Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008251

Physical Location & Seq

Genomic Coordinates Forward (+)

9420425 .. 9425983

Gene Structure 5559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG101700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGGTGGACGCTGGGCCTGTTACTCCTGGGCAGGTGTCTTTTTTGCTTGGAATCATCCCAGTTTTTGTCACATGGATATATGCAGAGTACCTGGAATATAAAAAATCTTCATCTGTTCCTAAAGCTCATTCAGATAGTAATCTGGTTGAATTGGGAGAGGAGACAGTCAAGGAAGATGATCGGGCTGTTTTGCTGGAAGGAGGTCTTTCGAGATCAGCGTCTGTAAAGTTTAATAGTTCATCCATCAAACTGAACTTAATGAGGTTTCTGACCATGGATGACTCTTTTCTACTGGAACACCGACAAACTCTAAGAGTGATGTCTGAGCTTGGTGCAATTCTGTTTTATTTCTACATATGTGACCGCACAAATATACTGGGGTATTCCACAAAGAACTACAATAGGGATCTTTTCATCTTTCTATGCCTTCTCCTCGTCATAGTTTCAGCAATGACATCTTTGAGGAAACACTCTGACAAATCGGCATTCTCTGGGAAATCCATATTTTACCTAAATCGGCATCAAACGGAGGAATGGAAAGGGTGGATGCAGGTCCTATTTCTATTGTACCATTACTTTGCTGCAAGCGAGATATACAATGCAATACGTATGTTTATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTTTCCTATTACTACATTAGAAAGGATTTTAGCCTCGCTCGCTTTGCTCAGATGATGTGGCGGCTGAATTTTTTTGTGGCGTTTTGCTGTATTGTTCTTAACAATGACTATATGCTATATTACATCTGCCCAATGCACACGCTCTTCACTCTTATGGTGTATGGAGCCCTTGGTATCTTTAGCAAGTACAATGAAATCAGATCAGTAATGGCTATGAAGATTCTTGCATGCTTTCTTGTGGTTATCTTGATTTGGGAGATTCCTGGGGTTTTTTACATAGTTTGGCGTCCATTAGCTTTCTTATTGGGGTATACTGATCCTGCAAAACCAGATCTCCCTCGGCTGCATGAATGGCATTTTAGATCTGGACTGGATCGCTACATATGGATCATTGGAATGATATATGCGTATTATCATCCTACTGTTGAAAAATGGATGGAGAAATTGGAGGAATCTGATACCAAAAGGAGAGTCTCAATTAAAGCAGGAATAGTTTCCGTCGCTTTATTTGTTGGTTATCTGTGGTATGAATGTATTTACAAGCTGGACAAGGTTTCATACAACAAGTTGCATCCCTACACATCATGGATTCCCATAACAGTTTATATATGCTTACGAAACTTTACTCAGCAGCTGCGGAACTCCTCTTTGACTCTCTTTGCGTGGCTTGGCAAGATTACTCTGGAGACCTATATTTCACAGTTCCACATCTGGTTGAGATCAAACACCCCCAATGGACAACCTAAGTGGCTTCTCTCGGTCATTCCAAACTATCCCATGCTCAATTTCATGTTGACAACTGCCATCTATGTTTTGGTATCTCATAGGCTTTTCGAGTTAACGAATACGCTTAAGACAGTCTTTGTACCCACAAAAGACAACCAAAGGCTGCTTCATAATTTTCTTGCTGGGGCAGCTATTTTTACTACTCTGTACTTCATTTCATTCATTATTGTTCAGATACCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

540

Amino Acids

63.25

Weight (kDa)

