Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012972

Physical Location & Seq

Genomic Coordinates Forward (+)

9278897 .. 9279825

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG113400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCAAACAGCAAAGCTAACAATCCACCAAAACAACAAGCATTGGAGGAAGAGGACAACACTGATGATCGTGGTGTTCGTCGTTCTGGAAAAGTAGTGGAGAGGCTAAACCAACAGCTCGCCGATGTTGTGAAGAATTTGGAGGCTGAGAAGAAAAGGGGTGAGGTGATTGCTAAGGCACTAGTGAAAGCAGAAACGAAATGGGGGCTTACAATCCAGGAGAGGAGCCACGGTGAGCTTGTAAAAGTGAAGCAGTCGCTTGAGGAGTTGCACGAGAGTGTGAAGGCAAGAGAGAGTGACATGGAGGCATCGTCTTCTTTGCTGCTCCTGGCAAACAAGCCGGCGAAAGAGACTAAGAAGACTGTTGCTAAAAGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

126

Amino Acids

13.96

Weight (kDa)

9.12

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34440 AT3G66656
fragaria_vesca	FvH4_3g05940 FvH4_3g36320
malus_domestica	MD05G1287100.v1.1 MD10G1264500.v1.1
prunus_persica	Prupe.4G077800_v2.0.a1
pyrus_communis	pycom05g26560
rosa_chinensis	RchiOBHm_Chr5g0013531
rosa_laevigata	RLG00000032023
rosa_multiflora	Rmu_sc0014653.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063040
rosa_rugosa	Rorug05G0010300
rosa_samantha	Rh5AG105300 Rh5BG101400 Rh5CG113400 Rh5DG100100
rosa_wichuraiana	Rw5G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	136
AhlI	ACTAGT	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	216, 327
AleI	CACNNNNGTG	1 cut(s)	276
AluBI	AGCT	3 cut(s)	17, 118, 238
AluI	AGCT	3 cut(s)	17, 118, 238
Alw26I	GTCTC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	173, 178, 245
BauI	CACGAG	1 cut(s)	272
BbsI	GAAGAC	2 cut(s)	306, 365
BbvI	GCAGC	1 cut(s)	309
BciT130I	CCWGG	2 cut(s)	218, 329
BcoDI	GTCTC	1 cut(s)	344
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	2 cut(s)	218, 329
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	218, 329
BmsI	GCATC	1 cut(s)	317
BpiI	GAAGAC	2 cut(s)	306, 365
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	4 cut(s)	217, 247, 296, 326
Bse118I	RCCGGY	1 cut(s)	340
BseBI	CCWGG	2 cut(s)	218, 329
BseDI	CCNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	138
BseRI	GAGGAG	2 cut(s)	238, 278
BseXI	GCAGC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	218, 329
Bst4CI	ACNGT	2 cut(s)	233, 364
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	120, 342
BstDEI	CTNAG	3 cut(s)	147, 174, 354
BstDSI	CCRYGG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	218, 329
BstSCI	CCNGG	2 cut(s)	216, 327
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	2 cut(s)	306, 365
BtgI	CCRYGG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	120, 342
Cfr10I	RCCGGY	1 cut(s)	340
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	9 cut(s)	17, 106, 118, 146, 208, 228, 238, 340, 378
CviKI_1	RGCY	9 cut(s)	17, 106, 118, 146, 208, 228, 238, 340, 378
DdeI	CTNAG	3 cut(s)	147, 174, 354
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EcoRII	CCWGG	2 cut(s)	216, 327
FaeI	CATG	1 cut(s)	304
FaiI	YATR	1 cut(s)	302
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	323
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	1 cut(s)	304
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	3 cut(s)	173, 178, 245
Hpy188III	TCNNGA	1 cut(s)	87
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	233, 364
HpyCH4V	TGCA	1 cut(s)	271
HpyF3I	CTNAG	3 cut(s)	147, 174, 354
Hsp92II	CATG	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	2 cut(s)	225, 330
LpnPI	CCDG	6 cut(s)	72, 203, 230, 314, 341, 354
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	5 cut(s)	62, 145, 163, 306, 370
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	8 cut(s)	40, 46, 96, 136, 157, 216, 256, 298
MroNI	GCCGGC	1 cut(s)	340
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	218, 329
MvaI	CCWGG	2 cut(s)	218, 329
NaeI	GCCGGC	1 cut(s)	342
NdeII	GATC	1 cut(s)	67
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	296
OliI	CACNNNNGTG	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PdiI	GCCGGC	1 cut(s)	342
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	216, 327
PspGI	CCWGG	2 cut(s)	216, 327
PspN4I	GGNNCC	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	276
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	218, 329
SetI	ASST	4 cut(s)	19, 120, 168, 240
SfaNI	GCATC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	181
Sse9I	AATT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	216, 327
TaaI	ACNGT	2 cut(s)	233, 364
TasI	AATT	1 cut(s)	136
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	296
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	136
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.