Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008251

Physical Location & Seq

Genomic Coordinates Reverse (-)

42194678 .. 42200785

Gene Structure 6108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1290200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGTGGACGCGGGGCCAGTTACGCCTGGACAGGTGTCGTTTTTGCTTGGAATCATCCCTGTTTTTGTCACATGGATATATTCAGAGTACTTGGAGTATAAAAAATCTTCATCTCATCCTAAAGTTCATTCAGATACAGATACTAATCTGGTTGAGTTGGGGAAGGTTACAATCAAGGAAGATGAACGAGCTGTTTTGCTTGAAGGAGGTCTTTCAAGATCAGCATCTACAAAGTTTGATAGTTTATCCATCAAAATAAACTTGATCAGGTTTCTGACAATGGATGACTCTTTTTTACTTGAAAACCGAGCAACTCTTAGAGTGATGTCTGAGCTTGGTGCAATTCTGTTCTATTTCTACATATGTGACCGCACAAATATACTGGGAGATTCTACAAAGAAATACAATCGGGATATTTTCATCTTCCTGTACCTTATCCTTGTCATAGTTTCAGCAATGACATCTTTGAAGAAACATACTGACAGATCAGCATTTTCTGGAAAATCCATACTTTACCTAAATCGGCATCAGACTGAGGAATGGAAGGGGTGGATGCAGGTCCTGTTTCTAATGTACCATTACTTTGCTGCAAGTGAGATTTACAATGCAATACGTGTCTTTATTGCTGCTTATGTTTGGATGACTGGATTTGGAAACTTTTCCTATTACTACATTAGAAAGGATTTTAGCCTCGCCCGCTTTGCTCAGATGATGTGGCGGCTGAATTTTTTTGTGGCGTTTTGCTGTATTGTTCTTAACAATGACTATATGCTCTATTACATCTGTCCAATGCACACTCTGTATACTCTTATGGTGTATGGAGCCCTTGGCATCTTTAGCAAGTACAATGAGATCAGATCAGTGATGGCTTTGAAGATTCTCGGGTGCTTTCTTGCGGTTATCTTGATTTGGGAAATACCCGGAGTATTTGAAATAGTCTTTCTTCCTTTATCATTCTTATTGGGGTATACTGATCCTGCTAAACCAGATCTCCATCGTCTGCATGAATGGCATTTTAGATCTGGACTTGATCGCTACATATGGATCATTGGAATGATATATGCCTATTATCATCCTAATGTGGAGAAATGGATGGAGAAATTGGAAGAATCTGATACCAGAAGGAGAGTCTCAATCAAAGCTGGAATATTTTCCAGTTCTATATTTGTTGGGTATCTGTGGTATGAATATATTTACAAGCTGGACAAGGTTTCATACAACAAGTTGCACCCCTACACATCCTGGATTCCAATAACTGTATATATATGCTTGCGGAACTTTACTCAGCAGTTGCGGGGTGTCTCTTTGACTCTCTTTGCGTGGCTTGGGAAGATTACTTTGGAGACCTATATTTCACAGTTCCACATCTGGTTGAGAACAAACACACCTAATGGACAACCTAAGTGGCTTCTCTCTGTCATTCCAGAATACCCGTTGCTCAACTTCATGCTGACAACCGCCATCTATGTTTTGGTATCTCATCGGATTTTTGAGTTAACCAATACACTTAAGACAGTGTTTGTACCCACCAAAGACAACCAAAGGCTGCTTCATAATTTTCTTGCAGGGGCAGCCATATTTACTTGTTTGTATTTTGTCTCGTTCATTCTTGCTCAACCGTTCAAGACCCAAAAGTGGGTTATACAGATGTTTCCTGTTGGATGTGCAAATATAGAAGGAACTTCAATAAGGGAATTGGAAGATGTCGGTTGCGAATATAGCCTACAAAGCTTGCGTTTCAACATTTTTTTTTGTTTCGAGAATGGCAAACTCTCCGTTGCCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