9.08

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cas1_AcylT	PF07779	102 - 513	5.5e-94	10 TM Acyl Transferase domain found in Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29890 AT1G29890 AT1G29890 AT2G34410 AT2G34410 AT2G34410 AT5G46340 AT5G46340
fragaria_vesca	FvH4_3g06190
malus_domestica	MD05G1290200.v1.1 MD10G1266300.v1.1
prunus_persica	Prupe.4G075500_v2.0.a1 Prupe.4G075500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013141
rosa_laevigata	RLG00000031992
rosa_multiflora	Rmu_sc0004521.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063440
rosa_rugosa	Rorug05G0007400
rosa_samantha	Rh5AG101700 Rh5BG098100 Rh5CG110200 Rh5DG097300
rosa_wichuraiana	Rw5G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	2 cut(s)	22, 541
AccI	GTMKAC	1 cut(s)	962
AciI	CCGC	3 cut(s)	364, 712, 1288
AclWI	GGATC	4 cut(s)	414, 962, 1032, 1046
AcsI	RAATTY	1 cut(s)	718
AcyI	GRCGYC	1 cut(s)	937
AfaI	GTAC	5 cut(s)	89, 569, 839, 1518, 1586
AflII	CTTAAG	1 cut(s)	1502
AgsI	TTSAA	2 cut(s)	149, 1079
AjnI	CCWGG	3 cut(s)	25, 90, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	1527, 1559
AluBI	AGCT	6 cut(s)	125, 328, 947, 1195, 1285, 1568
AluI	AGCT	6 cut(s)	125, 328, 947, 1195, 1285, 1568
Alw26I	GTCTC	3 cut(s)	155, 1129, 1331
AlwI	GGATC	4 cut(s)	414, 962, 1032, 1046
AlwNI	CAGNNNCTG	2 cut(s)	221, 1285
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	7 cut(s)	581, 620, 994, 1282, 1285, 1540, 1565
ApoI	RAATTY	1 cut(s)	718
ArsI	GACNNNNNNTTYG	2 cut(s)	1107, 1139
Asp700I	GAANNNNTTC	2 cut(s)	652, 1144
AspS9I	GGNCC	2 cut(s)	14, 553
AvaII	GGWCC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	820
BbvI	GCAGC	7 cut(s)	568, 607, 981, 1272, 1294, 1527, 1577
BccI	CCATC	3 cut(s)	251, 1081, 1463
BciT130I	CCWGG	3 cut(s)	27, 92, 915
BcoDI	GTCTC	3 cut(s)	155, 1129, 1331
BfrI	CTTAAG	1 cut(s)	1502
BfuAI	ACCTGC	2 cut(s)	22, 541
BglII	AGATCT	2 cut(s)	982, 1013
BisI	GCNGC	8 cut(s)	582, 621, 713, 995, 1283, 1286, 1541, 1566
BlsI	GCNGC	8 cut(s)	583, 622, 714, 996, 1284, 1287, 1542, 1567
Bme1390I	CCNGG	3 cut(s)	27, 92, 915
Bme18I	GGWCC	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	14, 553
BmiI	GGNNCC	1 cut(s)	817
BmrFI	CCNGG	3 cut(s)	27, 92, 915
BmrI	ACTGGG	2 cut(s)	53, 386
BmsI	GCATC	3 cut(s)	529, 537, 1231
BmuI	ACTGGG	2 cut(s)	53, 386
BpmI	CTGGAG	1 cut(s)	1355
BsaAI	YACGTR	1 cut(s)	608
BsaBI	GATNNNNATC	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	937
BsaI	GGTCTC	1 cut(s)	1331
BsaJI	CCNNGG	5 cut(s)	26, 273, 820, 914, 989
BsaXI	ACNNNNNCTCC	2 cut(s)	969, 999
Bse1I	ACTGG	5 cut(s)	59, 297, 381, 643, 1026
