 cut(s)	982, 1013
BisI	GCNGC	4 cut(s)	582, 621, 713, 995
BlsI	GCNGC	4 cut(s)	583, 622, 714, 996
Bme1390I	CCNGG	4 cut(s)	27, 59, 92, 915
Bme18I	GGWCC	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	14, 553
BmrFI	CCNGG	4 cut(s)	27, 59, 92, 915
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	3 cut(s)	529, 537, 1231
BmuI	ACTGGG	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	608
BsaBI	GATNNNNATC	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	937
BsaJI	CCNNGG	4 cut(s)	26, 273, 914, 989
BsaXI	ACNNNNNCTCC	2 cut(s)	969, 999
Bsc4I	CCNNNNNNNGG	1 cut(s)	1306
Bse1I	ACTGG	4 cut(s)	297, 381, 643, 1026
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	3 cut(s)	27, 92, 915
BseDI	CCNNGG	4 cut(s)	26, 273, 914, 989
BseGI	GGATG	8 cut(s)	54, 239, 283, 552, 639, 1066, 1092, 1222
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	1306
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	315, 713
BseNI	ACTGG	4 cut(s)	297, 381, 643, 1026
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	3 cut(s)	568, 607, 981
BseYI	CCCAGC	1 cut(s)	11
BshFI	GGCC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	1306
BsmAI	GTCTC	2 cut(s)	155, 1129
BsmI	GAATGC	2 cut(s)	485, 1301
BsnI	GGCC	1 cut(s)	16
Bsp143I	GATC	9 cut(s)	178, 212, 406, 851, 967, 982, 1013, 1024, 1038
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	2 cut(s)	364, 712
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	2 cut(s)	316, 712
BspMI	ACCTGC	2 cut(s)	22, 541
BspPI	GGATC	4 cut(s)	414, 962, 1032, 1046
BspQI	GCTCTTC	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	4 cut(s)	297, 381, 643, 1026
BssECI	CCNNGG	4 cut(s)	26, 273, 914, 989
BssMI	GATC	9 cut(s)	178, 212, 406, 851, 967, 982, 1013, 1024, 1038
BssNAI	GTATAC	1 cut(s)	963
BssNI	GRCGYC	1 cut(s)	937
BssT1I	CCWWGG	1 cut(s)	273
Bst1107I	GTATAC	1 cut(s)	963
Bst2UI	CCWGG	3 cut(s)	27, 92, 915
Bst4CI	ACNGT	2 cut(s)	166, 1075
Bst6I	CTCTTC	2 cut(s)	153, 800
BstACI	GRCGYC	1 cut(s)	937
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	3 cut(s)	586, 691, 880
BstDEI	CTNAG	3 cut(s)	311, 324, 699
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	8 cut(s)	54, 239, 283, 552, 639, 1066, 1092, 1222
BstH2I	RGCGCY	1 cut(s)	821
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	9 cut(s)	181, 215, 409, 854, 970, 985, 1016, 1027, 1041
BstMAI	GTCTC	2 cut(s)	155, 1129
BstMBI	GATC	9 cut(s)	178, 212, 406, 851, 967, 982, 1013, 1024, 1038
BstMWI	GCNNNNNNNGC	3 cut(s)	690, 695, 1003
BstNI	CCWGG	3 cut(s)	27, 92, 915
BstNSI	RCATGY	1 cut(s)	882
BstSCI	CCNGG	4 cut(s)	25, 57, 90, 913
BstSNI	TACGTA	1 cut(s)	608
BstV1I	GCAGC	3 cut(s)	568, 607, 981
BstX2I	RGATCY	3 cut(s)	406, 982, 1013
BstYI	RGATCY	3 cut(s)	406, 982, 1013
BstZ17I	GTATAC	1 cut(s)	963