596

Amino Acids

69.48

Weight (kDa)

8.81

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cas1_AcylT	PF07779	106 - 515	1.6e-94	10 TM Acyl Transferase domain found in Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29890 AT1G29890 AT1G29890 AT2G34410 AT2G34410 AT2G34410 AT5G46340 AT5G46340
fragaria_vesca	FvH4_3g06190
malus_domestica	MD05G1290200.v1.1 MD10G1266300.v1.1
prunus_persica	Prupe.4G075500_v2.0.a1 Prupe.4G075500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013141
rosa_laevigata	RLG00000031992
rosa_multiflora	Rmu_sc0004521.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063440
rosa_rugosa	Rorug05G0007400
rosa_samantha	Rh5AG101700 Rh5BG098100 Rh5CG110200 Rh5DG097300
rosa_wichuraiana	Rw5G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AccI	GTMKAC	2 cut(s)	803, 968
AccII	CGCG	1 cut(s)	11
AciI	CCGC	8 cut(s)	11, 370, 697, 718, 896, 1273, 1294, 1458
AclWI	GGATC	2 cut(s)	968, 1052
AcsI	RAATTY	1 cut(s)	724
AfaI	GTAC	5 cut(s)	89, 431, 575, 845, 1524
AfiI	CCNNNNNNNGG	2 cut(s)	1635, 1636
AflII	CTTAAG	1 cut(s)	1508
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	9 cut(s)	203, 216, 302, 469, 874, 932, 1624, 1686, 1741
AjnI	CCWGG	2 cut(s)	25, 1241
AjuI	GAANNNNNNNTTGG	4 cut(s)	1322, 1354, 1533, 1565
AluBI	AGCT	5 cut(s)	191, 334, 1142, 1201, 1731
AluI	AGCT	5 cut(s)	191, 334, 1142, 1201, 1731
Alw26I	GTCTC	4 cut(s)	1135, 1306, 1337, 1603
AlwI	GGATC	2 cut(s)	968, 1052
AlwNI	CAGNNNCTG	1 cut(s)	562
Ama87I	CYCGRG	1 cut(s)	881
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	4 cut(s)	587, 626, 1546, 1571
ApoI	RAATTY	1 cut(s)	724
Asp700I	GAANNNNTTC	2 cut(s)	658, 1150
AspS9I	GGNCC	2 cut(s)	14, 559
AsuC2I	CCSGG	1 cut(s)	921
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	826
BbvI	GCAGC	4 cut(s)	574, 613, 1533, 1583
BccI	CCATC	5 cut(s)	257, 859, 1002, 1087, 1469
BceAI	ACGGC	1 cut(s)	1766
BciT130I	CCWGG	2 cut(s)	27, 1243
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	921
BcoDI	GTCTC	4 cut(s)	1135, 1306, 1337, 1603
BfrI	CTTAAG	1 cut(s)	1508
BfuAI	ACCTGC	1 cut(s)	547
BglII	AGATCT	2 cut(s)	988, 1019
BisI	GCNGC	5 cut(s)	588, 627, 719, 1547, 1572
BlsI	GCNGC	5 cut(s)	589, 628, 720, 1548, 1573
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	3 cut(s)	27, 921, 1243
Bme18I	GGWCC	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	2 cut(s)	14, 559
BmiI	GGNNCC	2 cut(s)	15, 823
BmrFI	CCNGG	3 cut(s)	27, 921, 1243
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	4 cut(s)	233, 535, 543, 840
BmuI	ACTGGG	1 cut(s)	392
BoxI	GACNNNNGTC	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	921