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	3 cut(s)	27, 92, 915
BseDI	CCNNGG	5 cut(s)	26, 273, 820, 914, 989
BseGI	GGATG	8 cut(s)	54, 239, 283, 552, 639, 1066, 1092, 1222
BseJI	GATNNNNATC	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	315, 713, 1292
BseNI	ACTGG	5 cut(s)	59, 297, 381, 643, 1026
BseRI	GAGGAG	3 cut(s)	173, 422, 1285
BseXI	GCAGC	7 cut(s)	568, 607, 981, 1272, 1294, 1527, 1577
BseYI	CCCAGC	2 cut(s)	11, 1559
BshFI	GGCC	1 cut(s)	16
BsmAI	GTCTC	3 cut(s)	155, 1129, 1331
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	16
Bso31I	GGTCTC	1 cut(s)	1331
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	3 cut(s)	364, 712, 1288
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	3 cut(s)	316, 712, 1291
BspLI	GGNNCC	1 cut(s)	817
BspMI	ACCTGC	2 cut(s)	22, 541
BspPI	GGATC	4 cut(s)	414, 962, 1032, 1046
BspQI	GCTCTTC	1 cut(s)	800
BspTI	CTTAAG	1 cut(s)	1502
BspTNI	GGTCTC	1 cut(s)	1331
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	5 cut(s)	59, 297, 381, 643, 1026
BssECI	CCNNGG	5 cut(s)	26, 273, 820, 914, 989
BssNAI	GTATAC	1 cut(s)	963
BssNI	GRCGYC	1 cut(s)	937
BssT1I	CCWWGG	2 cut(s)	273, 820
Bst1107I	GTATAC	1 cut(s)	963
Bst2UI	CCWGG	3 cut(s)	27, 92, 915
Bst4CI	ACNGT	5 cut(s)	166, 1075, 1252, 1353, 1510
Bst6I	CTCTTC	1 cut(s)	800
BstACI	GRCGYC	1 cut(s)	937
BstAFI	CTTAAG	1 cut(s)	1502
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	3 cut(s)	586, 691, 880
BstDEI	CTNAG	5 cut(s)	311, 324, 699, 1278, 1395
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	8 cut(s)	54, 239, 283, 552, 639, 1066, 1092, 1222
BstMAI	GTCTC	3 cut(s)	155, 1129, 1331
BstMWI	GCNNNNNNNGC	4 cut(s)	690, 695, 1003, 1565
BstNI	CCWGG	3 cut(s)	27, 92, 915
BstNSI	RCATGY	1 cut(s)	882
BstSCI	CCNGG	3 cut(s)	25, 90, 913
BstSNI	TACGTA	1 cut(s)	608
BstV1I	GCAGC	7 cut(s)	568, 607, 981, 1272, 1294, 1527, 1577
BstX2I	RGATCY	3 cut(s)	406, 982, 1013
BstYI	RGATCY	3 cut(s)	406, 982, 1013
BstZ17I	GTATAC	1 cut(s)	963
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	8 cut(s)	54, 239, 283, 552, 639, 1066, 1092, 1222
BveI	ACCTGC	2 cut(s)	22, 541
Cac8I	GCNNGC	3 cut(s)	586, 691, 880
CaiI	CAGNNNCTG	2 cut(s)	221, 1285
Cfr13I	GGNCC	2 cut(s)	14, 553
CseI	GACGC	3 cut(s)	17, 207, 926
Csp6I	GTAC	5 cut(s)	88, 568, 838, 1517, 1585
CspCI	CAANNNNNGTGG	2 cut(s)	1379, 1414
CviAII	CATG	7 cut(s)	72, 274, 879, 998, 1236, 1429, 1441
CviQI	GTAC	5 cut(s)	88, 568, 838, 1517, 1585
DdeI	CTNAG	5 cut(s)	311, 324, 699, 1278, 1395
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
Eco105I	TACGTA	1 cut(s)	608