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	8 cut(s)	54, 239, 283, 552, 639, 1066, 1092, 1222
BveI	ACCTGC	2 cut(s)	22, 541
Cac8I	GCNNGC	3 cut(s)	586, 691, 880
CaiI	CAGNNNCTG	2 cut(s)	221, 556
CfoI	GCGC	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	14, 553
CseI	GACGC	3 cut(s)	17, 207, 926
Csp6I	GTAC	4 cut(s)	88, 374, 568, 838
CviAII	CATG	5 cut(s)	72, 274, 879, 998, 1236
CviQI	GTAC	4 cut(s)	88, 374, 568, 838
DdeI	CTNAG	3 cut(s)	311, 324, 699
DpnI	GATC	9 cut(s)	180, 214, 408, 853, 969, 984, 1015, 1026, 1040
DpnII	GATC	9 cut(s)	178, 212, 406, 851, 967, 982, 1013, 1024, 1038
Eam1104I	CTCTTC	2 cut(s)	153, 800
EarI	CTCTTC	2 cut(s)	153, 800
Eco105I	TACGTA	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	553
Eco47III	AGCGCT	1 cut(s)	819
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	3 cut(s)	25, 90, 913
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	5 cut(s)	75, 277, 882, 1001, 1239
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	5 cut(s)	71, 273, 878, 997, 1235
FauNDI	CATATG	3 cut(s)	356, 625, 1034
FblI	GTMKAC	1 cut(s)	962
Fnu4HI	GCNGC	4 cut(s)	582, 621, 713, 995
FokI	GGATG	8 cut(s)	41, 226, 290, 559, 646, 1053, 1099, 1209
Fsp4HI	GCNGC	4 cut(s)	582, 621, 713, 995
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	4 cut(s)	582, 621, 713, 995
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	821
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	3 cut(s)	17, 207, 926
HhaI	GCGC	1 cut(s)	820
Hin1I	GRCGYC	1 cut(s)	937
Hin1II	CATG	5 cut(s)	75, 277, 882, 1001, 1239
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HinfI	GANTC	6 cut(s)	51, 281, 871, 1103, 1122, 1240
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	7, 963
Hpy188I	TCNGA	8 cut(s)	133, 270, 325, 475, 702, 851, 1108, 1319
Hpy188III	TCNNGA	3 cut(s)	210, 898, 1017
Hpy8I	GTNNAC	2 cut(s)	7, 963
HpyAV	CCTTC	3 cut(s)	191, 437, 1284
HpyCH4III	ACNGT	2 cut(s)	166, 1075
HpyCH4IV	ACGT	2 cut(s)	607, 1250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	690, 695, 1003
HpyF3I	CTNAG	3 cut(s)	311, 324, 699
HpySE526I	ACGT	2 cut(s)	607, 1250
Hsp92I	GRCGYC	1 cut(s)	937
Hsp92II	CATG	5 cut(s)	75, 277, 882, 1001, 1239
HspAI	GCGC	1 cut(s)	818
Kzo9I	GATC	9 cut(s)	178, 212, 406, 851, 967, 982, 1013, 1024, 1038
LguI	GCTCTTC	1 cut(s)	800
LmnI	GCTCC	1 cut(s)	815
Lsp1109I	GCAGC	3 cut(s)	568, 607, 981
LweI	GCATC	3 cut(s)	529, 537, 1231
MaeII	ACGT	2 cut(s)	607, 1250
MaeIII	GTNAC	3 cut(s)	19, 67, 359
MalI	GATC	9 cut(s)	180, 214, 408, 853, 969, 984, 1015, 1026, 1040
MboI	GATC	9 cut(s)	178, 212, 406, 851, 967, 982, 1013, 1024, 1038
MboII	GAAGA	6 cut(s)	99, 170, 185, 787, 880, 1271
MflI	RGATCY	3 cut(s)	406, 982, 1013
MluCI	AATT	7 cut(s)	336, 718, 909, 1094, 1128, 1264, 1283
MlyI	GAGTC	2 cut(s)	275, 1131
