Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008251

Physical Location & Seq

Genomic Coordinates Reverse (-)

35919133 .. 35925187

Gene Structure 6055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1266300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGGTGGACGCTGGGCCAGTTACGCCTGGACAGGTGTCATTTTTGCTTGGAATCATCCCAGTTTTTGTCACATGGATATATTCAGAGTACTTGGAGTATAAAAGATCTTCATCTCATCCTAAAGTTCATTCAGATACTAATCTGGTTGAGTTGGGAGAGGAGACAATCAAGGAAGATGATCGAGCTGTTTTGCTGGAAGGAGGCCTTTCAAGATCAGCATCTACAAAGTTTAACAGTTCATCCATCAAAATAAATTTAATCAGGTTTCTGAATATGGATGACTCTTTTCTACTTGAAAACAGAGCAACTCTTAGAGTCATGTCTGAGCTTGGTGCAATTCTGTTCTATTTCTACATATGTGACCGCACAAATATACTGGGAGATTCTACGAAGAAATACAATCGGGACCTTTTCATCTTCCTGTACCTTATCCTTGTCATAGTTTCAGCAATGACATCTTTGAAAAAACATACTGACAAATCAGCATTTTCTGGAAAATCCATACTTTACCTAAATCGGCATCAGACTGAGGAATGGAAAGGGTGGATGCAGGTCCTATTTCTAATGTACCATTACTTTGCTGCTAGTGAGATTTACAATGCAATACGCATCTTTATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTACTACATTAGAAAGGATTTTAGCCTCGCCCGCTTTGCTCAGATGATGTGGCGGCTGAATTTTTTTGTGGCGTTTTGCTGTATTGTTCTTAACAATGACTATATGCTCTATTACATCTGTCCAATGCACACTCTGTATACTCTTATGGTGTATGGAGCCCTTGGCATCTTTAGCAAGTACAATGAGATCAGATCAGTTATGGCTTTGAAGATTCTCGGATGCTTTCTTGCGGTTATCTTGATTTGGGAAATACCTGGAGTGTTTGAATTAGTCTTTCATCCATTATCATTCTTATTGGGGTATACTGATCCTGCTAAACCAGATCTCCATCGTCTGCATGAATGGCATTTTAGATCTGGACTTGATCGCTACATATGGATCATTGGAATGATGTATGCCTATTATCATCCTAATGTGGAGAAATGGATGGAGAAATTGGAGGAATCTGATACCATAAGGAGAGTCTCAATCAAAGCAGGAATATTTTCCAGTTCTATATTTGTTGGTTATCTGTGGTATGAATATATTTACAAGCTGGACAAGGTTTCATACAACAAATTGCACCCCTACACATCATGGATTCCGATAACTGTATATATATGCTTGCGGAACTTTACTCAGCAGTTGCGGGGTGTCTCTTTGACTCTCTTTGCGTGGCTTGGGAAGATTACTTTGGAGACCTATATTTCACAGTTCCACATCTGGTTGAGAACAAACACACCTAATGGACAGCCTAAGTGGCTTCTCTCTGTCATTCCAGAATATCCGTTGCTCAACTTCATGCTGACAACCGCCATCTATGTTTTGGTATCTCATCGGATTTTCGAGTTAACCAATACGCTTAAGACAGTGTTTGTACCCACCAAAGACAACCAAAGGCTGCTTCATAATTTTCTCGCGGGGGCTGCCATTTTTACTTGTTTGTATTTTGTCTCATTCATTCTTGTTCAGATACCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

541

Amino Acids

63.28

Weight (kDa)