Eco130I	CCWWGG	2 cut(s)	273, 820
Eco24I	GRGCYC	1 cut(s)	820
Eco31I	GGTCTC	1 cut(s)	1331
Eco47I	GGWCC	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	3 cut(s)	25, 90, 913
EcoT14I	CCWWGG	2 cut(s)	273, 820
EcoT38I	GRGCYC	1 cut(s)	820
ErhI	CCWWGG	2 cut(s)	273, 820
FaeI	CATG	7 cut(s)	75, 277, 882, 1001, 1239, 1432, 1444
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 1496, 1528
FatI	CATG	7 cut(s)	71, 273, 878, 997, 1235, 1428, 1440
FauNDI	CATATG	3 cut(s)	356, 625, 1034
FblI	GTMKAC	1 cut(s)	962
Fnu4HI	GCNGC	8 cut(s)	582, 621, 713, 995, 1283, 1286, 1541, 1566
FokI	GGATG	8 cut(s)	41, 226, 290, 559, 646, 1053, 1099, 1209
FriOI	GRGCYC	1 cut(s)	820
Fsp4HI	GCNGC	8 cut(s)	582, 621, 713, 995, 1283, 1286, 1541, 1566
GluI	GCNGC	8 cut(s)	582, 621, 713, 995, 1283, 1286, 1541, 1566
GsaI	CCCAGC	2 cut(s)	15, 1563
GsuI	CTGGAG	1 cut(s)	1355
HaeIII	GGCC	1 cut(s)	16
HgaI	GACGC	3 cut(s)	17, 207, 926
Hin1I	GRCGYC	1 cut(s)	937
Hin1II	CATG	7 cut(s)	75, 277, 882, 1001, 1239, 1432, 1444
HincII	GTYRAC	2 cut(s)	1446, 1491
HindII	GTYRAC	2 cut(s)	1446, 1491
HinfI	GANTC	8 cut(s)	51, 281, 871, 910, 1103, 1122, 1240, 1303
HpaI	GTTAAC	1 cut(s)	1491
Hpy166II	GTNNAC	4 cut(s)	7, 963, 1446, 1491
Hpy188I	TCNGA	8 cut(s)	133, 270, 325, 475, 702, 851, 1108, 1611
Hpy188III	TCNNGA	4 cut(s)	210, 898, 1017, 1334
Hpy8I	GTNNAC	4 cut(s)	7, 963, 1446, 1491
Hpy99I	CGWCG	1 cut(s)	1154
HpyAV	CCTTC	2 cut(s)	191, 437
HpyCH4III	ACNGT	5 cut(s)	166, 1075, 1252, 1353, 1510
HpyCH4IV	ACGT	1 cut(s)	607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	690, 695, 1003, 1565
HpyF3I	CTNAG	5 cut(s)	311, 324, 699, 1278, 1395
HpySE526I	ACGT	1 cut(s)	607
Hsp92I	GRCGYC	1 cut(s)	937
Hsp92II	CATG	7 cut(s)	75, 277, 882, 1001, 1239, 1432, 1444
KspAI	GTTAAC	1 cut(s)	1491
LguI	GCTCTTC	1 cut(s)	800
LmnI	GCTCC	1 cut(s)	815
Lsp1109I	GCAGC	7 cut(s)	568, 607, 981, 1272, 1294, 1527, 1577
LweI	GCATC	3 cut(s)	529, 537, 1231
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	3 cut(s)	19, 67, 359
MboII	GAAGA	4 cut(s)	99, 185, 787, 880
MflI	RGATCY	3 cut(s)	406, 982, 1013
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	7 cut(s)	149, 336, 718, 1094, 1128, 1435, 1549
MlyI	GAGTC	3 cut(s)	275, 1131, 1297
MroXI	GAANNNNTTC	2 cut(s)	652, 1144
MseI	TTAA	6 cut(s)	231, 257, 750, 1131, 1490, 1503
MslI	CAYNNNNRTG	2 cut(s)	803, 1046
MspA1I	CMGCKG	1 cut(s)	1285
MspCI	CTTAAG	1 cut(s)	1502
MspR9I	CCNGG	3 cut(s)	27, 92, 915
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	3 cut(s)	27, 92, 915
MwoI	GCNNNNNNNGC	4 cut(s)	690, 695, 1003, 1565
