Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012972

Physical Location & Seq

Genomic Coordinates Reverse (-)

41959737 .. 41960264

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1287100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGAGGAGAAAAATTGAGATGAAAGTGGTGGAGGATAGCAGCTCTAGGCAGGTGACCTTCTCCAAGCGCAGGAGTGGCGTGTTCAAGAAAGCAAACGAGCTCGCCATCCTGTGCGGCGCTGAGATTGCCGTCCTTGTTTTCTCTCCGGGAGGTAAGCCCTTCTCGTTTGGGCACCCGAATGTGGAGTCTATCGCAGATAGGTTTCTAAATGAGGAGTGCCCTAAATCAAAATTTAGGGTTTCAAAGAATGATGAAAAAGCGGGGAGGCTTAACCAGCAACTGGAGGACATGGACAGCCAGTTGGAGGCTGAGAAGAAAAGAGGACTTGTGCTTGACAAGGCTGTACTGAAAGCAAGGGGTTTGCCACTCAAAAGCAAACCGCCGAGCTTTCGTGAGCTGAGCCGGGCAGATCTTCGAAAAATGAAGGCGTCGCTGGAGGCGCTGCGCGAGACCGTGAAAGAAAGAGCCAGTGAGGTGGAGGCATCGTCTTCGCTACTGCTCCTGGCAAATGACAGGAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

176

Amino Acids

19.6

Weight (kDa)