8.85

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cas1_AcylT	PF07779	102 - 513	8.7e-95	10 TM Acyl Transferase domain found in Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29890 AT1G29890 AT1G29890 AT2G34410 AT2G34410 AT2G34410 AT5G46340 AT5G46340
fragaria_vesca	FvH4_3g06190
malus_domestica	MD05G1290200.v1.1 MD10G1266300.v1.1
prunus_persica	Prupe.4G075500_v2.0.a1 Prupe.4G075500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0013141
rosa_laevigata	RLG00000031992
rosa_multiflora	Rmu_sc0004521.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063440
rosa_rugosa	Rorug05G0007400
rosa_samantha	Rh5AG101700 Rh5BG098100 Rh5CG110200 Rh5DG097300
rosa_wichuraiana	Rw5G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	541
AccI	GTMKAC	2 cut(s)	797, 962
AccII	CGCG	1 cut(s)	1559
AciI	CCGC	8 cut(s)	364, 691, 712, 890, 1267, 1288, 1452, 1559
AclWI	GGATC	2 cut(s)	962, 1046
AcsI	RAATTY	2 cut(s)	253, 718
AfaI	GTAC	5 cut(s)	89, 425, 569, 839, 1518
AflII	CTTAAG	1 cut(s)	1502
AgsI	TTSAA	5 cut(s)	210, 296, 463, 868, 926
AjnI	CCWGG	2 cut(s)	25, 913
AjuI	GAANNNNNNNTTGG	4 cut(s)	1316, 1348, 1527, 1559
AluBI	AGCT	3 cut(s)	185, 328, 1195
AluI	AGCT	3 cut(s)	185, 328, 1195
Alw26I	GTCTC	5 cut(s)	155, 1129, 1300, 1331, 1597
AlwI	GGATC	2 cut(s)	962, 1046
AoxI	GGCC	2 cut(s)	14, 202
ApeKI	GCWGC	4 cut(s)	581, 620, 1540, 1565
ApoI	RAATTY	2 cut(s)	253, 718
Asp700I	GAANNNNTTC	1 cut(s)	1144
AspS9I	GGNCC	3 cut(s)	14, 406, 553
AvaII	GGWCC	2 cut(s)	406, 553
BanII	GRGCYC	1 cut(s)	820
BbvI	GCAGC	4 cut(s)	568, 607, 1527, 1552
BccI	CCATC	4 cut(s)	251, 996, 1081, 1463
BciT130I	CCWGG	2 cut(s)	27, 915
BcoDI	GTCTC	5 cut(s)	155, 1129, 1300, 1331, 1597
BfaI	CTAG	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	1502
BfuAI	ACCTGC	1 cut(s)	541
BglI	GCCNNNNNGGC	1 cut(s)	1399
BglII	AGATCT	3 cut(s)	104, 982, 1013
BisI	GCNGC	5 cut(s)	582, 621, 713, 1541, 1566
BlsI	GCNGC	5 cut(s)	583, 622, 714, 1542, 1567
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	27, 915
Bme18I	GGWCC	2 cut(s)	406, 553
BmgT120I	GGNCC	3 cut(s)	14, 406, 553
BmiI	GGNNCC	2 cut(s)	407, 817
BmrFI	CCNGG	2 cut(s)	27, 915
BmrI	ACTGGG	2 cut(s)	53, 386
BmsI	GCATC	6 cut(s)	227, 529, 537, 618, 834, 869
BmuI	ACTGGG	2 cut(s)	53, 386
BoxI	GACNNNNGTC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	936
BsaBI	GATNNNNATC	4 cut(s)	109, 138, 217, 987
BsaI	GGTCTC	1 cut(s)	1331
BsaJI	CCNNGG	1 cut(s)	820
BsaXI	ACNNNNNCTCC	2 cut(s)	969, 999
Bse1I	ACTGG	5 cut(s)	17, 59, 381, 643, 1149
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	4 cut(s)	109, 138, 217, 987
BseBI	CCWGG	2 cut(s)	27, 915
BseDI	CCNNGG	1 cut(s)	820
BseJI	GATNNNNATC	4 cut(s)	109, 138, 217, 987
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	4 cut(s)	315, 519, 713, 1292
BseNI	ACTGG	5 cut(s)	17, 59, 381, 643, 1149
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	4 cut(s)	568, 607, 1527, 1552
BseYI	CCCAGC	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	1559
BshFI	GGCC	2 cut(s)	16, 204
BslFI	GGGAC	1 cut(s)	419
BsmAI	GTCTC	5 cut(s)	155, 1129, 1300, 1331, 1597
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	16, 204
Bso31I	GGTCTC	1 cut(s)	1331
Bsp1286I	GDGCHC	1 cut(s)	820