NcoI	CCATGG	1 cut(s)	273
NdeI	CATATG	3 cut(s)	356, 625, 1034
NlaIII	CATG	7 cut(s)	75, 277, 882, 1001, 1239, 1432, 1444
NlaIV	GGNNCC	1 cut(s)	817
NmeAIII	GCCGAG	1 cut(s)	970
NmuCI	GTSAC	2 cut(s)	67, 359
NspI	RCATGY	1 cut(s)	882
PaeI	GCATGC	1 cut(s)	882
PaqCI	CACCTGC	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	800
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	1 cut(s)	485
PdmI	GAANNNNTTC	2 cut(s)	652, 1144
PfeI	GAWTC	5 cut(s)	51, 871, 910, 1103, 1240
PkrI	GCNGC	8 cut(s)	583, 622, 714, 996, 1284, 1287, 1542, 1567
PleI	GAGTC	3 cut(s)	275, 1130, 1297
PpsI	GAGTC	3 cut(s)	275, 1130, 1297
Ppu21I	YACGTR	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	3 cut(s)	25, 90, 913
PspFI	CCCAGC	2 cut(s)	11, 1559
PspGI	CCWGG	3 cut(s)	25, 90, 913
PspN4I	GGNNCC	1 cut(s)	817
PspPI	GGNCC	2 cut(s)	14, 553
PspPPI	RGGWCCY	1 cut(s)	553
PstNI	CAGNNNCTG	2 cut(s)	221, 1285
PsuI	RGATCY	3 cut(s)	406, 982, 1013
PvuII	CAGCTG	1 cut(s)	1285
RsaI	GTAC	5 cut(s)	89, 569, 839, 1518, 1586
RsaNI	GTAC	5 cut(s)	88, 568, 838, 1517, 1585
RseI	CAYNNNNRTG	2 cut(s)	803, 1046
SapI	GCTCTTC	1 cut(s)	800
SaqAI	TTAA	6 cut(s)	231, 257, 750, 1131, 1490, 1503
SatI	GCNGC	8 cut(s)	582, 621, 713, 995, 1283, 1286, 1541, 1566
Sau96I	GGNCC	2 cut(s)	14, 553
SchI	GAGTC	3 cut(s)	275, 1131, 1297
ScrFI	CCNGG	3 cut(s)	27, 92, 915
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	3 cut(s)	529, 537, 1231
SinI	GGWCC	1 cut(s)	553
SmiMI	CAYNNNNRTG	2 cut(s)	803, 1046
SmlI	CTYRAG	1 cut(s)	1502
SmoI	CTYRAG	1 cut(s)	1502
SnaBI	TACGTA	1 cut(s)	608
SphI	GCATGC	1 cut(s)	882
Sse9I	AATT	7 cut(s)	149, 336, 718, 1094, 1128, 1435, 1549
SsiI	CCGC	3 cut(s)	364, 712, 1288
StyD4I	CCNGG	3 cut(s)	25, 90, 913
StyI	CCWWGG	2 cut(s)	273, 820
TaaI	ACNGT	5 cut(s)	166, 1075, 1252, 1353, 1510
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	2 cut(s)	209, 1485
TaqII	GACCGA	1 cut(s)	1399
TasI	AATT	7 cut(s)	149, 336, 718, 1094, 1128, 1435, 1549
TatI	WGTACW	2 cut(s)	837, 1584
TauI	GCSGC	1 cut(s)	715
TfiI	GAWTC	5 cut(s)	51, 871, 910, 1103, 1240
Tru1I	TTAA	6 cut(s)	231, 257, 750, 1131, 1490, 1503
Tru9I	TTAA	6 cut(s)	231, 257, 750, 1131, 1490, 1503
TseFI	GTSAC	2 cut(s)	67, 359
TseI	GCWGC	7 cut(s)	581, 620, 994, 1282, 1285, 1540, 1565
Tsp45I	GTSAC	2 cut(s)	67, 359
TspGWI	ACGGA	2 cut(s)	542, 1138
Vha464I	CTTAAG	1 cut(s)	1502
VpaK11BI	GGWCC	1 cut(s)	553
XapI	RAATTY	1 cut(s)	718
XceI	RCATGY	1 cut(s)	882
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1462
XmiI	GTMKAC	1 cut(s)	962
XmnI	GAANNNNTTC	2 cut(s)	652, 1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.