BsaAI	YACGTR	1 cut(s)	614
BsaBI	GATNNNNATC	3 cut(s)	144, 223, 993
BsaI	GGTCTC	1 cut(s)	1337
BsaJI	CCNNGG	1 cut(s)	826
BsaXI	ACNNNNNCTCC	2 cut(s)	975, 1005
Bsc4I	CCNNNNNNNGG	2 cut(s)	1635, 1636
Bse1I	ACTGG	4 cut(s)	17, 387, 649, 1155
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	3 cut(s)	144, 223, 993
BseBI	CCWGG	2 cut(s)	27, 1243
BseDI	CCNNGG	1 cut(s)	826
BseGI	GGATG	9 cut(s)	54, 115, 289, 558, 645, 1072, 1098, 1238, 1667
BseJI	GATNNNNATC	3 cut(s)	144, 223, 993
BseLI	CCNNNNNNNGG	2 cut(s)	1635, 1636
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	4 cut(s)	321, 525, 719, 1298
BseNI	ACTGG	4 cut(s)	17, 387, 649, 1155
BseXI	GCAGC	4 cut(s)	574, 613, 1533, 1583
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	1 cut(s)	921
BslI	CCNNNNNNNGG	2 cut(s)	1635, 1636
BsmAI	GTCTC	4 cut(s)	1135, 1306, 1337, 1603
BsnI	GGCC	1 cut(s)	16
Bso31I	GGTCTC	1 cut(s)	1337
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	1 cut(s)	826
BspACI	CCGC	8 cut(s)	11, 370, 697, 718, 896, 1273, 1294, 1458
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	4 cut(s)	322, 526, 718, 1297
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	15, 823
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	2 cut(s)	968, 1052
BspTI	CTTAAG	1 cut(s)	1508
BspTNI	GGTCTC	1 cut(s)	1337
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	4 cut(s)	17, 387, 649, 1155
BssECI	CCNNGG	1 cut(s)	826
BssNAI	GTATAC	2 cut(s)	804, 969
BssT1I	CCWWGG	1 cut(s)	826
Bst1107I	GTATAC	2 cut(s)	804, 969
Bst2UI	CCWGG	2 cut(s)	27, 1243
Bst4CI	ACNGT	4 cut(s)	1258, 1359, 1516, 1620
BstAFI	CTTAAG	1 cut(s)	1508
BstBAI	YACGTR	1 cut(s)	614
BstC8I	GCNNGC	3 cut(s)	697, 1271, 1733
BstDEI	CTNAG	6 cut(s)	317, 330, 534, 705, 1284, 1401
BstF5I	GGATG	9 cut(s)	54, 115, 289, 558, 645, 1072, 1098, 1238, 1667
BstFNI	CGCG	1 cut(s)	11
BstMAI	GTCTC	4 cut(s)	1135, 1306, 1337, 1603
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 696, 701, 837, 1009, 1571, 1719, 1728
BstNI	CCWGG	2 cut(s)	27, 1243
BstPAI	GACNNNNGTC	1 cut(s)	34
BstSCI	CCNGG	3 cut(s)	25, 919, 1241
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	4 cut(s)	574, 613, 1533, 1583
BstX2I	RGATCY	2 cut(s)	988, 1019
BstYI	RGATCY	2 cut(s)	988, 1019
BstZ17I	GTATAC	2 cut(s)	804, 969
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	9 cut(s)	54, 115, 289, 558, 645, 1072, 1098, 1238, 1667
BtsIMutI	CAGTG	2 cut(s)	867, 1521
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	3 cut(s)	697, 1271, 1733
CaiI	CAGNNNCTG	1 cut(s)	562
Cfr13I	GGNCC	2 cut(s)	14, 559
