AT2G34440
MADS Family

Agamous-like MADS-box protein AGL61

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012972
Physical Location & Seq
Forward (+)
14526671 .. 14527734
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34440.1

Sequence Viewer

Length: 519 bp
ATGGGTCGGAGAAAGATCAAGATGGAGATGGTTCAGGACATGAACACACGACAGGTTACCTTTTCAAAACGGAGGACTGGTTTGTTCAAGAAGGCGAGCGAGTTAGCCACGCTCTGCAACGCTGAGTTGGGCATCGTTGTCTTTTCACCAGGAGGCAAGCCTTTCTCCTACGGGAAACCGAATCTTGATTCTGTTGCAGAGCGATTCATGAGAGAATATGATGATTCAGACAGTGGCGATGAAGAAAAAAGTGGTAATTACAGGCCTAAACTGAAGAGGCTGAGTGAACGTCTCGATTTGCTCAACCAAGAGGTTGAAGCTGAGAAGGAACGAGGCGAGAAGAGTCAGGAGAAGCTTGAATCTGCTGGGGATGAGAGATTCAAGGAGTCCATTGAGACGCTTACCCTCGATGAACTCAATGAATACAAAGATAGGCTTCAGACAGTCCATGGTAGGATTGAAGGTCAAGTCAATCACTTGCAGGCTTCGTCTTGCCTCATGCTTCTCTCCAGAAAATAG

Protein Analysis

172

Amino Acids

19.75

Weight (kDa)

6.77

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 12 - 57 1.4e-23 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012972)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34440 AT3G66656
fragaria_vesca FvH4_3g05940 FvH4_3g36320
malus_domestica MD05G1287100.v1.1 MD10G1264500.v1.1
prunus_persica Prupe.4G077800_v2.0.a1
pyrus_communis pycom05g26560
rosa_chinensis RchiOBHm_Chr5g0013531
rosa_laevigata RLG00000032023
rosa_multiflora Rmu_sc0014653.1_g000002
rosa_roxburghii Rroxscaffold_1G00063040
rosa_rugosa Rorug05G0010300
rosa_samantha Rh5AG105300 Rh5BG101400 Rh5CG113400 Rh5DG100100
rosa_wichuraiana Rw5G009160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 293, 422
AgsI TTSAA 6 cut(s) 66, 88, 317, 359, 382, 461
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 2 cut(s) 320, 355
AluI AGCT 2 cut(s) 320, 355
Alw26I GTCTC 2 cut(s) 296, 389
AoxI GGCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 138
BccI CCATC 2 cut(s) 16, 22
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 296, 389
Bme1390I CCNGG 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 448
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 1 cut(s) 376
BseMII CTCAG 3 cut(s) 114, 272, 312
BseNI ACTGG 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 1 cut(s) 265
BsmAI GTCTC 2 cut(s) 296, 389
BsmBI CGTCTC 2 cut(s) 296, 389
BsnI GGCC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 448
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 3 cut(s) 115, 273, 313
BspHI TCATGA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 233, 445
Bst6I CTCTTC 2 cut(s) 269, 335
BstC8I GCNNGC 3 cut(s) 97, 158, 483
BstDEI CTNAG 3 cut(s) 123, 281, 321
BstDSI CCRYGG 1 cut(s) 448
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 2 cut(s) 296, 389
BstMBI GATC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 150
BstPI GGTNACC 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 265
BtgI CCRYGG 1 cut(s) 448
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 3 cut(s) 97, 158, 483
CciI TCATGA 1 cut(s) 207
CseI GACGC 1 cut(s) 406
CviAII CATG 4 cut(s) 40, 208, 449, 499
CviJI RGCY 8 cut(s) 107, 160, 265, 280, 320, 355, 436, 485
CviKI_1 RGCY 8 cut(s) 107, 160, 265, 280, 320, 355, 436, 485
DdeI CTNAG 3 cut(s) 123, 281, 321
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 269, 335
EarI CTCTTC 2 cut(s) 269, 335
Eco130I CCWWGG 1 cut(s) 448
Eco147I AGGCCT 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 293, 422
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 448
Esp3I CGTCTC 2 cut(s) 296, 389
FaeI CATG 4 cut(s) 43, 211, 452, 502
FaiI YATR 5 cut(s) 41, 209, 219, 450, 500
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FatI CATG 4 cut(s) 39, 207, 448, 498
FokI GGATG 1 cut(s) 383
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 493
HaeIII GGCC 1 cut(s) 265
HgaI GACGC 1 cut(s) 406
Hin1II CATG 4 cut(s) 43, 211, 452, 502
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 8 cut(s) 181, 188, 204, 224, 343, 359, 378, 386
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 3 cut(s) 9, 229, 441
Hpy188III TCNNGA 8 cut(s) 19, 35, 88, 185, 208, 293, 347, 510
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 85, 319, 455
HpyCH4III ACNGT 2 cut(s) 233, 445
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 3 cut(s) 117, 197, 481
HpyF3I CTNAG 3 cut(s) 123, 281, 321
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 4 cut(s) 43, 211, 452, 502
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 9 cut(s) 20, 38, 63, 135, 162, 247, 332, 351, 467
LweI GCATC 1 cut(s) 141
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 3 cut(s) 254, 286, 352
MluCI AATT 1 cut(s) 256
MlyI GAGTC 2 cut(s) 352, 395
MnlI CCTC 7 cut(s) 66, 146, 270, 304, 326, 416, 506
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 448
NdeII GATC 1 cut(s) 15
NlaIII CATG 4 cut(s) 43, 211, 452, 502
PagI TCATGA 1 cut(s) 207
PceI AGGCCT 1 cut(s) 265
PfeI GAWTC 6 cut(s) 181, 188, 204, 224, 359, 378
PleI GAGTC 2 cut(s) 351, 394
PpsI GAGTC 2 cut(s) 351, 394
Psp6I CCWGG 1 cut(s) 148
PspEI GGTNACC 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 1 cut(s) 148
Sau3AI GATC 1 cut(s) 15
SchI GAGTC 2 cut(s) 352, 395
ScrFI CCNGG 1 cut(s) 150
SetI ASST 7 cut(s) 57, 62, 292, 315, 322, 357, 466
SfaNI GCATC 1 cut(s) 141
Sse9I AATT 1 cut(s) 256
SseBI AGGCCT 1 cut(s) 265
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 2 cut(s) 233, 445
TaiI ACGT 1 cut(s) 292
TaqI TCGA 2 cut(s) 294, 408
TasI AATT 1 cut(s) 256
TfiI GAWTC 6 cut(s) 181, 188, 204, 224, 359, 378
TscAI CASTG 1 cut(s) 238
TspDTI ATGAA 5 cut(s) 56, 196, 255, 426, 435
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.