9.78

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 57	2.3e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34440 AT3G66656
fragaria_vesca	FvH4_3g05940 FvH4_3g36320
malus_domestica	MD05G1287100.v1.1 MD10G1264500.v1.1
prunus_persica	Prupe.4G077800_v2.0.a1
pyrus_communis	pycom05g26560
rosa_chinensis	RchiOBHm_Chr5g0013531
rosa_laevigata	RLG00000032023
rosa_multiflora	Rmu_sc0014653.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063040
rosa_rugosa	Rorug05G0010300
rosa_samantha	Rh5AG105300 Rh5BG101400 Rh5CG113400 Rh5DG100100
rosa_wichuraiana	Rw5G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	174
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccII	CGCG	1 cut(s)	450
AciI	CCGC	3 cut(s)	117, 263, 383
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	431
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	4 cut(s)	72, 184, 283, 307
AgsI	TTSAA	2 cut(s)	88, 246
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	4 cut(s)	45, 103, 390, 400
AluI	AGCT	4 cut(s)	45, 103, 390, 400
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	446, 516
AlwNI	CAGNNNCTG	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	42, 445
ApoI	RAATTY	1 cut(s)	233
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	4 cut(s)	72, 122, 445, 450
AsuC2I	CCSGG	2 cut(s)	150, 407
AsuHPI	GGTGA	1 cut(s)	67
AsuII	TTCGAA	1 cut(s)	418
BaeGI	GKGCMC	2 cut(s)	177, 224
BanI	GGYRCC	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	54, 432
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BciT130I	CCWGG	1 cut(s)	506
BcnI	CCSGG	2 cut(s)	150, 407
BcoDI	GTCTC	2 cut(s)	446, 516
BfaI	CTAG	1 cut(s)	48
BfoI	RGCGCY	2 cut(s)	123, 446
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	3 cut(s)	43, 118, 446
BlpI	GCTNAGC	1 cut(s)	401
BlsI	GCNGC	3 cut(s)	44, 119, 447
Bme1390I	CCNGG	3 cut(s)	150, 407, 506
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	3 cut(s)	150, 407, 506
BmsI	GCATC	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	483
BpmI	CTGGAG	2 cut(s)	305, 458
Bpu1102I	GCTNAGC	1 cut(s)	401
Bpu14I	TTCGAA	1 cut(s)	418
BpuMI	CCSGG	2 cut(s)	150, 407
BsaHI	GRCGYC	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 184, 283, 307
Bse1I	ACTGG	3 cut(s)	288, 301, 471
BseBI	CCWGG	1 cut(s)	506
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	4 cut(s)	72, 184, 283, 307
BseMII	CTCAG	3 cut(s)	114, 303, 392
BseNI	ACTGG	3 cut(s)	288, 301, 471
BseRI	GAGGAG	2 cut(s)	22, 230
BseSI	GKGCMC	2 cut(s)	177, 224
BseXI	GCAGC	2 cut(s)	54, 432
Bsh1236I	CGCG	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	149, 406
BslI	CCNNNNNNNGG	4 cut(s)	72, 184, 283, 307
BsmAI	GTCTC	2 cut(s)	446, 516
Bso31I	GGTCTC	1 cut(s)	446
Bsp119I	TTCGAA	1 cut(s)	418
Bsp1286I	GDGCHC	3 cut(s)	105, 177, 224
Bsp143I	GATC	1 cut(s)	412
Bsp1720I	GCTNAGC	1 cut(s)	401
BspACI	CCGC	3 cut(s)	117, 263, 383
BspCNI	CTCAG	3 cut(s)	115, 304, 393
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	43
BspT104I	TTCGAA	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	288, 301, 471
BssMI	GATC	1 cut(s)	412
BssNI	GRCGYC	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	1 cut(s)	457
BstACI	GRCGYC	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	123, 312, 401
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	450
BstH2I	RGCGCY	2 cut(s)	123, 446
BstHHI	GCGC	4 cut(s)	72, 122, 445, 450
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	2 cut(s)	446, 516
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 128, 277, 442
BstNI	CCWGG	1 cut(s)	506
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	3 cut(s)	148, 405, 504
BstSLI	GKGCMC	2 cut(s)	177, 224
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	54, 432
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	478
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	4 cut(s)	72, 122, 445, 450
CseI	GACGC	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	1 cut(s)	292
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	3 cut(s)	123, 312, 401
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	1 cut(s)	295
FaiI	YATR	1 cut(s)	293
FatI	CATG	1 cut(s)	291
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	43, 118, 446
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	43, 118, 446
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	4 cut(s)	71, 121, 444, 449
GluI	GCNGC	3 cut(s)	43, 118, 446
GsuI	CTGGAG	2 cut(s)	305, 458
HaeII	RGCGCY	2 cut(s)	123, 446
HapII	CCGG	2 cut(s)	149, 406
HgaI	GACGC	1 cut(s)	420
HhaI	GCGC	4 cut(s)	72, 122, 445, 450
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	4 cut(s)	70, 120, 443, 448
HinP1I	GCGC	4 cut(s)	70, 120, 443, 448
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	2 cut(s)	149, 406
HphI	GGTGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	88, 395
Hpy99I	CGWCG	1 cut(s)	436
HpyAV	CCTTC	3 cut(s)	70, 172, 421
HpyCH4III	ACNGT	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 128, 277, 442
HpyF3I	CTNAG	3 cut(s)	123, 312, 401
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	4 cut(s)	70, 120, 443, 448
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	507
Lsp1109I	GCAGC	2 cut(s)	54, 432
LweI	GCATC	1 cut(s)	494
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	3 cut(s)	328, 407, 483
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	3 cut(s)	105, 177, 224
MluCI	AATT	2 cut(s)	15, 233
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	285
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	2 cut(s)	149, 406
MspR9I	CCNGG	3 cut(s)	150, 407, 506
MteI	GCGCNGCGC	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	4 cut(s)	78, 128, 277, 442
NciI	CCSGG	2 cut(s)	150, 407
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	176
NmeAIII	GCCGAG	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	44, 119, 447
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	504
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	43, 118, 446
Sau3AI	GATC	1 cut(s)	412
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	3 cut(s)	150, 407, 506
SduI	GDGCHC	3 cut(s)	105, 177, 224
SetI	ASST	9 cut(s)	47, 57, 62, 105, 157, 206, 392, 402, 480
SfaNI	GCATC	1 cut(s)	494
SfuI	TTCGAA	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	15, 233
SsiI	CCGC	3 cut(s)	117, 263, 383
SspMI	CTAG	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	148, 405, 504
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	1 cut(s)	418
TasI	AATT	2 cut(s)	15, 233
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	42, 445
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	38, 270, 440
TspRI	CASTG	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	283
XapI	RAATTY	1 cut(s)	233
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.