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	5 cut(s)	88, 430, 574, 844, 1523
CspCI	CAANNNNNGTGG	2 cut(s)	1385, 1420
CviAII	CATG	3 cut(s)	72, 1004, 1447
CviQI	GTAC	5 cut(s)	88, 430, 574, 844, 1523
DdeI	CTNAG	6 cut(s)	317, 330, 534, 705, 1284, 1401
Eco130I	CCWWGG	1 cut(s)	826
Eco24I	GRGCYC	1 cut(s)	826
Eco31I	GGTCTC	1 cut(s)	1337
Eco47I	GGWCC	1 cut(s)	559
Eco88I	CYCGRG	1 cut(s)	881
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	2 cut(s)	25, 1241
EcoT14I	CCWWGG	1 cut(s)	826
EcoT38I	GRGCYC	1 cut(s)	826
ErhI	CCWWGG	1 cut(s)	826
FaeI	CATG	3 cut(s)	75, 1007, 1450
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	3 cut(s)	71, 1003, 1446
FauI	CCCGC	3 cut(s)	4, 704, 1287
FauNDI	CATATG	2 cut(s)	362, 1040
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	2 cut(s)	803, 968
Fnu4HI	GCNGC	5 cut(s)	588, 627, 719, 1547, 1572
FokI	GGATG	9 cut(s)	41, 102, 296, 565, 652, 1059, 1105, 1225, 1674
FriOI	GRGCYC	1 cut(s)	826
Fsp4HI	GCNGC	5 cut(s)	588, 627, 719, 1547, 1572
GluI	GCNGC	5 cut(s)	588, 627, 719, 1547, 1572
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	1 cut(s)	921
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	75, 1007, 1450
HincII	GTYRAC	1 cut(s)	1497
HindII	GTYRAC	1 cut(s)	1497
HindIII	AAGCTT	1 cut(s)	1729
HinfI	GANTC	8 cut(s)	51, 287, 389, 877, 1109, 1128, 1246, 1309
HpaI	GTTAAC	1 cut(s)	1497
HpaII	CCGG	1 cut(s)	921
Hpy166II	GTNNAC	4 cut(s)	7, 804, 969, 1497
Hpy188I	TCNGA	9 cut(s)	85, 133, 276, 331, 531, 708, 857, 1114, 1485
Hpy188III	TCNNGA	8 cut(s)	216, 410, 498, 904, 1023, 1424, 1624, 1759
Hpy8I	GTNNAC	4 cut(s)	7, 804, 969, 1497
HpyAV	CCTTC	5 cut(s)	157, 197, 538, 1116, 1670
HpyCH4III	ACNGT	4 cut(s)	1258, 1359, 1516, 1620
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	9 cut(s)	341, 556, 590, 608, 793, 1003, 1228, 1565, 1667
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 696, 701, 837, 1009, 1571, 1719, 1728
HpyF3I	CTNAG	6 cut(s)	317, 330, 534, 705, 1284, 1401
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	3 cut(s)	75, 1007, 1450
Ksp22I	TGATCA	1 cut(s)	264
KspAI	GTTAAC	1 cut(s)	1497
LmnI	GCTCC	1 cut(s)	821
Lsp1109I	GCAGC	4 cut(s)	574, 613, 1533, 1583
LweI	GCATC	4 cut(s)	233, 535, 543, 840
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	4 cut(s)	19, 67, 166, 365
MboII	GAAGA	9 cut(s)	99, 191, 415, 481, 886, 935, 1118, 1342, 1712
MflI	RGATCY	2 cut(s)	988, 1019
MhlI	GDGCHC	1 cut(s)	826
MluCI	AATT	5 cut(s)	342, 724, 1100, 1555, 1694
MlyI	GAGTC	3 cut(s)	281, 1137, 1303
MmeI	TCCRAC	1 cut(s)	1639
MnlI	CCTC	3 cut(s)	200, 529, 701
MroXI	GAANNNNTTC	2 cut(s)	658, 1150