MnlI	CCTC	8 cut(s)	194, 255, 443, 456, 523, 695, 999, 1093
MroXI	GAANNNNTTC	2 cut(s)	652, 1144
MseI	TTAA	6 cut(s)	231, 257, 750, 1131, 1313, 1342
MslI	CAYNNNNRTG	2 cut(s)	803, 1046
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	4 cut(s)	27, 59, 92, 915
Mva1269I	GAATGC	2 cut(s)	485, 1301
MvaI	CCWGG	3 cut(s)	27, 92, 915
MwoI	GCNNNNNNNGC	3 cut(s)	690, 695, 1003
NciI	CCSGG	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	273
NdeI	CATATG	3 cut(s)	356, 625, 1034
NdeII	GATC	9 cut(s)	178, 212, 406, 851, 967, 982, 1013, 1024, 1038
NlaIII	CATG	5 cut(s)	75, 277, 882, 1001, 1239
NmeAIII	GCCGAG	1 cut(s)	970
NmuCI	GTSAC	2 cut(s)	67, 359
NspI	RCATGY	1 cut(s)	882
PaeI	GCATGC	1 cut(s)	882
PaqCI	CACCTGC	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	800
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	2 cut(s)	485, 1301
PdmI	GAANNNNTTC	2 cut(s)	652, 1144
PfeI	GAWTC	4 cut(s)	51, 871, 1103, 1240
PkrI	GCNGC	4 cut(s)	583, 622, 714, 996
PleI	GAGTC	2 cut(s)	275, 1130
PpsI	GAGTC	2 cut(s)	275, 1130
Ppu21I	YACGTR	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	3 cut(s)	25, 90, 913
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	3 cut(s)	25, 90, 913
PspPI	GGNCC	2 cut(s)	14, 553
PspPPI	RGGWCCY	1 cut(s)	553
PstNI	CAGNNNCTG	2 cut(s)	221, 556
PsuI	RGATCY	3 cut(s)	406, 982, 1013
RsaI	GTAC	4 cut(s)	89, 375, 569, 839
RsaNI	GTAC	4 cut(s)	88, 374, 568, 838
RseI	CAYNNNNRTG	2 cut(s)	803, 1046
SapI	GCTCTTC	1 cut(s)	800
SaqAI	TTAA	6 cut(s)	231, 257, 750, 1131, 1313, 1342
SatI	GCNGC	4 cut(s)	582, 621, 713, 995
Sau3AI	GATC	9 cut(s)	178, 212, 406, 851, 967, 982, 1013, 1024, 1038
Sau96I	GGNCC	2 cut(s)	14, 553
SchI	GAGTC	2 cut(s)	275, 1131
ScrFI	CCNGG	4 cut(s)	27, 59, 92, 915
SfaNI	GCATC	3 cut(s)	529, 537, 1231
SinI	GGWCC	1 cut(s)	553
SmiMI	CAYNNNNRTG	2 cut(s)	803, 1046
SnaBI	TACGTA	1 cut(s)	608
SphI	GCATGC	1 cut(s)	882
Sse9I	AATT	7 cut(s)	336, 718, 909, 1094, 1128, 1264, 1283
SsiI	CCGC	2 cut(s)	364, 712
StyD4I	CCNGG	4 cut(s)	25, 57, 90, 913
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	166, 1075
TaiI	ACGT	2 cut(s)	610, 1253
TaqI	TCGA	1 cut(s)	209
TasI	AATT	7 cut(s)	336, 718, 909, 1094, 1128, 1264, 1283
TatI	WGTACW	2 cut(s)	373, 837
TauI	GCSGC	1 cut(s)	715
TfiI	GAWTC	4 cut(s)	51, 871, 1103, 1240
Tru1I	TTAA	6 cut(s)	231, 257, 750, 1131, 1313, 1342
Tru9I	TTAA	6 cut(s)	231, 257, 750, 1131, 1313, 1342
TseFI	GTSAC	2 cut(s)	67, 359
TseI	GCWGC	3 cut(s)	581, 620, 994
Tsp45I	GTSAC	2 cut(s)	67, 359
TspDTI	ATGAA	7 cut(s)	99, 228, 858, 881, 1014, 1194, 1197
TspGWI	ACGGA	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	553
XapI	RAATTY	2 cut(s)	718, 909
XceI	RCATGY	1 cut(s)	882
XmiI	GTMKAC	1 cut(s)	962
XmnI	GAANNNNTTC	2 cut(s)	652, 1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.