BspACI	CCGC	8 cut(s)	364, 691, 712, 890, 1267, 1288, 1452, 1559
BspANI	GGCC	2 cut(s)	16, 204
BspCNI	CTCAG	4 cut(s)	316, 520, 712, 1291
BspFNI	CGCG	1 cut(s)	1559
BspLI	GGNNCC	2 cut(s)	407, 817
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	2 cut(s)	962, 1046
BspTI	CTTAAG	1 cut(s)	1502
BspTNI	GGTCTC	1 cut(s)	1331
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	5 cut(s)	17, 59, 381, 643, 1149
BssECI	CCNNGG	1 cut(s)	820
BssNAI	GTATAC	2 cut(s)	798, 963
BssT1I	CCWWGG	1 cut(s)	820
Bst1107I	GTATAC	2 cut(s)	798, 963
Bst2UI	CCWGG	2 cut(s)	27, 915
Bst4CI	ACNGT	4 cut(s)	236, 1252, 1353, 1510
BstAFI	CTTAAG	1 cut(s)	1502
BstC8I	GCNNGC	2 cut(s)	691, 1265
BstDEI	CTNAG	6 cut(s)	311, 324, 528, 699, 1278, 1395
BstFNI	CGCG	1 cut(s)	1559
BstMAI	GTCTC	5 cut(s)	155, 1129, 1300, 1331, 1597
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 690, 695, 831, 1003, 1399, 1565
BstNI	CCWGG	2 cut(s)	27, 915
BstPAI	GACNNNNGTC	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	25, 913
BstUI	CGCG	1 cut(s)	1559
BstV1I	GCAGC	4 cut(s)	568, 607, 1527, 1552
BstX2I	RGATCY	3 cut(s)	104, 982, 1013
BstYI	RGATCY	3 cut(s)	104, 982, 1013
BstZ17I	GTATAC	2 cut(s)	798, 963
BsuRI	GGCC	2 cut(s)	16, 204
BtsIMutI	CAGTG	1 cut(s)	1515
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	2 cut(s)	691, 1265
Cfr13I	GGNCC	3 cut(s)	14, 406, 553
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	5 cut(s)	88, 424, 568, 838, 1517
CviAII	CATG	5 cut(s)	72, 319, 998, 1236, 1441
CviQI	GTAC	5 cut(s)	88, 424, 568, 838, 1517
DdeI	CTNAG	6 cut(s)	311, 324, 528, 699, 1278, 1395
Eco130I	CCWWGG	1 cut(s)	820
Eco147I	AGGCCT	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	820
Eco31I	GGTCTC	1 cut(s)	1331
Eco47I	GGWCC	2 cut(s)	406, 553
EcoO109I	RGGNCCY	2 cut(s)	406, 553
EcoRII	CCWGG	2 cut(s)	25, 913
EcoT14I	CCWWGG	1 cut(s)	820
EcoT38I	GRGCYC	1 cut(s)	820
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	5 cut(s)	75, 322, 1001, 1239, 1444
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	5 cut(s)	71, 318, 997, 1235, 1440
FauI	CCCGC	3 cut(s)	698, 1281, 1552
FauNDI	CATATG	3 cut(s)	356, 625, 1034
FblI	GTMKAC	2 cut(s)	797, 962
Fnu4HI	GCNGC	5 cut(s)	582, 621, 713, 1541, 1566
FriOI	GRGCYC	1 cut(s)	820
Fsp4HI	GCNGC	5 cut(s)	582, 621, 713, 1541, 1566
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	5 cut(s)	582, 621, 713, 1541, 1566
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	936
HaeIII	GGCC	2 cut(s)	16, 204
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	5 cut(s)	75, 322, 1001, 1239, 1444
HincII	GTYRAC	1 cut(s)	1491
HindII	GTYRAC	1 cut(s)	1491
HinfI	GANTC	9 cut(s)	51, 281, 315, 383, 871, 1103, 1122, 1240, 1303
HpaI	GTTAAC	1 cut(s)	1491
Hpy166II	GTNNAC	4 cut(s)	7, 798, 963, 1491
Hpy188III	TCNNGA	6 cut(s)	210, 404, 492, 898, 1017, 1418
Hpy8I	GTNNAC	4 cut(s)	7, 798, 963, 1491
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	4 cut(s)	236, 1252, 1353, 1510
HpyCH4V	TGCA	7 cut(s)	335, 550, 602, 623, 787, 997, 1222
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 690, 695, 831, 1003, 1399, 1565
HpyF3I	CTNAG	6 cut(s)	311, 324, 528, 699, 1278, 1395
Hsp92II	CATG	5 cut(s)	75, 322, 1001, 1239, 1444
KspAI	GTTAAC	1 cut(s)	1491