MseI	TTAA	3 cut(s)	756, 1496, 1509
MslI	CAYNNNNRTG	2 cut(s)	1052, 1077
MspCI	CTTAAG	1 cut(s)	1508
MspI	CCGG	1 cut(s)	921
MspR9I	CCNGG	3 cut(s)	27, 921, 1243
MvaI	CCWGG	2 cut(s)	27, 1243
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	8 cut(s)	22, 696, 701, 837, 1009, 1571, 1719, 1728
NciI	CCSGG	1 cut(s)	921
NdeI	CATATG	2 cut(s)	362, 1040
NlaIII	CATG	3 cut(s)	75, 1007, 1450
NlaIV	GGNNCC	2 cut(s)	15, 823
NmuCI	GTSAC	2 cut(s)	67, 365
PdmI	GAANNNNTTC	2 cut(s)	658, 1150
PfeI	GAWTC	5 cut(s)	51, 389, 877, 1109, 1246
PfoI	TCCNGGA	1 cut(s)	1241
PkrI	GCNGC	5 cut(s)	589, 628, 720, 1548, 1573
PleI	GAGTC	3 cut(s)	281, 1136, 1303
PpsI	GAGTC	3 cut(s)	281, 1136, 1303
Ppu21I	YACGTR	1 cut(s)	614
PpuMI	RGGWCCY	1 cut(s)	559
PshAI	GACNNNNGTC	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	559
Psp6I	CCWGG	2 cut(s)	25, 1241
PspGI	CCWGG	2 cut(s)	25, 1241
PspN4I	GGNNCC	2 cut(s)	15, 823
PspPI	GGNCC	2 cut(s)	14, 559
PspPPI	RGGWCCY	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	562
PsuI	RGATCY	2 cut(s)	988, 1019
RsaI	GTAC	5 cut(s)	89, 431, 575, 845, 1524
RsaNI	GTAC	5 cut(s)	88, 430, 574, 844, 1523
RseI	CAYNNNNRTG	2 cut(s)	1052, 1077
SaqAI	TTAA	3 cut(s)	756, 1496, 1509
SatI	GCNGC	5 cut(s)	588, 627, 719, 1547, 1572
Sau96I	GGNCC	2 cut(s)	14, 559
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	3 cut(s)	281, 1137, 1303
ScrFI	CCNGG	3 cut(s)	27, 921, 1243
SduI	GDGCHC	1 cut(s)	826
SfaNI	GCATC	4 cut(s)	233, 535, 543, 840
SinI	GGWCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	2 cut(s)	1052, 1077
SmlI	CTYRAG	1 cut(s)	1508
SmoI	CTYRAG	1 cut(s)	1508
Sse9I	AATT	5 cut(s)	342, 724, 1100, 1555, 1694
SsiI	CCGC	8 cut(s)	11, 370, 697, 718, 896, 1273, 1294, 1458
SspI	AATATT	1 cut(s)	1149
StyD4I	CCNGG	3 cut(s)	25, 919, 1241
StyI	CCWWGG	1 cut(s)	826
TaaI	ACNGT	4 cut(s)	1258, 1359, 1516, 1620
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	1 cut(s)	1758
TasI	AATT	5 cut(s)	342, 724, 1100, 1555, 1694
TatI	WGTACW	2 cut(s)	87, 843
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	5 cut(s)	51, 389, 877, 1109, 1246
Tru1I	TTAA	3 cut(s)	756, 1496, 1509
Tru9I	TTAA	3 cut(s)	756, 1496, 1509
TscAI	CASTG	2 cut(s)	867, 1521
TseFI	GTSAC	2 cut(s)	67, 365
TseI	GCWGC	4 cut(s)	587, 626, 1546, 1571
Tsp45I	GTSAC	2 cut(s)	67, 365
TspGWI	ACGGA	1 cut(s)	1765
TspRI	CASTG	2 cut(s)	867, 1521
Vha464I	CTTAAG	1 cut(s)	1508
VpaK11BI	GGWCC	1 cut(s)	559
XapI	RAATTY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1468
XmiI	GTMKAC	2 cut(s)	803, 968
XmnI	GAANNNNTTC	2 cut(s)	658, 1150
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.