LmnI	GCTCC	1 cut(s)	815
Lsp1109I	GCAGC	4 cut(s)	568, 607, 1527, 1552
LweI	GCATC	6 cut(s)	227, 529, 537, 618, 834, 869
MaeI	CTAG	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	19, 67, 359
MboII	GAAGA	6 cut(s)	99, 185, 403, 409, 880, 1336
MflI	RGATCY	3 cut(s)	104, 982, 1013
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	7 cut(s)	253, 336, 718, 926, 1094, 1217, 1549
MlyI	GAGTC	4 cut(s)	275, 324, 1131, 1297
MnlI	CCTC	5 cut(s)	151, 194, 523, 695, 1093
MroXI	GAANNNNTTC	1 cut(s)	1144
MseI	TTAA	5 cut(s)	231, 257, 750, 1490, 1503
MslI	CAYNNNNRTG	2 cut(s)	1046, 1071
MspCI	CTTAAG	1 cut(s)	1502
MspR9I	CCNGG	2 cut(s)	27, 915
MvaI	CCWGG	2 cut(s)	27, 915
MvnI	CGCG	1 cut(s)	1559
MwoI	GCNNNNNNNGC	7 cut(s)	22, 690, 695, 831, 1003, 1399, 1565
NdeI	CATATG	3 cut(s)	356, 625, 1034
NlaIII	CATG	5 cut(s)	75, 322, 1001, 1239, 1444
NlaIV	GGNNCC	2 cut(s)	407, 817
NmuCI	GTSAC	2 cut(s)	67, 359
PceI	AGGCCT	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	1144
PfeI	GAWTC	5 cut(s)	51, 383, 871, 1103, 1240
PkrI	GCNGC	5 cut(s)	583, 622, 714, 1542, 1567
PleI	GAGTC	4 cut(s)	275, 323, 1130, 1297
PpsI	GAGTC	4 cut(s)	275, 323, 1130, 1297
PpuMI	RGGWCCY	2 cut(s)	406, 553
PshAI	GACNNNNGTC	1 cut(s)	34
Psp5II	RGGWCCY	2 cut(s)	406, 553
Psp6I	CCWGG	2 cut(s)	25, 913
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	2 cut(s)	25, 913
PspN4I	GGNNCC	2 cut(s)	407, 817
PspPI	GGNCC	3 cut(s)	14, 406, 553
PspPPI	RGGWCCY	2 cut(s)	406, 553
PsuI	RGATCY	3 cut(s)	104, 982, 1013
RsaI	GTAC	5 cut(s)	89, 425, 569, 839, 1518
RsaNI	GTAC	5 cut(s)	88, 424, 568, 838, 1517
RseI	CAYNNNNRTG	2 cut(s)	1046, 1071
SaqAI	TTAA	5 cut(s)	231, 257, 750, 1490, 1503
SatI	GCNGC	5 cut(s)	582, 621, 713, 1541, 1566
Sau96I	GGNCC	3 cut(s)	14, 406, 553
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	4 cut(s)	275, 324, 1131, 1297
ScrFI	CCNGG	2 cut(s)	27, 915
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	6 cut(s)	227, 529, 537, 618, 834, 869
SinI	GGWCC	2 cut(s)	406, 553
SmiMI	CAYNNNNRTG	2 cut(s)	1046, 1071
SmlI	CTYRAG	1 cut(s)	1502
SmoI	CTYRAG	1 cut(s)	1502
Sse9I	AATT	7 cut(s)	253, 336, 718, 926, 1094, 1217, 1549
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	8 cut(s)	364, 691, 712, 890, 1267, 1288, 1452, 1559
SspI	AATATT	1 cut(s)	1143
SspMI	CTAG	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	25, 913
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	4 cut(s)	236, 1252, 1353, 1510
TaqI	TCGA	2 cut(s)	181, 1485
TasI	AATT	7 cut(s)	253, 336, 718, 926, 1094, 1217, 1549
TatI	WGTACW	2 cut(s)	87, 837
TauI	GCSGC	1 cut(s)	715
TfiI	GAWTC	5 cut(s)	51, 383, 871, 1103, 1240
Tru1I	TTAA	5 cut(s)	231, 257, 750, 1490, 1503
Tru9I	TTAA	5 cut(s)	231, 257, 750, 1490, 1503
TscAI	CASTG	1 cut(s)	1515
TseFI	GTSAC	2 cut(s)	67, 359
TseI	GCWGC	4 cut(s)	581, 620, 1540, 1565
Tsp45I	GTSAC	2 cut(s)	67, 359
TspGWI	ACGGA	1 cut(s)	1416
TspRI	CASTG	1 cut(s)	1515
Vha464I	CTTAAG	1 cut(s)	1502
VpaK11BI	GGWCC	2 cut(s)	406, 553
XapI	RAATTY	2 cut(s)	253, 718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1462
XmiI	GTMKAC	2 cut(s)	797, 962
XmnI	GAANNNNTTC	1 cut(s)	1144
XspI	CTAG	1 cut(s)	585
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.